mRNA_M-pyrifera_M_contig123740.4852.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123740.4852.1
Unique NamemRNA_M-pyrifera_M_contig123740.4852.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A7Y2N8R5_9ACTN (MFS transporter n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N8R5_9ACTN)

HSP 1 Score: 140 bits (354), Expect = 2.870e-37
Identity = 73/161 (45.34%), Postives = 106/161 (65.84%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGIAPMIAIN 483
            R++ N  +RF FTF+ AISRG+GLS  QL +I ++RD++G+ AP+VG+   R G  RVM +   +   + L +  G+ G AIG +  G  K+ FDV +N WVG+ VAY RRAR SG++E+ WALAALVG+P+ G+LID F W     ++G L +   +A+ 
Sbjct:   25 RWLGNTVIRFPFTFLPAISRGSGLSIDQLSLILSMRDLTGLTAPSVGRAADRFGPGRVMVVFGWLGAAATLASALGSYGLAIGFVVFGFAKIGFDVALNGWVGEEVAYRRRARVSGIIELTWALAALVGIPVVGLLIDGFSWWLPAVVIGGLSLPATMALQ 185          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A520Y5A9_9ACTN (MFS transporter n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520Y5A9_9ACTN)

HSP 1 Score: 125 bits (315), Expect = 1.280e-31
Identity = 69/159 (43.40%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGIAPMIA 477
            RFVSN G R  F+F+ AI+RGTGLS  ++G I  LRD++G+ A  +G++  R G  + M  G  +     L+A  G  G  +G +  G G+L+  + M  W+GD VAY +R RA+GLVE+ WA AAL+G+P+ GVLID F W     +LG+  I   +A
Sbjct:   22 RFVSNTGGRMVFSFLPAITRGTGLSVEEMGQILFLRDLTGLAAGRIGRVIDRWGQRKAMVGGGLLLGIGLLLAMLGPVGVLVGFVLFGFGRLSLGISMTAWIGDEVAYAQRGRATGLVELTWAGAALIGVPICGVLIDVFDWWTPFLVLGVATIGFSLA 180          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A2E7MS02_9ACTN (MFS domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7MS02_9ACTN)

HSP 1 Score: 107 bits (268), Expect = 1.020e-24
Identity = 63/148 (42.57%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVM-----GIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQ 429
            RFVSN+  R  F F+  I+RG G+S   LG   ALRD+  +  PA+GK+T R GT RVM     G+G A        A++G   F   +IA  I K++FDVG +TW G  V +  R+RA G+VE  WA + +VG+PL+ +LI    W+
Sbjct:   29 RFVSNVAYRMVFPFLPTIARGIGVSTATLGTTLALRDLVEISGPALGKLTDRQGTKRVMVAALCGLGMAACLQG---ASNGLVVFTFALIAISISKVSFDVGSSTWTGASVPFSDRSRAVGIVETTWAFSFIVGMPLAALLIRLGTWR 173          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A2E7HVN2_9ACTN (MFS domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7HVN2_9ACTN)

HSP 1 Score: 107 bits (266), Expect = 1.960e-24
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVM-----GIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQ 429
            RFVSN+  R  F F+  I+RG G+S   LG   ALRD+  +  PA+GK+T R GT RVM     G+G A         ++G   F   +IA  + K++FDVG +TW G  V +  R+RA G+VE  WAL+ ++G+PL+ +LI    W+
Sbjct:   29 RFVSNVAYRIVFPFLPTIARGIGVSTATLGTTLALRDLVEISGPALGKLTDRQGTRRVMVAALCGLGMAACLQGV---SNGLVVFTFALIAISVSKVSFDVGSSTWTGASVPFSGRSRAIGIVETTWALSFIIGMPLAALLIRLGTWR 173          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A7Y3DGL4_9ACTN (MFS transporter n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y3DGL4_9ACTN)

