mRNA_M-pyrifera_M_contig12366.4845.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12366.4845.1
Unique NamemRNA_M-pyrifera_M_contig12366.4845.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: D7FNH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNH0_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 1.110e-155
Identity = 219/235 (93.19%), Postives = 229/235 (97.45%), Query Frame = 1 
Query:    1 EIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFQAALDTPAGRRK 705
            EIEDLNVMHKFDRRLERLAMVMPLTD FDPGVTHFAHEHLQEGDK+S+PASILSELMRKQ+EIPWQFELKLVRR+ PGKFEPVDVP PPR ALTG+ EMPQLS+VACSILDARSPEQF+F+PDWMMKALRL+PRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAI+RGTTVAFRYRKTLYKFNVLECID DGKSQEAVCVQDSDVATDFQAALDTPAGRRK
Sbjct:   66 EIEDLNVMHKFDRRLERLAMVMPLTDQFDPGVTHFAHEHLQEGDKISMPASILSELMRKQAEIPWQFELKLVRRKGPGKFEPVDVPAPPRAALTGRAEMPQLSAVACSILDARSPEQFVFMPDWMMKALRLRPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAITRGTTVAFRYRKTLYKFNVLECIDADGKSQEAVCVQDSDVATDFQAALDTPAGRRK 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A835Z4C9_9STRA (Ubiquitin fusion degradation protein UFD1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C9_9STRA)

HSP 1 Score: 243 bits (619), Expect = 9.270e-75
Identity = 122/251 (48.61%), Postives = 171/251 (68.13%), Query Frame = 1 
Query:    1 EIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIV-LQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYR----------------------KTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFQAALD 684
            E+ED+NVM+K+DR+++RL +VMPLTD F+P V  F H HLQ  D+VSLP S+L E+  ++ E PWQFE++ V RR PG + PV++  P R+ L G+TEMPQLS V CS LDAR+PEQ+IFIPDWMMK+LRL+PRDIV  R+K+L +++  V LQ HS +    +   AV+E ELRHYS+++ GTT++F +                       +   K NV++C+D  G++ E+VC+QD+DV TD+   LD
Sbjct:  103 ELEDINVMNKYDRKMDRLLLVMPLTDSFEPAVGQFGHGHLQTSDRVSLPQSVLKEVQHRKLEFPWQFEIQRVHRRGPGDYLPVELSMPTRDDLAGRTEMPQLSRVTCSPLDARAPEQYIFIPDWMMKSLRLKPRDIVQLRYKNLPQSTGCVHLQAHSES---AATSHAVLEEELRHYSSLTAGTTISFVFNPQGAELGGAKGAKGKAKKGVGARREVKINVVQCVDAGGRAVESVCIQDADVGTDWLKPLD 350
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A7S2UZC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZC1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.360e-63
Identity = 115/255 (45.10%), Postives = 161/255 (63.14%), Query Frame = 1 
Query:    1 EIEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREA--------------------LTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFQAALDTPAGRRK 705
            E+ED N M K DR L+R  +VMPLT  FDP V + AH H+Q GDK+S+P S+   +M++  E PWQFE++++ R   G  E  D    P +                      T K + P L  + CS+LD R+PE +IF+P WMMK+L L+PRD+V  RH  L + +   LQPH S FLK++NH+AV+E+ELRHYS+++ G+T+AFRYRK  Y F+V+E + +DGK Q+A+CVQD +VA DF   LD    ++K
Sbjct:   57 EVEDFNSMKKLDRSLDRRYIVMPLTRAFDPPVGNIAHNHIQFGDKISMPKSLFKMIMKQHIEPPWQFEIEVINRV--GDCEEKD----PEDGDXXXXXXXXXXXXXXXXXXLSTSKLQWP-LKKLYCSLLDIRAPENYIFLPGWMMKSLGLRPRDVVRMRHFVLPQGTMAKLQPHHSDFLKLTNHRAVLESELRHYSSLTTGSTIAFRYRKKKYFFDVVEVM-SDGKIQDAICVQDCNVAADFVEPLDVVKKKKK 303
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A0G4FQT5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FQT5_VITBC)

