mRNA_M-pyrifera_M_contig123747.4855.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123747.4855.1
Unique NamemRNA_M-pyrifera_M_contig123747.4855.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A1B6Y8W5_9BACT (Uncharacterized protein n=5 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y8W5_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.240e-26
Identity = 105/147 (71.43%), Postives = 118/147 (80.27%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPNSGGVFGWVKKLFD 441
            YDVP+EVEEYRYRAELVG  KA Q++SLVSKMD++DI++I+ EVGY P E+ LP EVK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                K++ LPRP+YDGLSGGREG   SGGVFGWVKKLF+
Sbjct:  438 YDVPNEVEEYRYRAELVGSKKAGQMVSLVSKMDRDDIEKITNEVGYAPEEIKLPEEVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETAD------------KSYGLPRPSYDGLSGGREGD-RSGGVFGWVKKLFN 571          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A6A8Q4X6_9BACT (DEAD/DEAH box helicase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q4X6_9BACT)

HSP 1 Score: 110 bits (276), Expect = 1.360e-25
Identity = 110/152 (72.37%), Postives = 122/152 (80.26%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGK-----PN-SGGVFGWVKKLF 438
            YDVPSEVEEY+YRAELVG+GKAS++ISLVSKMD++DI +I EEVG+ P+E+ LP EVKE  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           K   LP PTYDGLSGGREGK     PN + G FGW+KKLF
Sbjct:  395 YDVPSEVEEYKYRAELVGRGKASRMISLVSKMDRDDINKIVEEVGFSPTEIPLPKEVKEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN----------KKGGLPLPTYDGLSGGREGKGKRPAPNDNSGAFGWIKKLF 536          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: UPI00036331C2 (DEAD/DEAH box helicase n=1 Tax=Balneola vulgaris TaxID=287535 RepID=UPI00036331C2)

HSP 1 Score: 109 bits (273), Expect = 4.770e-25
Identity = 120/151 (79.47%), Postives = 131/151 (86.75%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEV---KEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFEL--PRPTYDGLSGGREGKPNSGGVFGWVKKLF 438
            YDVPSEVEEY+YRAELVG  KA+Q++SLVSKMD+EDI RI++EVGY P E+ LP EV   K+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K  EL  PRP+YDGLSGGREG+    GVFGWVKKLF
Sbjct:  521 YDVPSEVEEYKYRAELVGNKKAAQMVSLVSKMDREDIDRITKEVGYAPVEIKLPEEVLEKKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSKRDELALPRPSYDGLSGGREGREEPKGVFGWVKKLF 671          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A2D8CJ24_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D8CJ24_9BACT)

HSP 1 Score: 108 bits (271), Expect = 7.180e-25
Identity = 114/155 (73.55%), Postives = 130/155 (83.87%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPN--------SGGVFGWVKKLFD 441
            YDVP+EVEEY+YRAELVG GKA++++SLVSKMD++DI  I E+VG+ P+E+ LP EVKE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LPRP+YDGLSGG+EGK +        S G FGW+KKLFD
Sbjct:  402 YDVPNEVEEYKYRAELVGNGKAARMVSLVSKMDKDDIDEIVEKVGFAPTEIPLPEEVKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSTNGLPRPSYDGLSGGKEGKKDRKRPSPGKSDGAFGWIKKLFD 556          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A2D9FVK7_9BACT (Uncharacterized protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FVK7_9BACT)

HSP 1 Score: 107 bits (267), Expect = 2.280e-24
Identity = 93/155 (60.00%), Postives = 109/155 (70.32%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPN--------SGGVFGWVKKLFD 441
            YDVP+EVEEY+YRAELVG+GKA++I+SLVSKMD++DI  I ++VGY P+EL LP EVKE       XXXXXXXXXXXXXXXXXXXXXXXXXXX                   ++  LPRPTYDGLSGG+EG  N        S G FGW+KKLF+
Sbjct:  390 YDVPNEVEEYKYRAELVGRGKAARIVSLVSKMDKDDIDEIVKKVGYAPTELPLPEEVKEKKSRGKNXXXXXXXXXXXXXXXXXXXXXXXXXXXEK-----------------QSNGLPRPTYDGLSGGKEGDENGKRPTPSSSDGAFGWIKKLFN 527          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A521CFZ6_9BACT (Superfamily II DNA and RNA helicase n=1 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521CFZ6_9BACT)

HSP 1 Score: 107 bits (267), Expect = 2.400e-24
Identity = 96/157 (61.15%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGK-------PNSG---GVFGWVKKLFD 441
            YDVP+EVEEY+YRAELVGKGKA+++ISLVSKMD++DI  I ++VGY P E+ LP EVKE        XXXXXXXXXXXXXXXXXXXXXXXXXXXX                 K   LPRPTYDGLSGG+EGK       P+ G   G FGW+KKLF+
Sbjct:  395 YDVPNEVEEYKYRAELVGKGKATRMISLVSKMDKDDIDEIVKQVGYAPKEIPLPEEVKEKKGRGKKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKKEN------------KTNGLPRPTYDGLSGGKEGKKKGKGKRPSPGKSDGAFGWIKKLFN 539          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A3M8FZ24_9BACT (DEAD/DEAH box helicase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3M8FZ24_9BACT)

