mRNA_M-pyrifera_M_contig123711.4851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123711.4851.1
Unique NamemRNA_M-pyrifera_M_contig123711.4851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig123711.4851.1 vs. uniprot
Match: A0A6H5K0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D3_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.350e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QISELATRGKVTTESGGQRDLTTKELREMSRQMYLPKRAEKELKLLEAQLQDEEDLF 171
            QISELATRGKVT+ESG QRDLTTKELRE+SRQMYLPKRAEKELKLLEAQLQDEE LF
Sbjct:  315 QISELATRGKVTSESGEQRDLTTKELREISRQMYLPKRAEKELKLLEAQLQDEESLF 371
[Close]
BLAST of mRNA_M-pyrifera_M_contig123711.4851.1 vs. uniprot
Match: D8LHZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.450e-22
Identity = 53/57 (92.98%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    1 QISELATRGKVTTESGGQRDLTTKELREMSRQMYLPKRAEKELKLLEAQLQDEEDLF 171
            QISELATRGKVT+ESG QRDLTTKELRE+SRQMYLPKRAEKELKLLEAQLQDEE LF
Sbjct:  245 QISELATRGKVTSESGEQRDLTTKELREISRQMYLPKRAEKELKLLEAQLQDEESLF 301
[Close]
BLAST of mRNA_M-pyrifera_M_contig123711.4851.1 vs. uniprot
Match: A0A835YTF2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTF2_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.420e-8
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 QISELATRGKVTTESGGQR-----DLTTKELREMSRQMYLPKRAEKELKLLEAQLQDEEDLF 171
            Q+ ELATRG +    GG       +L+  E+R +SRQ+YLPKRA+KEL+LLE QL+DEE+LF
Sbjct:  206 QVQELATRGVLRGAGGGXXXXXXXELSMAEMRALSRQVYLPKRADKELRLLEMQLRDEEELF 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig123711.4851.1 vs. uniprot
Match: A0A7S3H044_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H044_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.450e-7
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 QISELATRGKVTTESGGQRDLTTKELREMSRQMYLPKRAEKELKLLEAQLQDEEDLF 171
            QI ELATRG ++ +  G    T  +LRE+SRQ YL KR EKELKLLE  L+DE +LF
Sbjct:  132 QIHELATRGALSDKGAG--TSTIDQLREISRQHYLEKREEKELKLLEMSLRDEAELF 186
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123711.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K0D3_9PHAE5.350e-2292.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHZ7_ECTSI7.450e-2292.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTF2_9STRA1.420e-854.84P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3H044_9STRA8.450e-757.89Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123711contigM-pyrifera_M_contig123711:49..219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D8LHZ7
Preferred namecdc28
KEGG koko:K12813,ko:K12814
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016074,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0032991,GO:0034247,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042623,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070035,GO:0071006,GO:0071012,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.ATP-dependent RNA helicase activity
EggNOG OGsCOG1643@1,KOG0923@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.763851-CDS-M-pyrifera_M_contig123711:48..2191622815755.763851-CDS-M-pyrifera_M_contig123711:48..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123711 49..219 -
1692277554.4404075-CDS-M-pyrifera_M_contig123711:48..2191692277554.4404075-CDS-M-pyrifera_M_contig123711:48..219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123711 49..219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123711.4851.1prot_M-pyrifera_M_contig123711.4851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123711 49..219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123711.4851.1

>prot_M-pyrifera_M_contig123711.4851.1 ID=prot_M-pyrifera_M_contig123711.4851.1|Name=mRNA_M-pyrifera_M_contig123711.4851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
QISELATRGKVTTESGGQRDLTTKELREMSRQMYLPKRAEKELKLLEAQL
QDEEDLF
back to top

mRNA from alignment at M-pyrifera_M_contig123711:49..219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123711.4851.1 ID=mRNA_M-pyrifera_M_contig123711.4851.1|Name=mRNA_M-pyrifera_M_contig123711.4851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig123711:49..219- (Macrocystis pyrifera P11B4 male)
CAGATCTCCGAGCTGGCGACTCGAGGCAAGGTGACGACAGAGTCGGGGGG
GCAGAGAGACCTGACAACGAAGGAGCTGAGGGAGATGAGTCGACAGATGT
ACCTGCCCAAGCGAGCTGAGAAGGAGCTGAAGCTGCTGGAGGCTCAGCTA
CAGGACGAGGAGGACTTGTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123711:49..219-

>mRNA_M-pyrifera_M_contig123711.4851.1 ID=mRNA_M-pyrifera_M_contig123711.4851.1|Name=mRNA_M-pyrifera_M_contig123711.4851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig123711:49..219- (Macrocystis pyrifera P11B4 male)
CAGATCTCCGAGCTGGCGACTCGAGGCAAGGTGACGACAGAGTCGGGGGG
GCAGAGAGACCTGACAACGAAGGAGCTGAGGGAGATGAGTCGACAGATGT
ACCTGCCCAAGCGAGCTGAGAAGGAGCTGAAGCTGCTGGAGGCTCAGCTA
CAGGACGAGGAGGACTTGTTCCAGATCTCCGAGCTGGCGACTCGAGGCAA
GGTGACGACAGAGTCGGGGGGGCAGAGAGACCTGACAACGAAGGAGCTGA
GGGAGATGAGTCGACAGATGTACCTGCCCAAGCGAGCTGAGAAGGAGCTG
AAGCTGCTGGAGGCTCAGCTACAGGACGAGGAGGACTTGTTC
back to top