mRNA_M-pyrifera_M_contig123745.4854.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123745.4854.1
Unique NamemRNA_M-pyrifera_M_contig123745.4854.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A2P6NGE3_9EUKA (RING zinc finger-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NGE3_9EUKA)

HSP 1 Score: 226 bits (576), Expect = 1.710e-65
Identity = 109/174 (62.64%), Postives = 130/174 (74.71%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERR-------NTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYLEE------RNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AWAND GVKI DC +GQRITYIDRPKGSPRPDLY C LCWES   LLIGWADS+KIG +KER        + S  LP RYV+I +M QT+Y I GIAPFGEYL++LAYL++      R  + + LRPE RII R+N+++SSDALTI GFE Y A +YRL  M+ ESLFY+VSP+
Sbjct:  466 AWANDMGVKIFDCDSGQRITYIDRPKGSPRPDLYHCQLCWESPTSLLIGWADSVKIGSIKERSPAATTTGDPSSALPDRYVQITSMFQTDYNISGIAPFGEYLILLAYLDDEETDDRRGSRTQGLRPEFRIINRNNKEISSDALTIHGFEQYKANHYRLGFMSEESLFYVVSPR 639
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A7S0TL93_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TL93_HEMAN)

HSP 1 Score: 203 bits (516), Expect = 3.210e-58
Identity = 98/163 (60.12%), Postives = 123/163 (75.46%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYL--EERNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AWAND GVK++D  +GQRITYIDRPKGSPR DL++C+LCWE+  +LLIGWAD +KI QVKER+   GG+P +YVEIV    T+Y ICGIAP    LVVLA++  +E      A RPELRI+ RSN++VSSDAL++ GFE   A +YR+  +AS  LF+IVSPK
Sbjct:  176 AWANDFGVKVYDSVSGQRITYIDRPKGSPRADLHKCHLCWETPSMLLIGWADFVKIAQVKERQPRDGGVPQKYVEIVCFFHTDYFICGIAPLNGNLVVLAFVVDDEAPPGSGAARPELRIVARSNDEVSSDALSMHGFESLTAKDYRMAPLASSKLFFIVSPK 338
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: L8GFE9_ACACA (7fold repeat in clathrin and VPS proteins repeat-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GFE9_ACACA)

HSP 1 Score: 199 bits (506), Expect = 1.820e-56
Identity = 104/173 (60.12%), Postives = 119/173 (68.79%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVA-----------MIQTEYRICGIAPFGEYLVVLAYLEER-NEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AWAND GVKI+D  T QRIT+IDRPKGSP+ DLYRC+LCWE    LLIGWAD  ++             PTRYVEI             +I   Y +CGIAPFGEYL +LAY+EE  N +     PELRIITR NE+VSSDALTI G+E Y AT+YRLDH+ASESLFYIVSPK
Sbjct:  185 AWANDIGVKIYDVNTEQRITFIDRPKGSPKADLYRCSLCWEDPHTLLIGWADMERV-----EHTLPTAAPTRYVEIAEEYSAPQTTGAHLIDEHYFVCGIAPFGEYLCLLAYIEEEENGRKVPQPPELRIITRHNEEVSSDALTIHGYESYKATSYRLDHLASESLFYIVSPK 352
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A2P6NPI8_9EUKA (Vacuolar protein sorting-associated protein 41 homolog n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NPI8_9EUKA)

HSP 1 Score: 199 bits (506), Expect = 2.290e-56
Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNT---SGGLPTRYVEIVAM---------------IQTEYRICGIAPFGEYLVVLAYLEERNEKG--EALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AW ND GVK++DC T QRI++IDRPK SPRPDLY+C LCWES   LLIGWADS+KI QV ER N    S   P RY++I +M                QT+Y ICGIAPFGEY++ LAYLE+ +       LRPE RII+R+N+++SSDALT+ G+E Y +  Y L  M+ ES++Y+VSP+
Sbjct:  192 AWCNDAGVKVYDCDTEQRISFIDRPKESPRPDLYKCQLCWESTTRLLIGWADSVKIAQVIERTNDTDDSKKFPDRYIQITSMRVFFPPKPYAHRIRRFQTDYYICGIAPFGEYIITLAYLEDEDNPKLTRGLRPEFRIISRNNKEISSDALTVHGYEQYKSQQYSLGSMSEESMYYVVSPR 372
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: L1IWQ2_GUITC (Vacuolar protein sorting 41 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IWQ2_GUITC)

