mRNA_M-pyrifera_M_contig123661.4847.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123661.4847.1
Unique NamemRNA_M-pyrifera_M_contig123661.4847.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123661.4847.1 vs. uniprot
Match: A0A2E7KGW3_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KGW3_9PLAN)

HSP 1 Score: 299 bits (765), Expect = 8.910e-100
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 MNLLPALRGCCLFACLWSGMLLTSAQTAEPKTQTAPPVQQQWHTLVERMIQQRLQLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTVKQPLLRYEEKPEIQTSLSTWIRTPEMSIHTEGNRTSVRIYEPDAHPG 441
            MN+LPALRGCCLFACLWSGMLLTSAQTAEPKTQTAPPVQQQWHTLVERMIQQR+QLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTVKQPLLRYEEKPEIQTSLSTWIRTPEMSIHTEGNRTSVRIYEPDAHPG
Sbjct:    1 MNMLPALRGCCLFACLWSGMLLTSAQTAEPKTQTAPPVQQQWHTLVERMIQQRMQLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTVKQPLLRYEEKPEIQTSLSTWIRTPEMSIHTEGNRTSVRIYEPDAHPG 147
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BLAST of mRNA_M-pyrifera_M_contig123661.4847.1 vs. uniprot
Match: A0A518ICC9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518ICC9_9PLAN)

HSP 1 Score: 82.4 bits (202), Expect = 8.540e-16
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1 
Query:   46 LWSGMLLTSAQTAEPKTQTAPPVQQQWH------TLVERMIQQRLQLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTVKQPLLRYEEKPEIQT--SLSTWIRTPEMSIHTEGNRTSVRIYEPDAHP 438
            L SG+L  +A +  P  + A   Q Q        TL++ M QQR  L++G F+A   ++   T P    +   AEC+F+ +FQ+ RFDQ VKQ     ++K E +T  S S +++TPE SIHTEGN TSVRI EPD  P
Sbjct:   12 LISGLLFFTAVSPAPAQKPAESKQAQHEQKELLQTLLQGMQQQRSLLRSGEFKANAVVT-DSTTPLRVEL--KAECFFSQQFQQFRFDQDVKQVTPHPKKKGETRTLRSRSIYVKTPEYSIHTEGNNTSVRINEPDYKP 147
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BLAST of mRNA_M-pyrifera_M_contig123661.4847.1 vs. uniprot
Match: A0A517RFJ0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RFJ0_9PLAN)

HSP 1 Score: 72.4 bits (176), Expect = 3.520e-12
Identity = 54/137 (39.42%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:   46 LWSGMLLTSAQTAEPKTQ-TAPPVQQQW---HTLVERMIQQRLQLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTVKQPLLRYEEKPEIQT--SLSTWIRTPEMSIHTEGNRTSVRIYEPDAHP 438
            L SG+   SA  + P  + TA    +Q     +L++ M QQR  L++G F+A   ++   T      I   A+C+F+ +F+K RFDQ VKQ     ++K E +T  S S +++TPE SIHTEGN T VRI +PD  P
Sbjct:   12 LSSGLFFLSAIASAPAQKPTAKEKHEQKKVVQSLLQGMQQQRSLLKSGEFKADAVVTDFATP---LRIELKADCFFSQQFKKFRFDQDVKQITPHPKKKGEKRTLHSRSIYVKTPEYSIHTEGNNTGVRINDPDYKP 145
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123661.4847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7KGW3_9PLAN8.910e-10098.64Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A518ICC9_9PLAN8.540e-1641.73Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517RFJ0_9PLAN3.520e-1239.42Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123661contigM-pyrifera_M_contig123661:1..441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size441
Cds size441
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.2815883-CDS-M-pyrifera_M_contig123661:0..4411622815755.2815883-CDS-M-pyrifera_M_contig123661:0..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123661 1..441 -
1692277554.1856518-CDS-M-pyrifera_M_contig123661:0..4411692277554.1856518-CDS-M-pyrifera_M_contig123661:0..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123661 1..441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123661.4847.1prot_M-pyrifera_M_contig123661.4847.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123661 1..441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123661.4847.1

