mRNA_M-pyrifera_M_contig1237.4848.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1237.4848.1
Unique NamemRNA_M-pyrifera_M_contig1237.4848.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: D7FPP9_ECTSI (Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP9_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 9.320e-82
Identity = 140/202 (69.31%), Postives = 158/202 (78.22%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKA-TLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALRK 603
            +GL+VDVEGF +KM+DEK KS  AR+NQKAAGGKPM+LEAE+MDWLSKR T AT  +GRYTWH QP AK   LF GKGEGEDG+GFV S S  AD    D Q VGVVLD +SFYAEGGGQI+D GELS  DGSGS  V+QV++FGAY LH+GQ +          GT+ VGS VVCKVDY+RRANVAPNHTMTHVLNFALRK
Sbjct:  458 KGLSVDVEGFDQKMSDEKTKSNQARSNQKAAGGKPMILEAEQMDWLSKRDTEATEASGRYTWHQQPAAKVLALFVGKGEGEDGVGFVPSASAVADE--ADQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSSFGAYTLHIGQVKA---------GTLSVGSDVVCKVDYERRANVAPNHTMTHVLNFALRK 648
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A6H5L0C8_9PHAE (Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C8_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 8.140e-54
Identity = 110/201 (54.73%), Postives = 127/201 (63.18%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKATLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALRK 603
            +GL+VDVEGF +KM+             KAAGGKPM+LEAE++                            LF GKGEGEDG+GFV S S   D    D Q VGVVLD +SFYAEGGGQI+D GELS  DGSGS  V+QV+ FGAY LH+GQ    +     + GT+ VGS VVCKVDY+RRANVAPNHTMTHVLNFALRK
Sbjct:  347 KGLSVDVEGFDQKMSXXXXXXXXXXXXXKAAGGKPMILEAEQV--------------------------LALFVGKGEGEDGVGFVPSASAVVDE--ADQQTVGVVLDCTSFYAEGGGQIYDIGELSLSDGSGSFAVRQVSNFGAYTLHIGQYYGAV---EVKAGTLSVGSDVVCKVDYERRANVAPNHTMTHVLNFALRK 516
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: W7TIB5_9STRA (Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIB5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 8.010e-42
Identity = 88/202 (43.56%), Postives = 121/202 (59.90%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKA-TLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALRK 603
            +GLTVD  GF   +A++K +S +A   +K  GGK +VLEAE+  WL  RG   T ++ +Y WHH+P+A+   L+ GK      +GFV   +            V V+L+ +SFYAE GGQI DTG ++  DG+ +L V  V ++G YVLH+G             G + VG T  C VDY+RRA +APNHTMTHVLN+ALR+
Sbjct:  464 KGLTVDRAGFETLLAEDKRQSAMAAAAKKEMGGKEIVLEAEQTAWLQSRGVEITDSSLKYVWHHEPSARVMALYKGKA-----VGFVEEVTAEDGV-------VAVILNTTSFYAEQGGQIHDTGVITNLDGTDTLRVDSVQSYGGYVLHIGPLES---------GALRVGDTATCMVDYERRARIAPNHTMTHVLNYALRR 644
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A7R9U5A7_9STRA (Alanine--tRNA ligase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5A7_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.130e-40
Identity = 97/206 (47.09%), Postives = 121/206 (58.74%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAAG--GKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKA-TLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGS---LCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALR 600