HSP 1 Score: 195 bits (496), Expect = 8.370e-55
Identity = 95/163 (58.28%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYL--EERNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AW ND GVKI D  T QRITYIDRPKGS RPD  +C+LCWE+++ LLIGWAD +KI QVKER    G    +YVEI+A   T+Y I G+AP GE LV+LAY+  EE   KG+A RPELRI+TR+N+++SSDAL++ GFE   A +Y L  + S+S+F+IVSP+
Sbjct:  342 AWTNDVGVKIFDNATNQRITYIDRPKGSLRPDAMKCHLCWETNNTLLIGWADFVKIAQVKERPARDGMQAAKYVEIIAFFHTDYFISGLAPMGENLVILAYITEEEGKSKGQAERPELRIVTRNNDELSSDALSMHGFEKLTAKDYHLAFLESDSVFFIVSPR 504
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A7S4KUA9_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUA9_GUITH)

HSP 1 Score: 195 bits (496), Expect = 1.270e-54
Identity = 95/163 (58.28%), Postives = 121/163 (74.23%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYL--EERNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AW ND GVKI D  T QRITYIDRPKGS RPD  +C+LCWE+++ LLIGWAD +KI QVKER    G    +YVEI+A   T+Y I G+AP GE LV+LAY+  EE   KG+A RPELRI+TR+N+++SSDAL++ GFE   A +Y L  + S+S+F+IVSP+
Sbjct: 1189 AWTNDVGVKIFDNATNQRITYIDRPKGSLRPDAMKCHLCWETNNTLLIGWADFVKIAQVKERPARDGMQAAKYVEIIAFFHTDYFISGLAPMGENLVILAYITEEEGKSKGQAERPELRIVTRNNDELSSDALSMHGFEKLTAKDYHLAFLESDSVFFIVSPR 1351
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A7S4KS59_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KS59_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 5.740e-54
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYLEE---------RNEKGEALRPELRIITRSNE--KVSSDALTILGFEHYAATNYRLDHMASESLFYIVSP 480
            AWAN+RGVKIHDC   QRITYI+RP  SP PD YRC++ W+S+D L IGWAD +KI  VKE ++  G  P RYVEI  +I T+Y+I GIA FG+Y+V+LAYL E         RN+K    RPELRII+R NE  ++SSDAL+++G+++Y A +Y+L  M  ESLFYI+SP
Sbjct:   49 AWANNRGVKIHDCDIKQRITYINRPDKSPAPDAYRCHITWQSEDTLFIGWADCLKIAVVKEGKDM-GPTPKRYVEIACIINTDYKISGIASFGDYMVLLAYLLEDDDEDDPTGRNKKRLPERPELRIISRDNENEEISSDALSVIGYQNYVADDYQLHAMDGESLFYIMSP 218
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A0D2WQE2_CAPO3 (Vacuolar protein sorting-associated protein 41 homolog n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WQE2_CAPO3)

HSP 1 Score: 191 bits (486), Expect = 2.000e-53
Identity = 88/168 (52.38%), Postives = 126/168 (75.00%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKER----RNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYLEERNEKGEAL---RPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AWAN+  VK++DC + QRITYI++PK + R DLYRCNLCW++D  LLIGWADS+++G VKE+    ++   GLP+R+VEIVAM  T+Y I GIAP+   + +LAY  E +  G+     RPEL+I++ +NE++S+D+L+I GF++Y   +YRL+H++SE LFYIV PK
Sbjct:  265 AWANEVSVKVYDCSSNQRITYIEKPKSATRGDLYRCNLCWKNDTTLLIGWADSVRVGVVKEKARSAKDIQAGLPSRFVEIVAMFTTDYFIAGIAPYNNDIALLAYTVEESADGKKSVPQRPELQIVSYTNEEISTDSLSINGFQNYLCGHYRLEHLSSEMLFYIVCPK 432
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A261Y0G8_9FUNG (Vacuolar protein sorting-associated protein 41 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y0G8_9FUNG)