HSP 1 Score: 106 bits (264), Expect = 5.570e-24
Identity = 64/147 (43.54%), Postives = 77/147 (52.38%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPNSGGVFGWVKKLFD 441
            YDVP  V+EY  R ELV  GK ++IISLVSKMD++DI RIS+E+GY P E+ LP++VKE                                                     K  ELPRPTY+GLSGGR+G  NS GVFGWVKKLF+
Sbjct:  387 YDVPESVDEYSRRIELVKSGKTARIISLVSKMDKDDIARISDELGYAPFEIPLPLQVKEKKKGNKSGPKKRATGKKPAAQKNKAKKAPRKKV--------------------KPNELPRPTYEGLSGGRDGDSNSKGVFGWVKKLFN 513          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: UPI000364976B (DEAD/DEAH box helicase n=1 Tax=Gracilimonas tropica TaxID=454600 RepID=UPI000364976B)

HSP 1 Score: 105 bits (262), Expect = 1.100e-23
Identity = 82/155 (52.90%), Postives = 100/155 (64.52%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPN--------SGGVFGWVKKLFD 441
            YDVP+EVEEY+YRAELVG+GKA++++SLVSKMD++DI  I ++VGY P+E+ LP EVKE            XXXXXXXXXXXXXXXXXX                       K+  LPRP+YDGLSGG+EG  N        S G FGW+KKLF+
Sbjct:  389 YDVPNEVEEYKYRAELVGRGKAARMVSLVSKMDKDDIDEIVKKVGYAPTEIPLPEEVKEKKSRGKGKKSSDXXXXXXXXXXXXXXXXXXEK---------------------KSNGLPRPSYDGLSGGKEGDSNGKRPSPSSSDGAFGWIKKLFN 522          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: UPI000CD9DBF2 (DEAD/DEAH box helicase n=1 Tax=Gracilimonas amylolytica TaxID=1749045 RepID=UPI000CD9DBF2)

HSP 1 Score: 102 bits (255), Expect = 1.050e-22
Identity = 89/153 (58.17%), Postives = 107/153 (69.93%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGK-----PNS-GGVFGWVKKLFD 441
            YDVP+EVEEY+YRAELVG GKA++++SLVSKMD++DI  I ++VGY P+E+ LP EVKE             XXXXXXXXXXXXXXXXXXXXXXXXX               K   LPRP+Y+GLSGG+EGK     P+S  G FGW+KKLF+
Sbjct:  395 YDVPNEVEEYKYRAELVGNGKAARMVSLVSKMDKDDIDEIVKKVGYAPTEIPLPEEVKEKKGRSKKNTDSNKXXXXXXXXXXXXXXXXXXXXXXXXXK--------------KTNGLPRPSYEGLSGGKEGKGKRPAPSSEDGAFGWIKKLFN 533          
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Match: A0A6I7NWF8_9BACT (DEAD/DEAH box helicase n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7NWF8_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 5.960e-20
Identity = 83/146 (56.85%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    1 YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSELALPVEVKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAFELPRPTYDGLSGGREGKPNSGGVFGWVKKLF 438
            YDVP EV EY+ RAELVG GKAS+I+SLVSK D+ DI  I   +GY P E+ LP  VKE       XXXXXXXXXXXXXXXXXXXXXXXX                      K  ELPRPT+D L GGR GKP   G+FG++KKLF
Sbjct:  326 YDVPEEVSEYKLRAELVGDGKASRILSLVSKQDRNDINTICSSLGYAPEEVPLPKNVKEKLSGNGGXXXXXXXXXXXXXXXXXXXXXXXXKAPK------------------KIDELPRPTFDQLEGGRTGKPQKKGLFGFIKKLF 453          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123747.4855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B6Y8W5_9BACT1.240e-2671.43Uncharacterized protein n=5 Tax=Bacteroidetes/Chlo... [more]
A0A6A8Q4X6_9BACT1.360e-2572.37DEAD/DEAH box helicase n=1 Tax=Balneolaceae bacter... [more]
UPI00036331C24.770e-2579.47DEAD/DEAH box helicase n=1 Tax=Balneola vulgaris T... [more]
A0A2D8CJ24_9BACT7.180e-2573.55Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A2D9FVK7_9BACT2.280e-2460.00Uncharacterized protein n=1 Tax=Balneola sp. TaxID... [more]
A0A521CFZ6_9BACT2.400e-2461.15Superfamily II DNA and RNA helicase n=1 Tax=Gracil... [more]
A0A3M8FZ24_9BACT5.570e-2443.54DEAD/DEAH box helicase n=1 Tax=Balneola sp. TaxID=... [more]
UPI000364976B1.100e-2352.90DEAD/DEAH box helicase n=1 Tax=Gracilimonas tropic... [more]
UPI000CD9DBF21.050e-2258.17DEAD/DEAH box helicase n=1 Tax=Gracilimonas amylol... [more]
A0A6I7NWF8_9BACT5.960e-2056.85DEAD/DEAH box helicase n=1 Tax=Balneolaceae bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123747contigM-pyrifera_M_contig123747:2..445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.8
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog1121104.AQXH01000001_gene2070
KEGG koko:K03732,ko:K11927
KEGG Pathwayko03018,map03018
KEGG ModuleM00394
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,COG0513@2
EC3.6.4.13
COG Functional cat.L
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons1
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.9096296-CDS-M-pyrifera_M_contig123747:1..4451622815755.9096296-CDS-M-pyrifera_M_contig123747:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123747 2..445 +
1692277554.4822276-CDS-M-pyrifera_M_contig123747:1..4451692277554.4822276-CDS-M-pyrifera_M_contig123747:1..445Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123747 2..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123747.4855.1prot_M-pyrifera_M_contig123747.4855.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123747 2..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123747.4855.1