HSP 1 Score: 95.1 bits (235), Expect = 3.810e-20
Identity = 57/145 (39.31%), Postives = 82/145 (56.55%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVA-TSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQA 432
            R V N G R  + F+ AISRG G+S  + G++ ++R+++G   P V    + S  + +    T  A  + + + TS   G   G I  G+GK  FDVG  T++ D   YERRAR    +E+ WA   LVG P+SG LID+FGW+A
Sbjct:   15 RLVLNTGYRLVYPFLPAISRGLGVSVDRAGLLVSVRNLAGAATPVVVAAGRHSTRILIALAITLFALGAAITSVTSAFWGAFAGFILMGLGKPAFDVGAMTYLADRTPYERRARYLATIELTWAGGLLVGAPVSGWLIDRFGWEA 159          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A349BBL2_9ACTN (MFS domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BBL2_9ACTN)

HSP 1 Score: 94.0 bits (232), Expect = 1.110e-19
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVAT--SGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGIAPMIAIN 483
            R V  + +RFA+ F+ AI+ G  +  G +G+  A  + +G+ AP VG+   R G  R M  G  I      VA    G  GF IG+    +G+  +D+ M  W+GD V + RR RASG+ E+ W+ A L+G+P++G+++    W+    L  L+ +A +  + 
Sbjct:   17 RLVGTVSLRFAYPFLPAIADGLDVGIGAVGLALAAGEGAGLLAPLVGRRLDRIGRRRGMTDGLVIGAVGCAVAAIAPGVVGFGIGLFGIAVGRAFYDISMGAWIGDEVEFARRGRASGIGELAWSGAFLLGVPVAGLVMSATSWRVPYLLSALVMLASIPVVR 179          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A350XSU7_9ACTN (MFS domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A350XSU7_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 3.130e-19
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAP-AVGKITQRSGTVRVMGIGTAIATTSYLV--ATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQA 432
            R V N G RF F F+ AISRG G+S  Q G++ + R +S V  P  VG + +     R++  G A+      +  AT    G  +G I  G+GK TFD     +V D   +ERRAR   ++E+ WA   LVG P++G LI ++GW+A
Sbjct:   27 RLVVNTGHRFVFPFLPAISRGLGISLEQSGLLLSARSLSFVATPLVVGTVGRGERRARLIVFGLALLAVGAAITAATGAVAGALVGFILLGMGKPTFDAAAQAYVADRAPFERRARYLSVLELTWAGGMLVGAPVTGWLIAEWGWRA 173          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A0S6WAG8_9BACT (Major facilitator superfamily MFS_1 n=1 Tax=Candidatus Vecturithrix granuli TaxID=1499967 RepID=A0A0S6WAG8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 5.600e-19
Identity = 56/165 (33.94%), Postives = 92/165 (55.76%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVM----GIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGIAPMIAIN 483
            R V N   RFA+ F   +SRG G+    +  + A+   + +    +G IT R G  R+M    G+ T   TT+      GA   A+ +  +G+GK  FD  M +++ ++V +ERRARA G++E  WA + L+G+PL  +LID+ GW+A   LL  +G+  ++ ++
Sbjct:   12 RLVLNTARRFAYPFAPVLSRGLGVPLTAITSLIAVNQATTIFGLLIGPITDRLGYRRMMLAGLGVLTLGMTTASFFPVYGAVFLALAL--AGLGKTMFDPAMQSYISELVPFERRARAMGILEFAWAGSTLIGIPLIAILIDRLGWRAPFFLLSGIGVLSLLTLS 174          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A136KSI3_9CHLR (Major facilitator transporter n=1 Tax=Chloroflexi bacterium OLB14 TaxID=1617415 RepID=A0A136KSI3_9CHLR)

HSP 1 Score: 83.2 bits (204), Expect = 8.740e-16
Identity = 51/156 (32.69%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVATSGAT--GFAIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGI 462
            R + N   R  + F+   +RG G++   + II  LR + G  +P    I  + G    M +G +I     L+ T   +    AI ++ + IGK  FD  M  + GD + Y +R  A  + E+ W+ A ++G+PL G LIDQFGW A   +  LLG+
Sbjct:   12 RTILNTAHRMVYPFLSVFARGLGVNLETMSIIMTLRSLVGAVSPLFAPIADKRGRKFGMLLGVSIFIAGMLIVTLRPSLWTLAIALMMAMIGKFIFDPSMQAYFGDRIPYHKRGTALAVTEVAWSFAFILGIPLVGFLIDQFGWSAPFPVFTLLGL 167          
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Match: A0A7C3JB61_9CHLR (MFS transporter n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3JB61_9CHLR)