>prot_M-pyrifera_M_contig123661.4847.1 ID=prot_M-pyrifera_M_contig123661.4847.1|Name=mRNA_M-pyrifera_M_contig123661.4847.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
MNLLPALRGCCLFACLWSGMLLTSAQTAEPKTQTAPPVQQQWHTLVERMI
QQRLQLQAGHFQATTRISFPKTQPEEATILFDAECWFADRFQKVRFDQTV
KQPLLRYEEKPEIQTSLSTWIRTPEMSIHTEGNRTSVRIYEPDAHPG
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mRNA from alignment at M-pyrifera_M_contig123661:1..441-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123661.4847.1 ID=mRNA_M-pyrifera_M_contig123661.4847.1|Name=mRNA_M-pyrifera_M_contig123661.4847.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig123661:1..441- (Macrocystis pyrifera P11B4 male)
ATGAACCTGTTACCTGCACTCCGCGGCTGTTGTCTGTTCGCCTGCCTCTG
GTCTGGTATGCTGCTGACCTCAGCTCAGACCGCGGAGCCGAAAACGCAAA
CAGCGCCCCCTGTGCAACAACAGTGGCACACGCTGGTGGAACGCATGATT
CAACAACGCCTGCAGCTGCAAGCGGGGCATTTCCAGGCGACGACGCGCAT
TTCCTTTCCCAAAACGCAACCGGAAGAAGCCACAATTCTCTTTGACGCAG
AGTGCTGGTTTGCCGACCGGTTCCAGAAAGTCCGCTTTGATCAGACAGTC
AAACAGCCGCTGTTGCGATACGAAGAGAAACCGGAGATTCAAACCTCACT
ATCAACGTGGATCCGCACGCCGGAGATGAGCATTCACACAGAAGGGAATC
GAACCAGCGTACGCATTTATGAGCCGGACGCGCACCCGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123661:1..441-

>mRNA_M-pyrifera_M_contig123661.4847.1 ID=mRNA_M-pyrifera_M_contig123661.4847.1|Name=mRNA_M-pyrifera_M_contig123661.4847.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig123661:1..441- (Macrocystis pyrifera P11B4 male)
ATGAACCTGTTACCTGCACTCCGCGGCTGTTGTCTGTTCGCCTGCCTCTG
GTCTGGTATGCTGCTGACCTCAGCTCAGACCGCGGAGCCGAAAACGCAAA
CAGCGCCCCCTGTGCAACAACAGTGGCACACGCTGGTGGAACGCATGATT
CAACAACGCCTGCAGCTGCAAGCGGGGCATTTCCAGGCGACGACGCGCAT
TTCCTTTCCCAAAACGCAACCGGAAGAAGCCACAATTCTCTTTGACGCAG
AGTGCTGGTTTGCCGACCGGTTCCAGAAAGTCCGCTTTGATCAGACAGTC
AAACAGCCGCTGTTGCGATACGAAGAGAAACCGGAGATTCAAACCTCACT
ATCAACGTGGATCCGCACGCCGGAGATGAGCATTCACACAGAAGGGAATC
GAACCAGCGTACGCATTTATGAGCCGGACGCGCACCCGGGCATGAACCTG
TTACCTGCACTCCGCGGCTGTTGTCTGTTCGCCTGCCTCTGGTCTGGTAT
GCTGCTGACCTCAGCTCAGACCGCGGAGCCGAAAACGCAAACAGCGCCCC
CTGTGCAACAACAGTGGCACACGCTGGTGGAACGCATGATTCAACAACGC
CTGCAGCTGCAAGCGGGGCATTTCCAGGCGACGACGCGCATTTCCTTTCC
CAAAACGCAACCGGAAGAAGCCACAATTCTCTTTGACGCAGAGTGCTGGT
TTGCCGACCGGTTCCAGAAAGTCCGCTTTGATCAGACAGTCAAACAGCCG
CTGTTGCGATACGAAGAGAAACCGGAGATTCAAACCTCACTATCAACGTG
GATCCGCACGCCGGAGATGAGCATTCACACAGAAGGGAATCGAACCAGCG
TACGCATTTATGAGCCGGACGCGCACCCGGGC
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