HSP 1 Score: 184 bits (467), Expect = 4.090e-52
Identity = 98/254 (38.58%), Postives = 150/254 (59.06%), Query Frame = 1 
Query:    4 IEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPR---------------EALTGKTEMPQ--LSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFQAALDTPAGRRKGKT 714
            +ED+N++ K + R  R   VMP+++ F+P   HF+H+H+  GDKVS P +I ++L+ +  EIPWQF L+ + R+   K       T                  + + G+    +  L  V CS LD R+PE F+F+PDWMM AL L PRD++      L + + +  QPH+SAFLKMSNHQAV+E ELRHYS+++ G+T+  +Y +  +  +V+E + +  ++ + VCVQD DV+TDF A  D     + G+T
Sbjct:  101 VEDINILEKAEGRHGRFLTVMPISEKFNPPPGHFSHDHVMYGDKVSFPRTISTQLLERNLEIPWQFVLEKIDRKELEKVWGGTATTTTXXXXXXXXXXXXXXXGDRIGGRQRYYKSGLKRVYCSTLDFRAPENFVFVPDWMMAALNLMPRDLLYCEFVRLPEGTTVTFQPHNSAFLKMSNHQAVLERELRHYSSLTAGSTIVIKYNRRNFLIDVVE-VKSGSEAYDGVCVQDCDVSTDFIAPKDQDDTAQPGET 353
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A6V1UP89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UP89_HETAK)

HSP 1 Score: 181 bits (458), Expect = 2.530e-51
Identity = 104/264 (39.39%), Postives = 148/264 (56.06%), Query Frame = 1 
Query:    4 IEDLNVMHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVP------------------------------------TPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTDGKSQEAVCVQDSDVATDFQAALDT 687
            +ED N + K D  L R  ++MP+ + FDP    F+  H+Q GDK+S+P SI S + R+    PW FE++++   +P + + +                                       + P+    G  +  +L  V  SILD  +PE +IF PDWM+KALRL+PRD+V  R   L K   I L+PHSS FLK+SNHQAVMETEL+HYS ++ G TV  +YR T+Y+ +V E + +DGK   A+C++D+DVATDF   LDT
Sbjct:   38 VEDHNALSKLDNNLNRRCIIMPMNEGFDPPPGSFSRGHIQMGDKMSIPRSIFSHIQREDIGYPWLFEIEVLH--SPEEQDELKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSGPKRG--GARKKKELQRVYGSILDYAAPENYIFAPDWMLKALRLRPRDVVEVRLAALPKGGLIKLRPHSSDFLKLSNHQAVMETELKHYSCLTEGATVKIKYRDTVYELDVEELL-SDGKPVGALCIEDTDVATDFLPPLDT 296
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A7S3Q209_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q209_9STRA)

HSP 1 Score: 158 bits (400), Expect = 4.080e-43
Identity = 90/221 (40.72%), Postives = 128/221 (57.92%), Query Frame = 1 
Query:   49 RLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKA-SKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFQAALDTPAGRRK 705
            R  +V+PL D FDP V  F+H H Q GDK+SLP    S + +  +++PW FE+  V           D  T PR  L    E P+LS V    +D RSP+ ++F+P WMM+AL L+PRD+V  +      A S + L+PH+S F+ + NHQAV+ETEL+HYSA++RG+T+ F Y    Y F+V++   +  G+      VQD D+A +F  A D     RK
Sbjct:   88 RRLIVLPLDDRFDPPVGVFSHGHTQTGDKMSLPRVFWSAIQKTNADVPWLFEVSRV-----------DGVTGPRVILPPNMEDPKLSKVVGGAIDFRSPDNYVFLPRWMMQALALKPRDVVDVKLIQTVPAGSAVKLRPHASEFVNIGNHQAVLETELKHYSALTRGSTIPFDYLGKRYYFDVVDLRSSPRGEKVPMAKVQDCDIAAEFIRAKDQMKKNRK 297
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A7S2EXW9_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXW9_TRICV)

HSP 1 Score: 153 bits (386), Expect = 3.770e-41
Identity = 85/215 (39.53%), Postives = 125/215 (58.14%), Query Frame = 1 
Query:   49 RLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGK-TEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKD-LTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFQAALD 684
            R  +V+PL + FDP    F+H H+Q GDK+SLP +  + + + ++E+PW FE+  V           D  T PR  +  +  E P L  V    +D RSP  ++F+P WMM AL L+PRD+V  R  + +   S + L+PHSS F+K+ NHQAV+ETEL+HYSA+++G T+ F Y    Y F+V++      G+      VQD D+A +F  A D
Sbjct:   79 RRLIVLPLDERFDPPTGVFSHGHVQTGDKMSLPKNFWAAIAKTKAEVPWLFEVSRV-----------DGATGPRAVMPARGAEDPGLDKVVGGAIDFRSPSNYVFLPRWMMIALALKPRDVVDVRLVETVPPGSAVKLRPHSSEFVKIGNHQAVLETELKHYSALTKGATIPFDYNNKRYYFDVVDLRSAPRGEKVPMAKVQDCDIAAEFVRAKD 282
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: B7GA75_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA75_PHATC)