HSP 1 Score: 80.9 bits (198), Expect = 7.930e-15
Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    1 RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKITQRSGTVRVMGIGTAIATTSYLVATSGATGF----AIGMIASGIGKLTFDVGMNTWVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLGLLGIAPMIAI 480
            R   N   RF + F  A+SRG  +    +  + A+   +G+ +P  G ++ R G   +M  G AI     + A  G   F     + ++ +G+ K  FD  +  ++ + V Y RR    GL+E+ WA A+LVG+PL G+LID+ GWQ    +LG L +  M AI
Sbjct:   87 RLFINTSRRFVYPFAPALSRGLDVPLTAVTSLIAVNQFTGILSPFFGPLSDRWGYRVMMLAGLAILAVGMVSA--GILPFYGTVLLALLFAGLTKAIFDPALQAYIAEQVPYRRRGTVMGLIELSWAGASLVGIPLIGILIDRLGWQTPFLVLGGLALLSMAAI 248          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123740.4852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N8R5_9ACTN2.870e-3745.34MFS transporter n=1 Tax=Acidimicrobiales bacterium... [more]
A0A520Y5A9_9ACTN1.280e-3143.40MFS transporter n=2 Tax=Acidimicrobiales bacterium... [more]
A0A2E7MS02_9ACTN1.020e-2442.57MFS domain-containing protein n=1 Tax=Acidimicrobi... [more]
A0A2E7HVN2_9ACTN1.960e-2441.22MFS domain-containing protein n=6 Tax=Acidimicrobi... [more]
A0A7Y3DGL4_9ACTN3.810e-2039.31MFS transporter n=1 Tax=Acidimicrobiia bacterium T... [more]
A0A349BBL2_9ACTN1.110e-1933.13MFS domain-containing protein n=1 Tax=Acidimicrobi... [more]
A0A350XSU7_9ACTN3.130e-1938.78MFS domain-containing protein n=1 Tax=Actinomyceti... [more]
A0A0S6WAG8_9BACT5.600e-1933.94Major facilitator superfamily MFS_1 n=1 Tax=Candid... [more]
A0A136KSI3_9CHLR8.740e-1632.69Major facilitator transporter n=1 Tax=Chloroflexi ... [more]
A0A7C3JB61_9CHLR7.930e-1532.93MFS transporter n=1 Tax=Anaerolineae bacterium Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123740contigM-pyrifera_M_contig123740:29..511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score92.0
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog1499967.BAYZ01000019_gene6325
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Major facilitator Superfamily
EggNOG OGsCOG0477@1,COG2814@2
COG Functional cat.EGP
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.80061-CDS-M-pyrifera_M_contig123740:28..5111622815755.80061-CDS-M-pyrifera_M_contig123740:28..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123740 29..511 -
1692277554.4506416-CDS-M-pyrifera_M_contig123740:28..5111692277554.4506416-CDS-M-pyrifera_M_contig123740:28..511Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123740 29..511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123740.4852.1prot_M-pyrifera_M_contig123740.4852.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123740 29..511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123740.4852.1