            Q + +D EGF  KMA+E  KS  A   +KAAG   K M LEAE+  WL+ +G   + T G+Y W+  PT      F G+G G+DGIGF  S S      P D + VG+VLD +SFYAE GGQIFDTG +    G+ +   + V+ V  FG+YVLH+G            +G    GS V C VDY RR  VAPNHTMTHVLN+ALR
Sbjct:  531 QKMAIDKEGFEAKMAEEVEKSHEAEKARKAAGLGSKEMFLEAEQTSWLANQGFGPSETRGKYNWNSTPTVTVQACFLGRGLGKDGIGFADSVS------PGD-EVVGLVLDSTSFYAEAGGQIFDTGVIRGASGAEANAIMRVESVQVFGSYVLHIGVVE---------MGAFTPGSRVTCMVDYARRERVAPNHTMTHVLNYALR 720
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A835Z4U5_9STRA (Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.770e-40
Identity = 88/202 (43.56%), Postives = 120/202 (59.41%), Query Frame = 1 
Query:    4 GLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKAT-LFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTV--VCKVDYDRRANVAPNHTMTHVLNFALR 600
            GLTVD+  +  KM ++K KS  A   ++AAGG  + +EAE+   L+ +G A T +  +YTWHH P+AK   L+AGKG+G  G GFV         +  + + VG++LD + FYAE GGQ++DTG L  ED S  + V  V  +G YVLH G    + +   + +            C VDYDRR+ VAPNHTMTHVLN+ALR
Sbjct:  448 GLTVDMVEYHAKMEEDKAKSAAAEVARRAAGGTALTMEAEQTSALAAKGVAGTESEAKYTWHHTPSAKVVALYAGKGKGALGDGFVE--------EAVEGERVGIILDTTPFYAEQGGQVYDTGSLDAEDLS--VEVVNVQTYGGYVLHTGIVSGKALAVGTTVXXXXXXXXXXXTCSVDYDRRSRVAPNHTMTHVLNYALR 639
[Close]
BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A7S4GJP2_9EUGL (Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJP2_9EUGL)

HSP 1 Score: 150 bits (380), Expect = 1.850e-38
Identity = 93/201 (46.27%), Postives = 114/201 (56.72%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKA-TLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALR 600
            +GL +D EGF +KM +E   S +A   +K AGGK + L AE+   L + G   T    +Y WH  P+A    LF G GEGE G+GFV      ADA       VGVVLD S FY E GGQ+ DTG L    G G++ V+    +G +VLH G         S   G + VG  V C VDY+RRA+VAPNHTMTHVLN ALR
Sbjct:  510 RGLVLDREGFAKKMKEEAEISAIAAQQRKLAGGKDLRLGAEQTAHLQQTGVEVTDAGDKYNWHVTPSATVKALFIGVGEGEGGLGFVD----VADAS---TGPVGVVLDASPFYPEAGGQVADTGRLQ---GPGTMHVENTQIYGGFVLHTG---------SVPTGELRVGDAVQCAVDYERRAHVAPNHTMTHVLNHALR 691
[Close]
BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: F0Y844_AURAN (Alanine--tRNA ligase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y844_AURAN)

HSP 1 Score: 146 bits (368), Expect = 7.520e-37
Identity = 89/204 (43.63%), Postives = 117/204 (57.35%), Query Frame = 1 
Query:    1 QGLTVDVEGFTRKMADEKMKSGLARTNQKAA--GGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQPTAKAT-LFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALRK 603
            +G+TVDV G+   + +E+ K+  A   +KAA   G  M   AE+   L+  G   T + G+Y W+ +P AK   L+ GKG G  G G V +       DP      G VLD +SFYAE GGQ++DTG L  +D +  L V+ V  +G YV+HVG          + LG ++VG  V C VDYDRR  VAPNHTMTHVLNFALR+
Sbjct:  482 RGMTVDVAGYHAALKEEQDKNAAALAKRKAARSAGADMTCAAEQTAALAAAGAPKTESEGKYVWNARPAAKVVALYVGKGGGPKGDGLVDA------VDPSKHAVAGAVLDATSFYAEMGGQVYDTGAL-LKDDAKILDVEDVQVYGGYVVHVG----------APLGPLKVGDDVACAVDYDRRVRVAPNHTMTHVLNFALRE 668