HSP 1 Score: 153 bits (387), Expect = 5.510e-41
Identity = 91/224 (40.62%), Postives = 132/224 (58.93%), Query Frame = 1 
Query:   49 RLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIV-LQPHSSAFLK-MSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFQAALDTPAGRRKGK 711
            R  + +PL+D FDP +  F+H+H+Q GDK+SLPA+    +    +E+PW F +K +      + E  D      + +T    + QL  V    LD R+P  +IF+P WMM+AL ++PRDIV     +   A  +  L+PHSS F K ++N QAV+ETELRHYS++++G+T+AF Y K  Y F+V+E      G+    V VQD D+ATDF  A D    RR+ K
Sbjct:   94 RRLICLPLSDRFDPPMGSFSHKHVQTGDKMSLPANFWQAIQLNHAEVPWLFSVKRIDGVTGERVEFSD-----DDIITPHKPLAQLDKVVGGPLDFRAPACYIFLPWWMMRALGVKPRDIVEVELFETVPAGSLAKLRPHSSDFGKEIANPQAVLETELRHYSSLTQGSTIAFDYNKKRYWFDVVELRSAPRGEKSSMVKVQDCDIATDFLIARDEIQNRRRRK 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A6U3VNR1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3VNR1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.360e-39
Identity = 88/224 (39.29%), Postives = 126/224 (56.25%), Query Frame = 1 
Query:   49 RLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEP-VDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRH-KDLTKASKIVLQPHSSAFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFQAALDTPAGRRKGK 711
            R A+ +PL D FDP V  F+H H+  GDK+SLP +    +M+ ++E+PW FE+     R  G   P V +P       +  T    LS      LD RSP  ++F+P WM KAL L+PRD+V  R  K     S + L+PH+SAF  + NHQAV+ETEL+HYSA++ G+T+ F YR   + F+V++      G+      VQD D+A +F    D    +R+ K
Sbjct:   97 RRAIALPLDDRFDPPVGVFSHGHIYTGDKMSLPRNFWDAIMKSKAEVPWLFEVS----RVDGVSSPRVTMPADEHHHKSSAT----LSRAVGGALDFRSPNNYVFLPPWMFKALGLRPRDVVDVRLVKTTPPGSAVKLRPHTSAFTNIGNHQAVLETELKHYSALTLGSTIPFDYRGERFYFDVVDLRSAPRGERVPMAKVQDCDIAAEFVRPKDQMKPKRRQK 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Match: A0A0P0YV10_9STRA (Symbiotic ubiquitin fusion degradation n=1 Tax=Nitzschia sp. IriIs04 TaxID=1444690 RepID=A0A0P0YV10_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.360e-39
Identity = 87/217 (40.09%), Postives = 128/217 (58.99%), Query Frame = 1 
Query:   46 ERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELMRKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVACSILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIV-LQPHSSAFLK-MSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTD-GKSQEAVCVQDSDVATDFQAALDT 687
            +R  + +PL D FDP +  F+H H+Q GDK+SLP      +   ++E+PW F ++ V +      E  +V +   E + G  +   LS V    LD R+P  ++F+P WMM+AL LQPRD+V         A  +  L+PHSS++ K +SN QAV+ETELRHYS++++G+T+AF Y    Y F+V +      G+   A+ VQD D+ATDF  A DT
Sbjct:   86 KRRLICLPLDDRFDPPMGVFSHGHVQTGDKMSLPRVFFQAIQANKAEVPWLFTVRRVEKSTGEGDE--EVVSSYNERVVGPEQAGSLSQVIGGPLDFRAPPNYVFLPHWMMRALGLQPRDVVDVEITFSVPAGSLARLRPHSSSWSKEISNPQAVLETELRHYSSLTKGSTIAFDYNSKRYWFDVEDLRSAPRGERCSAIRVQDCDIATDFLPAKDT 300
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12366.4845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNH0_ECTSI1.110e-15593.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4C9_9STRA9.270e-7548.61Ubiquitin fusion degradation protein UFD1-domain-c... [more]
A0A7S2UZC1_9STRA1.360e-6345.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0G4FQT5_VITBC4.090e-5238.58Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A6V1UP89_HETAK2.530e-5139.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Q209_9STRA4.080e-4340.72Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S2EXW9_TRICV3.770e-4139.53Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
B7GA75_PHATC5.510e-4140.63Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U3VNR1_9STRA1.360e-3939.29Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A0P0YV10_9STRA1.360e-3940.09Symbiotic ubiquitin fusion degradation n=1 Tax=Nit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12366contigM-pyrifera_M_contig12366:184..4917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score435.3