>prot_M-pyrifera_M_contig123747.4855.1 ID=prot_M-pyrifera_M_contig123747.4855.1|Name=mRNA_M-pyrifera_M_contig123747.4855.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
YDVPSEVEEYRYRAELVGKGKASQIISLVSKMDQEDIKRISEEVGYPPSE
LALPVEVKEKKQKKSTSKAKTNGRPNNKGKSKGKNSPKSRNGDAKTNNNS
KRTRVQVKKKKQKAFELPRPTYDGLSGGREGKPNSGGVFGWVKKLFD*
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mRNA from alignment at M-pyrifera_M_contig123747:2..445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123747.4855.1 ID=mRNA_M-pyrifera_M_contig123747.4855.1|Name=mRNA_M-pyrifera_M_contig123747.4855.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig123747:2..445+ (Macrocystis pyrifera P11B4 male)
TACGATGTACCAAGCGAGGTTGAGGAATATAGGTATCGAGCTGAGTTGGT AGGAAAAGGAAAAGCATCTCAGATTATCTCTTTGGTATCCAAAATGGATC AAGAGGATATTAAGCGTATTTCTGAGGAAGTGGGCTATCCTCCATCAGAG CTAGCTCTTCCTGTTGAAGTGAAGGAGAAGAAGCAAAAGAAGTCTACTTC TAAAGCCAAAACAAATGGAAGGCCAAATAATAAAGGAAAGAGTAAAGGTA AGAATTCCCCAAAAAGCAGAAATGGTGACGCAAAGACCAACAATAATTCT AAACGAACTAGAGTACAGGTAAAAAAGAAAAAACAGAAAGCGTTTGAATT ACCCCGACCAACTTATGATGGACTTTCTGGCGGCCGTGAAGGAAAACCAA ACTCCGGTGGAGTTTTTGGATGGGTAAAGAAACTGTTCGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123747:2..445+

>mRNA_M-pyrifera_M_contig123747.4855.1 ID=mRNA_M-pyrifera_M_contig123747.4855.1|Name=mRNA_M-pyrifera_M_contig123747.4855.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig123747:2..445+ (Macrocystis pyrifera P11B4 male)
TACGATGTACCAAGCGAGGTTGAGGAATATAGGTATCGAGCTGAGTTGGT
AGGAAAAGGAAAAGCATCTCAGATTATCTCTTTGGTATCCAAAATGGATC
AAGAGGATATTAAGCGTATTTCTGAGGAAGTGGGCTATCCTCCATCAGAG
CTAGCTCTTCCTGTTGAAGTGAAGGAGAAGAAGCAAAAGAAGTCTACTTC
TAAAGCCAAAACAAATGGAAGGCCAAATAATAAAGGAAAGAGTAAAGGTA
AGAATTCCCCAAAAAGCAGAAATGGTGACGCAAAGACCAACAATAATTCT
AAACGAACTAGAGTACAGGTAAAAAAGAAAAAACAGAAAGCGTTTGAATT
ACCCCGACCAACTTATGATGGACTTTCTGGCGGCCGTGAAGGAAAACCAA
ACTCCGGTGGAGTTTTTGGATGGGTAAAGAAACTGTTCGACTAATACGAT
GTACCAAGCGAGGTTGAGGAATATAGGTATCGAGCTGAGTTGGTAGGAAA
AGGAAAAGCATCTCAGATTATCTCTTTGGTATCCAAAATGGATCAAGAGG
ATATTAAGCGTATTTCTGAGGAAGTGGGCTATCCTCCATCAGAGCTAGCT
CTTCCTGTTGAAGTGAAGGAGAAGAAGCAAAAGAAGTCTACTTCTAAAGC
CAAAACAAATGGAAGGCCAAATAATAAAGGAAAGAGTAAAGGTAAGAATT
CCCCAAAAAGCAGAAATGGTGACGCAAAGACCAACAATAATTCTAAACGA
ACTAGAGTACAGGTAAAAAAGAAAAAACAGAAAGCGTTTGAATTACCCCG
ACCAACTTATGATGGACTTTCTGGCGGCCGTGAAGGAAAACCAAACTCCG
GTGGAGTTTTTGGATGGGTAAAGAAACTGTTCGACTAA
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