>prot_M-pyrifera_M_contig123740.4852.1 ID=prot_M-pyrifera_M_contig123740.4852.1|Name=mRNA_M-pyrifera_M_contig123740.4852.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
RFVSNLGVRFAFTFIDAISRGTGLSHGQLGIIYALRDVSGVGAPAVGKIT
QRSGTVRVMGIGTAIATTSYLVATSGATGFAIGMIASGIGKLTFDVGMNT
WVGDVVAYERRARASGLVEMMWALAALVGLPLSGVLIDQFGWQAAPALLG
LLGIAPMIAIN
back to top

mRNA from alignment at M-pyrifera_M_contig123740:29..511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123740.4852.1 ID=mRNA_M-pyrifera_M_contig123740.4852.1|Name=mRNA_M-pyrifera_M_contig123740.4852.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig123740:29..511- (Macrocystis pyrifera P11B4 male)
CGCTTCGTGTCGAACCTCGGGGTTCGTTTCGCCTTTACGTTCATCGACGC CATCTCTCGGGGCACCGGACTCTCGCACGGGCAGCTCGGCATCATCTACG CCCTTCGAGACGTGAGTGGGGTCGGCGCGCCGGCCGTCGGCAAGATCACA CAGCGGTCGGGCACCGTCCGGGTCATGGGGATCGGCACCGCGATCGCCAC CACCAGCTACCTGGTCGCCACCTCGGGAGCCACCGGGTTCGCGATCGGCA TGATCGCGTCGGGCATCGGCAAGCTCACGTTCGACGTCGGAATGAACACC TGGGTCGGCGACGTCGTCGCCTACGAACGCCGAGCCCGAGCGAGCGGCCT GGTCGAGATGATGTGGGCGCTCGCTGCCCTCGTCGGGCTGCCGCTGAGCG GTGTCCTCATCGACCAATTTGGATGGCAGGCGGCACCGGCGCTTCTCGGC TTGTTGGGGATCGCCCCCATGATCGCGATCAAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123740:29..511-

>mRNA_M-pyrifera_M_contig123740.4852.1 ID=mRNA_M-pyrifera_M_contig123740.4852.1|Name=mRNA_M-pyrifera_M_contig123740.4852.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig123740:29..511- (Macrocystis pyrifera P11B4 male)
CGCTTCGTGTCGAACCTCGGGGTTCGTTTCGCCTTTACGTTCATCGACGC
CATCTCTCGGGGCACCGGACTCTCGCACGGGCAGCTCGGCATCATCTACG
CCCTTCGAGACGTGAGTGGGGTCGGCGCGCCGGCCGTCGGCAAGATCACA
CAGCGGTCGGGCACCGTCCGGGTCATGGGGATCGGCACCGCGATCGCCAC
CACCAGCTACCTGGTCGCCACCTCGGGAGCCACCGGGTTCGCGATCGGCA
TGATCGCGTCGGGCATCGGCAAGCTCACGTTCGACGTCGGAATGAACACC
TGGGTCGGCGACGTCGTCGCCTACGAACGCCGAGCCCGAGCGAGCGGCCT
GGTCGAGATGATGTGGGCGCTCGCTGCCCTCGTCGGGCTGCCGCTGAGCG
GTGTCCTCATCGACCAATTTGGATGGCAGGCGGCACCGGCGCTTCTCGGC
TTGTTGGGGATCGCCCCCATGATCGCGATCAATCGCTTCGTGTCGAACCT
CGGGGTTCGTTTCGCCTTTACGTTCATCGACGCCATCTCTCGGGGCACCG
GACTCTCGCACGGGCAGCTCGGCATCATCTACGCCCTTCGAGACGTGAGT
GGGGTCGGCGCGCCGGCCGTCGGCAAGATCACACAGCGGTCGGGCACCGT
CCGGGTCATGGGGATCGGCACCGCGATCGCCACCACCAGCTACCTGGTCG
CCACCTCGGGAGCCACCGGGTTCGCGATCGGCATGATCGCGTCGGGCATC
GGCAAGCTCACGTTCGACGTCGGAATGAACACCTGGGTCGGCGACGTCGT
CGCCTACGAACGCCGAGCCCGAGCGAGCGGCCTGGTCGAGATGATGTGGG
CGCTCGCTGCCCTCGTCGGGCTGCCGCTGAGCGGTGTCCTCATCGACCAA
TTTGGATGGCAGGCGGCACCGGCGCTTCTCGGCTTGTTGGGGATCGCCCC
CATGATCGCGATCAAT
back to top