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A7S1CUN9_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CUN9_CYCTE)

HSP 1 Score: 136 bits (342), Expect = 1.560e-36
Identity = 86/203 (42.36%), Postives = 111/203 (54.68%), Query Frame = 1 
Query:    7 LTVDVEGFTRKMADEKMKSGLA-RTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQP---TAKATLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALRK 603
            L +D EGF  KM  E+  S  A +     + GK M L AE+   L  +G   T    +Y W       TAKA LF G+ E ED IGFV S S        +   VG++LD ++FY E GGQ+FDTG +    G  +L V+ V  +G +VLHVG   +         GT  VG + VCKVDYDRR  +A NHTMTH+LN+AL+K
Sbjct:   26 LNIDKEGFEAKMKQEQELSAAAHQAKMSGSSGKDMRLVAEQTAALVGKGVEPTNDEPKYNWDADLEGCTAKA-LFIGRNETEDKIGFVDSMS-------SENGTVGIILDKTAFYGESGGQVFDTGAIVSSSGGATLNVENVQVYGQFVLHVGTIAEG--------GTFTVGDSCVCKVDYDRRRPIASNHTMTHILNYALKK 212
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BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A7S4ME88_9STRA (Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ME88_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.730e-36
Identity = 89/202 (44.06%), Postives = 117/202 (57.92%), Query Frame = 1 
Query:    4 GLTVDVEGFTRKMADEKMKSGLA-RTNQKAAGGKPMVLEAEEMDWLSKRGTAATATAGRYTWHH--QPTAKATLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALR 600
            GLT+D EGF  KM DE+ KS  A R      GGK M L AE+  +L  +G  AT    +Y W+   +    A LF G+GE EDGIGF       AD+   +   VG++LD +SFYAE GGQ +DTG +    G+  + +  V ++G +VLHVGQ  +         GTV +G  ++C VDY RR  +A NHTMTHVLN+ALR
Sbjct:  439 GLTLDREGFDAKMKDEQDKSAEAHRLKMMGKGGKDMRLVAEQTAYLVNKGVDATDDEAKYVWNKDLEGCKAAALFVGRGETEDGIGF-------ADSITGENGAVGLILDKTSFYAEAGGQTYDTGVIKTAGGA-VVRIDNVQSYGQFVLHVGQVTE---------GTVALGEELICSVDYVRRTPIASNHTMTHVLNYALR 623
[Close]
BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Match: A0A7S1ZG71_TRICV (Alanine--tRNA ligase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZG71_TRICV)

HSP 1 Score: 143 bits (361), Expect = 6.540e-36
Identity = 88/202 (43.56%), Postives = 117/202 (57.92%), Query Frame = 1 
Query:    4 GLTVDVEGFTRKMADEKMKSGLARTNQKAAG-GKPMVLEAEEMDWLSKRGTAATATAGRYTWHHQ--PTAKATLFAGKGEGEDGIGFVRSKSCTADADPKDLQNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHVGQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALR 600
            GLT+D EGF  KM +E+ KS  A   +   G GK M L AE+   L   G  AT    +Y W+ +    A   LF G+GE EDG+GFV S +  +         VG+VLD ++FYAE GGQI+DTG +    G G + V  V A+G +VLH+G+  +         GTV +G  ++C VDY RR+ +A NHTMTHVLNFAL+
Sbjct:  513 GLTLDREGFDAKMKEEQDKSAEAHRKKMMGGSGKDMRLVAEQTARLVSDGVEATDDEAKYMWNQELGGCAAKALFVGRGETEDGVGFVPSINAESGM-------VGLVLDKTAFYAEAGGQIYDTGSIK-TSGGGVVRVDNVQAYGQFVLHIGEVTE---------GTVNLGDELICCVDYKRRSPIAANHTMTHVLNFALK 697
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1237.4848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPP9_ECTSI9.320e-8269.31Alanine--tRNA ligase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L0C8_9PHAE8.140e-5454.73Alanine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