HSP 1 Score: 190 bits (482), Expect = 4.390e-53
Identity = 91/179 (50.84%), Postives = 126/179 (70.39%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSG--GLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYL----------------EERNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AW+ND GVKI+D  TGQRITY++RP GSPRPDLY+C L W++D  L+IGWAD +KI  V+ER+ +    GLP++YVEI++M QT++ I GIA F E +++LAY+                EER  + EALRPE+RII+  NE++S+D L + G+  Y A +Y LDH+ +E+ FYI+SPK
Sbjct:   92 AWSNDLGVKIYDTATGQRITYVNRPPGSPRPDLYKCRLFWKNDTTLMIGWADMVKIAVVRERQKSEQQPGLPSQYVEIISMYQTDFMISGIASFNEDVLLLAYVLEDELQTLADESEPPPEERQRRREALRPEIRIISHDNEELSNDVLAVNGYHLYQANDYMLDHLEAENHFYIMSPK 270
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BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Match: A0A0B7N5P2_9FUNG (Vacuolar protein sorting-associated protein 41 n=6 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N5P2_9FUNG)

HSP 1 Score: 190 bits (483), Expect = 4.740e-53
Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 1 
Query:    1 AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGWADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLAYLEERNEKGE------------ALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMASESLFYIVSPK 483
            AWAND GVKI+D  T  RITYIDRP+GSPR DLY+C +CW++D  LLIGWAD++K+  VK   N + G P  YVEI AM QT+Y I GIAPF + LV+L+YL E  +K              A +PEL II   NE++S+D L + GFEHY A +Y LD +  E +FY++ PK
Sbjct:  207 AWANDMGVKIYDTTTNIRITYIDRPEGSPRADLYKCRMCWKNDTTLLIGWADTVKVAVVKPNVNPAQGQPAHYVEITAMFQTDYIISGIAPFNDTLVLLSYLLEEEDKERDSENTASQRKRLASKPELHIINEDNEEISADVLALHGFEHYQANDYVLDFLVEEDMFYVMGPK 379
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123745.4854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2P6NGE3_9EUKA1.710e-6562.64RING zinc finger-containing protein n=1 Tax=Planop... [more]
A0A7S0TL93_HEMAN3.210e-5860.12Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
L8GFE9_ACACA1.820e-5660.127fold repeat in clathrin and VPS proteins repeat-c... [more]
A0A2P6NPI8_9EUKA2.290e-5653.59Vacuolar protein sorting-associated protein 41 hom... [more]
L1IWQ2_GUITC8.370e-5558.28Vacuolar protein sorting 41 n=1 Tax=Guillardia the... [more]
A0A7S4KUA9_GUITH1.270e-5458.28Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4KS59_9EUKA5.740e-5456.14Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0D2WQE2_CAPO32.000e-5352.38Vacuolar protein sorting-associated protein 41 hom... [more]
A0A261Y0G8_9FUNG4.390e-5350.84Vacuolar protein sorting-associated protein 41 n=1... [more]
A0A0B7N5P2_9FUNG4.740e-5352.02Vacuolar protein sorting-associated protein 41 n=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123745contigM-pyrifera_M_contig123745:3..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue4.7e-48
Seed eggNOG ortholog55529.EKX40279
Preferred nameVPS41
KEGG koko:K20184
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2066@1,KOG2066@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size513
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.8726237-CDS-M-pyrifera_M_contig123745:2..5151622815755.8726237-CDS-M-pyrifera_M_contig123745:2..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123745 3..515 +
1692277554.470669-CDS-M-pyrifera_M_contig123745:2..5151692277554.470669-CDS-M-pyrifera_M_contig123745:2..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123745 3..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123745.4854.1prot_M-pyrifera_M_contig123745.4854.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123745 3..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123745.4854.1