W7TIB5_9STRA8.010e-4243.56Alanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A7R9U5A7_9STRA1.130e-4047.09Alanine--tRNA ligase (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z4U5_9STRA1.770e-4043.56Alanine--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4GJP2_9EUGL1.850e-3846.27Alanine--tRNA ligase n=1 Tax=Eutreptiella gymnasti... [more]
F0Y844_AURAN7.520e-3743.63Alanine--tRNA ligase n=2 Tax=Aureococcus anophagef... [more]
A0A7S1CUN9_CYCTE1.560e-3642.36Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S4ME88_9STRA4.730e-3644.06Alanine--tRNA ligase n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1ZG71_TRICV6.540e-3643.56Alanine--tRNA ligase n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1237contigM-pyrifera_M_contig1237:117..9317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue4e-33
Seed eggNOG ortholog44056.XP_009036762.1
KEGG rclassRC00055,RC00523
KEGG koko:K01872
KEGG ReactionR03038
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.alanyl-tRNA aminoacylation
EggNOG OGsCOG0013@1,KOG0188@2759
EC6.1.1.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons5
Model size627
Cds size627
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1237.4848.1prot_M-pyrifera_M_contig1237.4848.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1237 117..9317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.3174553-CDS-M-pyrifera_M_contig1237:116..2421622815755.3174553-CDS-M-pyrifera_M_contig1237:116..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 117..242 +
1692277554.1991372-CDS-M-pyrifera_M_contig1237:116..2421692277554.1991372-CDS-M-pyrifera_M_contig1237:116..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 117..242 +
1622815755.3273864-CDS-M-pyrifera_M_contig1237:6371..64561622815755.3273864-CDS-M-pyrifera_M_contig1237:6371..6456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 6372..6456 +
1692277554.216325-CDS-M-pyrifera_M_contig1237:6371..64561692277554.216325-CDS-M-pyrifera_M_contig1237:6371..6456Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 6372..6456 +
1622815755.3373342-CDS-M-pyrifera_M_contig1237:7225..73711622815755.3373342-CDS-M-pyrifera_M_contig1237:7225..7371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 7226..7371 +
1692277554.2259207-CDS-M-pyrifera_M_contig1237:7225..73711692277554.2259207-CDS-M-pyrifera_M_contig1237:7225..7371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 7226..7371 +
1622815755.3502634-CDS-M-pyrifera_M_contig1237:8085..82191622815755.3502634-CDS-M-pyrifera_M_contig1237:8085..8219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 8086..8219 +
1692277554.235797-CDS-M-pyrifera_M_contig1237:8085..82191692277554.235797-CDS-M-pyrifera_M_contig1237:8085..8219Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 8086..8219 +
1622815755.361143-CDS-M-pyrifera_M_contig1237:9181..93171622815755.361143-CDS-M-pyrifera_M_contig1237:9181..9317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 9182..9317 +
1692277554.2453418-CDS-M-pyrifera_M_contig1237:9181..93171692277554.2453418-CDS-M-pyrifera_M_contig1237:9181..9317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1237 9182..9317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1237.4848.1

>prot_M-pyrifera_M_contig1237.4848.1 ID=prot_M-pyrifera_M_contig1237.4848.1|Name=mRNA_M-pyrifera_M_contig1237.4848.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp
QGLTVDVEGFTRKMADEKMKSGLARTNQKAAGGKPMVLEAEEMDWLSKRG
TAATATAGRYTWHHQPTAKATLFAGKGEGEDGIGFVRSKSCTADADPKDL
QNVGVVLDVSSFYAEGGGQIFDTGELSFEDGSGSLCVKQVTAFGAYVLHV
GQARQRIITFSSRLGTVEVGSTVVCKVDYDRRANVAPNHTMTHVLNFALR
KARTWYIT*
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mRNA from alignment at M-pyrifera_M_contig1237:117..9317+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1237.4848.1 ID=mRNA_M-pyrifera_M_contig1237.4848.1|Name=mRNA_M-pyrifera_M_contig1237.4848.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=9201bp|location=Sequence derived from alignment at M-pyrifera_M_contig1237:117..9317+ (Macrocystis pyrifera P11B4 male)
CAGGGTCTGACTGTTGATGTGGAGGGATTCACTCGCAAAATGGCGGACGA
GAAAATGAAGAGCGGACTCGCACGGACCAATCAAAAGGCTGCAGGGGGGA
AGCCGATGGTCCTGGAAGCTGAAGAGGTGGGACAACTGTTGACCGTTGAC
TGTTGGCTGTTGACTGATGGTTGTTCACTGATGGTTGTTGACTGATGATT
GTATTTATTGACCCCGTTGGGACTTGATTAACTTGATTATAATACAGAAG
GGGTACAGCGGAAAACTGTCGCATACAAGTGACTCGATTCTAATACACTA
CAGCATCGACCACACTACGCCCTCCTCTAAGGCTGTTTCCTATGCGGTTC
GATTTTTGAGCTTCAGATCTTGACCCGCTCGCATTTTCAGATGTTAACTT
GGCAAATCGAAACAGTCTTCCTAGAGCTAGACCTCGCACATGGAAATAGA
CAACGAAGAACTGATGTCGGCTTGGAACCTAGAGTTGTACTCGATAACAT
CTGGTGGATACGTCACGTGAGTGGATGCTGTGCTACCCGATCAATGAGTT
TCAACGATTTCGTCTAGAGACTTTGTTCTCGGTTGAAGGGAAATATTTGA
CTCGCCTACGTAGCTGAAAAAATATCGCTCCATGGACAGATGCGTATTTA
TGAGTACAAAGTCTGAAACATAGCTTACCACTAGTCAAGTGATGAATGCC
AACAACTTGCAACACGTGAAGACATTCAAAAACTATAATAGCAATAAAAC
TGTGAAGATATAGGAGAGCCGCTTGTACTGCAGTGGTTGCAATTTGAGCC
TTTGAGCTCATGTGCCGACATTTTGTTGAAGCGCAATACAGAATACGTCA
CTCCCATCGCCCATCATAAGTGCTCCGTGAGTAATCGCACTACGTCCACT
TCACGTTCTACCAACAAATGGTCTACAGTACAGTAATTCTACCCGCTGTT
GCCCCCGGCTATTACAAGAGGCGAAAAACTTTGATCAGCGATCTAGGTGT
CAATGCCCTAATATCTGTTTGAATGATGACCAGACAAAGCACTTACGTCG
AAGCTACCATCGGCAAGACCCGCAACATGTACTTGTTGGTATCTGATACG
TTACGGCACAAGAATATGTGCGGCGTAACCTGGGTCAACGAGCTTCAACT
CATGTAGAGAATATCTTGTAGCGGAATATATGACTCCCCCTTGCTCGATA
TAATCGCTGCATGGGTAGACTAATCGCAACACGTGCTGAGCAACAGACGG
ATCATGTCCTGAGCCAATGAGCGTCAGCTCATGTAGCTCTTATGTTAAAG
CGGAATGTACTACTTCCCCTTAGCTCGACAAAATCGCTTCATGGGTACAC
TAATCGCAACATGTATGCTGAGAAACAACATTTATAAACAGAGTCTGGGC
AGCAGTAGACTTGAAAGAAAAACAAAAGAACATAATCAAAAACAAATATT
AAAACAATGAACAGCACAAAGGTTTCAGCTAGTGACAACCCCCGACATCA
CCAGTCATTCCTTCATCCTCGTTGTCTCGGGGGTCGGTACGACATCATGA
TGACCACCAAACGCATTGCATGAATGACAGGAAGCATTCGGAACACCTGT
TACAACTTCAGAAACTCAAATGCCACTGTCTGTTTGCAACCTGGACATAC
GTACTTGGTTCTCCAGCAGTGCTCTTCAATTGCTAAAGGACCAGCAGCTA
CGTCTGGAAGCCATCTTCCCTTCCAATCTCAACCTCAAGTCTGGGTGTTC
AACTTAAGTTTTTGACCGTTTATAGTTGTCCAGCCTTGCAACAAGGAAGT
GAGCGACCATCCGCTCACGCTGGGTCCATTGGCTCGAGTATTGCGTTGAA
CTAGGCCGTTTGAAGCCGACCATGCCAAGCAACCGATGCAGTACGTCTTA
GCTTCTGTAGCTATATTTGGATCAAGAAGCCCCTTTCAAGCAGCCTTTGC