>prot_M-pyrifera_M_contig123745.4854.1 ID=prot_M-pyrifera_M_contig123745.4854.1|Name=mRNA_M-pyrifera_M_contig123745.4854.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
AWANDRGVKIHDCRTGQRITYIDRPKGSPRPDLYRCNLCWESDDLLLIGW
ADSIKIGQVKERRNTSGGLPTRYVEIVAMIQTEYRICGIAPFGEYLVVLA
YLEERNEKGEALRPELRIITRSNEKVSSDALTILGFEHYAATNYRLDHMA
SESLFYIVSPKVCGWRGRGE*
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mRNA from alignment at M-pyrifera_M_contig123745:3..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123745.4854.1 ID=mRNA_M-pyrifera_M_contig123745.4854.1|Name=mRNA_M-pyrifera_M_contig123745.4854.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig123745:3..515+ (Macrocystis pyrifera P11B4 male)
GCGTGGGCCAACGACAGAGGAGTGAAGATCCACGACTGTAGGACAGGGCA
GAGGATCACTTACATCGACAGACCAAAGGGAAGCCCCAGACCAGACCTCT
ATCGCTGTAATCTCTGCTGGGAGAGCGACGATCTCCTCCTCATTGGATGG
GCTGACAGCATCAAGATTGGACAAGTGAAAGAACGGCGTAACACAAGTGG
GGGACTGCCCACTCGCTATGTGGAGATCGTGGCCATGATCCAGACAGAGT
ATCGCATCTGTGGCATCGCCCCCTTTGGTGAGTACCTCGTCGTCCTTGCT
TATCTCGAGGAACGCAACGAGAAGGGCGAGGCTTTGAGGCCAGAACTCCG
TATCATCACCCGCTCCAACGAAAAGGTCTCCAGCGACGCACTCACCATCC
TTGGCTTCGAACACTACGCTGCCACCAACTACCGCCTCGACCACATGGCC
AGCGAGTCTCTCTTTTACATCGTCAGCCCCAAGGTATGTGGCTGGAGGGG
GAGGGGAGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123745:3..515+

>mRNA_M-pyrifera_M_contig123745.4854.1 ID=mRNA_M-pyrifera_M_contig123745.4854.1|Name=mRNA_M-pyrifera_M_contig123745.4854.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig123745:3..515+ (Macrocystis pyrifera P11B4 male)
GCGTGGGCCAACGACAGAGGAGTGAAGATCCACGACTGTAGGACAGGGCA
GAGGATCACTTACATCGACAGACCAAAGGGAAGCCCCAGACCAGACCTCT
ATCGCTGTAATCTCTGCTGGGAGAGCGACGATCTCCTCCTCATTGGATGG
GCTGACAGCATCAAGATTGGACAAGTGAAAGAACGGCGTAACACAAGTGG
GGGACTGCCCACTCGCTATGTGGAGATCGTGGCCATGATCCAGACAGAGT
ATCGCATCTGTGGCATCGCCCCCTTTGGTGAGTACCTCGTCGTCCTTGCT
TATCTCGAGGAACGCAACGAGAAGGGCGAGGCTTTGAGGCCAGAACTCCG
TATCATCACCCGCTCCAACGAAAAGGTCTCCAGCGACGCACTCACCATCC
TTGGCTTCGAACACTACGCTGCCACCAACTACCGCCTCGACCACATGGCC
AGCGAGTCTCTCTTTTACATCGTCAGCCCCAAGGTATGTGGCTGGAGGGG
GAGGGGAGAGTAGGCGTGGGCCAACGACAGAGGAGTGAAGATCCACGACT
GTAGGACAGGGCAGAGGATCACTTACATCGACAGACCAAAGGGAAGCCCC
AGACCAGACCTCTATCGCTGTAATCTCTGCTGGGAGAGCGACGATCTCCT
CCTCATTGGATGGGCTGACAGCATCAAGATTGGACAAGTGAAAGAACGGC
GTAACACAAGTGGGGGACTGCCCACTCGCTATGTGGAGATCGTGGCCATG
ATCCAGACAGAGTATCGCATCTGTGGCATCGCCCCCTTTGGTGAGTACCT
CGTCGTCCTTGCTTATCTCGAGGAACGCAACGAGAAGGGCGAGGCTTTGA
GGCCAGAACTCCGTATCATCACCCGCTCCAACGAAAAGGTCTCCAGCGAC
GCACTCACCATCCTTGGCTTCGAACACTACGCTGCCACCAACTACCGCCT
CGACCACATGGCCAGCGAGTCTCTCTTTTACATCGTCAGCCCCAAGGTAT
GTGGCTGGAGGGGGAGGGGAGAGTAG
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