CAAGCAGGCGATGCCAAGCAGCTGGAACAGTATTTGTGTAGGCTGTACCA
TCGGCACAGCAAAAGTGCTTGCTGTTGTACACATACTATTAATATACCCA
TTTGACACATCTTTGGCACTGTTTAACGTCACGTTACGGTCCTATTCATT
CTCAATGTAAGTGGATTAGTGGTAACCGAGAATGCAGGGCATAGTCTAGG
CTGTTAGTGAAGGAACATGTCTGCTGGATGATCTACCCTGATGTACCCGC
TACTAATACCACCTGAGCTTGAAGAATATCGCTTTGGTGGTAAGAGTTAG
CAGTTAGTAAGTGTTAAGAGTTCACACCTCGGATACCGTAACACTTACTT
AACGTAGTAACGTTTTATGTTAATGTTGGGCGTCAGCGAAACAAGATCGT
AACATTACGTTACTACGTTTACTACTTTCTGGATTTTGTGATAACAGTGT
TAGTGTGTATATTGGCGGGCGATCGCGTAACATTATGTTAGAGTGTCACC
TTGATCCCGTATTGACCGCAGTATATTTGTTGCGGTATTAGGGTATGCAG
CCCATAGCTAGTAACACTATGTATGTTAGCAGAACTCCTGGTGGTTATCG
TAACACACGTTGGAGGGACAGCGTGCATCATCAATAAAACGTAAACATTG
TGTTACCGTGTTAGACATCAGCCCGTAGCGAGTAACGTTATGTTCGTGTG
TCAGCGGAATTATTACCTGTTATCGCAACACAATCTAGACGGATATCGTA
TATGGCCTGTTGAACGTTTATATACCACTATGTTAGTGTACTAGTGGAAT
TCCTATTGGCTATCGTAACACACGTTGGAGGGATGACGTTTTTATATGGC
TAATTTAACGTTGGCTTTATGTTACCGTATCAACCGCAGCAGCAGTCCGT
GTCGAGCGGCGTTATGTTTGGGTGTGAACGGAACTCTTGCTACTATAACA
TACGTGAAATGGATAACGTACATAATGGATGAAGCGCTAGCATTATGTTG
CTGTGGTAGCTGGTATGCAAATTATATAGTAACACAAGATAGCAGACAAC
GCACATCCCCAATCGATCATCGACAATGTTACCCGGTACTGCTGTGTTGA
TTCGTATGTGCGAGTATGCAGATTACGTTGGAGATGAATAACGTACTGAC
CGGGTTTCCTAATTGTTTTGATCCCCTGTTGAGGGATTTCCAAAACACCA
AGGCGTTTTTTAACCGGAGATGCTATGTTATCCCCCCCCCGAGGATAAGT
TGTAGGCGTCCCCTACTGGGATCTCGGCGAAATTGGATAACACGGCTACA
TTACGTTGCTACCTAATTGTTTTGATCCCCTGTTGAGGGATTTCCAAAAC
ACCAAGGCGTTTTTTAACCGGAGATGCTATGTTTTCCCCCCCCCGAAGAT
AAGTTGTAGGCGTCCCCTACTGGGATCTCGGCGAAATTGGATAACACGGC
TACATTACGTTGCTTCGCGCCGCCGCTATCAACTAACATAGGTAACACAT
ACTAGACCTCGGGAAGATCCAAAGGGTAACGTCGCAACACAACGTTAGAA
CGACTTGGGTCCCAACGGTAACTAAAAAAACATAATGCTGGGCCCGGATT
GATTGTCATGGCAACACAGTAGCGAAATGTTATTATCAGACCTTTACTGA
CAGTAGCACCGTAACATGATGTTGAGGAGAGACCTCCGCATTTAGGCTAG
CATCCACTCCTACGTTGCTAACGTATGTTAAATGTTACGTTATCCGACCC
TATAGCCATCAGACGGGAGGTCCGAATAACGTAGGGTTAGAAGTGCTGGC
CACTACGTTATGTTACGCTAGTGTATTATTTGTAACACATTAATGTTAGG
TGTTAGTGCTGACCAGCACATGGTAACACTATGTTAGGGTATTCTGTGTA
ACGCTCCTTTTGAGGATAACGCAATGTTAGCGTGTTATGTCTAACGCTGC
GTACTTAGCAACATTATGTTATTGTTTTAATAACTCTGTGGATATCGATG
TGGGCTCGTTAGGGTGATAACGTACGTGTATGGTCAAAGCCCTAACGTTG
TGTTACAGTGTTGGTACAAGCACCGTTCACGGCGTAACATAATGTTAATG
TACCAGGGCTGGACGAGATCGAGCAGAAACTCAACGTTAAGGCGTGTGCA
CGTTCGTGGGTTTCCAGTTAACACTGTCACAGCGTTAACGTGATTGCTCC
TCCAGTGCCAGCACTATGTTAGCATGTGGCGACGTCCCTGCGTTAGGACC
CATAACGTAGATATGTGGTACCAGTATGTGTTATCGGAGTGTTGCGTTAT
TCAAGGCGTGTAAAGAGTTACCTACCAATCAGCAAGTAACACGTACTCGC
CACTTGAAGAAGGAACGGCAGATAGTAATACCTGGATGTAGTAGCAGCAG
GGGTAACCCGAAAAAAAAGACAACCACGGCGCCACAAATGCCATGATGTC
GGAATAAAAACCAAACTACACGTACGCGTAGCGGGTTGGGATTTTTATCG
GGAATATATAGGTTCCCCTTCGGGATGTGGGTAACGTGAAACCCCAGGGG
CGTCGCAAGGCGAAAAGGGAGTCACAGGTAACACGCATATAGCTGCTCTT
GGCGGAAATGTGCGCCACGGGTTAGTGTTTTGCTCGAAGGAAAGCGTAGT
AGTCAGCAGGAACTGAGTACTACTCTTTGTTTGGAGCAATACACTAACAA
CTCATGCCACACGTTTCTGCAACAGCAGCTGACGCGTGGCAACAGTAGTT
GGAGTCTATTATGGGGGCCCATAGTAAATAGGACCAAATATTGTCAGTAA
AAATAGGTAAATATATGGGTTTTTATGTATACCATAGGTCCTATTAATTA
TGGACCCCCGTAATAACATGTACTACCACTACTACTACTACTACTACTAC
TACTACTACTACTACTACTACTACTACTGCATGCCGGATGCACGCTATAA
ACATTTATGCGCTCGACATACGTGTACTGCTGCGGCTGTATCTGCTGCTG
CTGCTGCTGCTGAGGTTGATAATAAACCCAAAGGTGGACGGGTAAAATCG
GGCGATTTCAAAATTACTGAGATTTTGGACCCGGTGAAAATTCAGCAGAG
AAAGTTCTTCGTTGTTGAAAGTGCGCGCAGCTCGTCGTATCATACGTGTC
CTGACATTTTAATTGTACAACTCAGCCAGTGTGGGCCGTGCTAGATGCCA
CACCGACACACAGTACTGCGAGACAAGAGGCATATGGGCCTGGCTCTGTT
GCTCTTGCCCGTTGCGATTGCCTGCTGCTGAGAGCGTGCGACTGGACAAC
TACTGTAGCGACTAGCGGGTATGACAATACTTGTACATCCCTAAAAATAT
CCCAGGTAGACGGACCGAAAGAGGCAGTTTGGTGGTCACGAACGTGCTTG
GCGTTAGGTGTACGCTACTCCACAAAAATCTTGGTGCAACAGATAGGACG
GCCGACAGATGTGTACTGCTGTTGCTGCTGTATGTCTGCTGCTGCTACTG
CTACTTCTGATCTTTAGGTTAAAGACATATTACAGCGGAGGGGGCTTAAA
AAAATGTTCGAGGGTGGCAGGCTATTTACTAGTGAAAACAAAACGAAAAA
ATATGTGGGGTTTTGCATGTTACCTACTCGGCTCGGTGACGCGGAAACCT
TGTTTTTTAGAGCCAGCTCGGCGATGTTCAACGCCCCGAGCCCCTCAACG
GTGCTCGGCCAAGATCCAGACATGCGTCGTAATGTACCCACGCCCCCCTT
GCTTGCCCCGCTGCCGAAAGTGCGAGAAAGAACCCTCGGTAGCAGCATGC
CAAATAAACGAAAGTGCATATACGTAGATGTGTTTCTTGATCCCATGTGA
TGCTCAAAAACAAGCGCGGGTGTCGACTTTTTTTCCGTGCACTCGTGCCG
TACCCTTGGTAGTACTTGGTACAGCAGTAATAATGGTGGGGGCACTGCAC
CCTTGGTCTACATTCACTGGTTTCCCTGACTTCATCCAGTTGTGGTGCCG
CCCCCTCCCCCTTCCATTGGTGTATTCAATGTATTTCGATGTATTTAATG
CACTCAGTGATAGTAAGACACTATATGTAGCAATACACTACCGCTGTTTG
ACCATTCGATGACCGCTGGATGTTTACTTATAGCATGATGAGATGAAAAC
GCTTGAGCTTCACGTCGCGTGACACGATACGTTACCGGCTTGATTTGAAG
AAGATGCTGTAGCAATGGGGGTAGCTTCTTCCGTCCACGCATGACTCTCG
ATATCCCACAGTAGCCTGAACAACCTTTATTTCGTTCATTTTGGTGGCAT
CCCAGATGGACTGGCTTTCCAAGCGGGGCACCGCCGCGACGGCAACCGCT
GGTCGGTACACGTGGCATCATCAGCCCACCGCTAAGGCAAGTACTCATCA
CCACACTGCAGCAACACCACACCATGCCACGCCACACTACACCACACCGC
CCCACATCTCTTACCATATCATGCCTCTTGATAGTGTACACGGCAGTTTT
TTTTGTGGCTGGGTGTGGAGCTGTTCATCGACACCGCACTATTAGTGCTA
TTTGGCTGTTAGTGGGCTGTTAGTGGGCTGTTAATGCTGTTAGTGCTGCT
AGTGCTGTTAATGCTGTTAGTGCTCTTAGTGTTATAATCGTACAATAGAA
CGGCACCAGATATCAGGTACGAGATATACCTTACGACCTTTGTGTCTTTG
TCGTCACATGACGATAGTGTCGCCCATCGTATTACGGTGAGGACATATTG
TTAAATCATCAGATAATCTGATTGTCTTACTTGGCGTGTTGATATCGTCA
TACTGCAGTACCATCATATCATCATACCTGGTATAGTTGCATCATCTTAT
ATGCAGTCGTATCATATCGTATCATCGTATGTTATACTCATGGTAGTAAT
CAGATCATGTCGTCTACAAGTATGGTGCCAGGCATGATCAAAACAAGGTA
CCTGTTACCTGCGAAGTATGATATCTATGATCATGCCATGACATCATCGC
AGCATTGTATTATCTATCTTACACCATTATACCATTGTGCATCATCTTGA
GATCATCGTTGCACCATCGTGTAGCAACATTAACAAGAACAGCAGCTCCA
AGGAAATTGTCCACGGTACCATGGTTTGGTTGTATGATGCTGTGTGGTGC
AGGTGTTAGCCTTGTTCGCAGGCAAGGGAGAGGGCGAAGACGGCATAGGC
TTCGTGCGTTCCAAGTCGTGTACCGCCGACGCTGACCCAAAAGACCTGCA
GAACGTGGGGGTGGTGCTGGACGTTAGCAGCTTTTACGCCGAAGGTGGCG
GCCAGGTATACCGTAGCGCTCAGCAACGCCCAGTAGCAACATTCGGTAAC
GTTCTGTAACGTCCAGTGATATTCAGGAATACCCAGTATCATCCCGTATC
ACTCAGTAACATTGAGTAATGGCCAGTAGCGTCCACCAACGCCCAGTAAC
GCCCAGGAATTACAAATAAGATTCAGTACCAGGTATTCAGGAACCTCTCG
TAAGTCCCAGTAGCTTCCAGCATCGTCCGGTGAAAGTCAGTATTAATAGC
ATTAGTCAGTAGCATTCAGTAACGTCCAGGAATATCCAGTAACGTATACC
AGGTACCTGGTATTAATCAGCTCCCAGCGACATTCGGTAACTGTGATGTG
AAATAATTAAAATAATGCACGGTCCGATCCGATACGCCCAAGTGAAGATC
AAGATGAACATATCGAACACAAAGTGTTGGGCATGTTGAACATCCTGAAC
ATCCTGAACGTGTTGAACATATCGAACATACCAGGTACGGAACATTCTGA
ACGCATTGGGCGTAGGCATTAAAGACAATAAGTACATGGGACGTATTGAA
CATATCGAACATATGGAACATTCTGAAAGGATTGATCGTACTGAACATAT
TGAACATAGTGATAACATAGTGATCATATTGACCATATTGACATATTGAC
CGTATTGGAAATACTGGACATGCTGAACACATATAATATATCGATGTACC
GTGCCTTTCTTGTTGCCAGATCTTCGACACCGGGGAGCTGTCGTTCGAAG
ACGGATCTGGCTCGTTGTGCGTAAAGCAGGTCACCGCCTTTGGGGCGTAT
GTGCTCCATGTCGGACAGGCGAGACAACGAATCATCACATTCTCATCACG
GCTGTAGTGGACTACAAATAGAGTACACACAATACTACAATTGTATTTAG
GACCAGCTTAAATAGTAGCGCGCAAAACAGAGTGCACGCAATAGTGTAAT
TTAGTACCTAGTGCACAAAGTTGTTTCTACATTACTATCCGTAGTGTTCG
TTTGGTCGACAGTGTGATATATCGCATCATCCCGTGTATTATAACCTTTT
AATGTAACCACGTTATGTAGCCATGTATTGTAACCTTAAACTGAAACTAA
GCAATGTGATGCAACTATGTGATGTAATATAACCATCGCTTCACTGGCCG
GGTAGTCGGCCAATCAACCGTGCAAACTTGCCTTGGTTGCACCAGTTTAG
TATGTATGATAGCGTGATATGTACATTGATTGGTACTACTTCGTGTATTA
TTAACAGTTACATTAATAGTGTTGTGTATTACTTGGTGTCTTGTTTTTTG
TCTAATTTGGTGTCTGCCGCATTGCCGTGCGCCCTTGTACCCACGGTGGT
GCTGTCCGTTTCCAAGCACATGAAGCATCAACTGAGCTGATTACCAGACA
AGGAGCAGCATCAAGCTCGAGTTGCCTTAATGTCTGGTCTGGTCTGGTCT
GTCTGCGGTCCCTTTACATTTCAGCTACAATACTCGTACAGCTGCTGCTC
CTATCATACAGGTAGGCTAAACCGCTAGCTTATTGATGCCTTCGTAACTA
CCTTCGTAGCTACCGTTGTAACTACTTAGTACCTGGTAACTATTACTGGT
GTGTCAGGTATAATTCTAGGCCATTAATCCTTACGTCACCCCCTTCGCAC
CTGAATAAGACCGTACTGAAGTATTAGCATGACCTACTACTACTGTAGAT
CCAGTGGGAATCTGATCTGTCTGATCTGTCTGATGTGTCTGATCTACCTG
ATTTGTATGAAAGCTTCAAGATTTGTCACCGTGTGGTTGTGTGCTGTTGT
ACTGCAGGTGACGAGTGGCACTGTCGAGGTGGGGTCGACAGTTGTGTGCA
AGGTGGACTACGACAGACGTGCCAATGTGGCACCCAACCACACCATGACC
CACGTGCTCAACTTCGCCCTCCGGAAGGCACGTACCTGGTATATAACATA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1237:117..9317+

>mRNA_M-pyrifera_M_contig1237.4848.1 ID=mRNA_M-pyrifera_M_contig1237.4848.1|Name=mRNA_M-pyrifera_M_contig1237.4848.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig1237:117..9317+ (Macrocystis pyrifera P11B4 male)
CAGGGTCTGACTGTTGATGTGGAGGGATTCACTCGCAAAATGGCGGACGA
GAAAATGAAGAGCGGACTCGCACGGACCAATCAAAAGGCTGCAGGGGGGA
AGCCGATGGTCCTGGAAGCTGAAGAGCAGGGTCTGACTGTTGATGTGGAG
GGATTCACTCGCAAAATGGCGGACGAGAAAATGAAGAGCGGACTCGCACG
GACCAATCAAAAGGCTGCAGGGGGGAAGCCGATGGTCCTGGAAGCTGAAG
AGATGGACTGGCTTTCCAAGCGGGGCACCGCCGCGACGGCAACCGCTGGT
CGGTACACGTGGCATCATCAGCCCACCGCTAAGGCAAATGGACTGGCTTT
CCAAGCGGGGCACCGCCGCGACGGCAACCGCTGGTCGGTACACGTGGCAT
CATCAGCCCACCGCTAAGGCAACCTTGTTCGCAGGCAAGGGAGAGGGCGA
AGACGGCATAGGCTTCGTGCGTTCCAAGTCGTGTACCGCCGACGCTGACC
CAAAAGACCTGCAGAACGTGGGGGTGGTGCTGGACGTTAGCAGCTTTTAC
GCCGAAGGTGGCGGCCAGCCTTGTTCGCAGGCAAGGGAGAGGGCGAAGAC
GGCATAGGCTTCGTGCGTTCCAAGTCGTGTACCGCCGACGCTGACCCAAA
AGACCTGCAGAACGTGGGGGTGGTGCTGGACGTTAGCAGCTTTTACGCCG
AAGGTGGCGGCCAGATCTTCGACACCGGGGAGCTGTCGTTCGAAGACGGA
TCTGGCTCGTTGTGCGTAAAGCAGGTCACCGCCTTTGGGGCGTATGTGCT
CCATGTCGGACAGGCGAGACAACGAATCATCACATTCTCATCACGGCTAT
CTTCGACACCGGGGAGCTGTCGTTCGAAGACGGATCTGGCTCGTTGTGCG
TAAAGCAGGTCACCGCCTTTGGGGCGTATGTGCTCCATGTCGGACAGGCG
AGACAACGAATCATCACATTCTCATCACGGCTTGGCACTGTCGAGGTGGG
GTCGACAGTTGTGTGCAAGGTGGACTACGACAGACGTGCCAATGTGGCAC
CCAACCACACCATGACCCACGTGCTCAACTTCGCCCTCCGGAAGGCACGT
ACCTGGTATATAACATAATGGCACTGTCGAGGTGGGGTCGACAGTTGTGT
GCAAGGTGGACTACGACAGACGTGCCAATGTGGCACCCAACCACACCATG
ACCCACGTGCTCAACTTCGCCCTCCGGAAGGCACGTACCTGGTATATAAC
ATAA
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