Seed ortholog evalue2.2e-119
Seed eggNOG ortholog2880.D7FNH0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1816@2759
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-01_005490.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size870
Cds size849
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.1044252-UTR-M-pyrifera_M_contig12366:183..2041622815755.1044252-UTR-M-pyrifera_M_contig12366:183..204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12366 184..204 +
1692277554.0687246-UTR-M-pyrifera_M_contig12366:183..2041692277554.0687246-UTR-M-pyrifera_M_contig12366:183..204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12366 184..204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.1169934-CDS-M-pyrifera_M_contig12366:204..3061622815755.1169934-CDS-M-pyrifera_M_contig12366:204..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 205..306 +
1692277554.0789123-CDS-M-pyrifera_M_contig12366:204..3061692277554.0789123-CDS-M-pyrifera_M_contig12366:204..306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 205..306 +
1622815755.1276624-CDS-M-pyrifera_M_contig12366:1261..14111622815755.1276624-CDS-M-pyrifera_M_contig12366:1261..1411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 1262..1411 +
1692277554.0873399-CDS-M-pyrifera_M_contig12366:1261..14111692277554.0873399-CDS-M-pyrifera_M_contig12366:1261..1411Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 1262..1411 +
1622815755.1417885-CDS-M-pyrifera_M_contig12366:1905..20331622815755.1417885-CDS-M-pyrifera_M_contig12366:1905..2033Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 1906..2033 +
1692277554.0962577-CDS-M-pyrifera_M_contig12366:1905..20331692277554.0962577-CDS-M-pyrifera_M_contig12366:1905..2033Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 1906..2033 +
1622815755.1543643-CDS-M-pyrifera_M_contig12366:2532..26751622815755.1543643-CDS-M-pyrifera_M_contig12366:2532..2675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 2533..2675 +
1692277554.1056652-CDS-M-pyrifera_M_contig12366:2532..26751692277554.1056652-CDS-M-pyrifera_M_contig12366:2532..2675Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 2533..2675 +
1622815755.167102-CDS-M-pyrifera_M_contig12366:4084..41851622815755.167102-CDS-M-pyrifera_M_contig12366:4084..4185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 4085..4185 +
1692277554.1154144-CDS-M-pyrifera_M_contig12366:4084..41851692277554.1154144-CDS-M-pyrifera_M_contig12366:4084..4185Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 4085..4185 +
1622815755.1827097-CDS-M-pyrifera_M_contig12366:4692..49171622815755.1827097-CDS-M-pyrifera_M_contig12366:4692..4917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 4693..4917 +
1692277554.1282983-CDS-M-pyrifera_M_contig12366:4692..49171692277554.1282983-CDS-M-pyrifera_M_contig12366:4692..4917Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12366 4693..4917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12366.4845.1prot_M-pyrifera_M_contig12366.4845.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12366 205..4917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12366.4845.1

>prot_M-pyrifera_M_contig12366.4845.1 ID=prot_M-pyrifera_M_contig12366.4845.1|Name=mRNA_M-pyrifera_M_contig12366.4845.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp
MHKFDRRLERLAMVMPLTDHFDPGVTHFAHEHLQEGDKVSLPASILSELM
RKQSEIPWQFELKLVRRRAPGKFEPVDVPTPPREALTGKTEMPQLSSVAC
SILDARSPEQFIFIPDWMMKALRLQPRDIVLYRHKDLTKASKIVLQPHSS
AFLKMSNHQAVMETELRHYSAISRGTTVAFRYRKTLYKFNVLECIDTDGK
SQEAVCVQDSDVATDFQAALDTPAGRRKGKTPSQLKAEAARRVDAEGGED
GGGSRDDGGGAGGDGSGSESDDGEGGWGSDEF*
back to top

mRNA from alignment at M-pyrifera_M_contig12366:184..4917+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12366.4845.1 ID=mRNA_M-pyrifera_M_contig12366.4845.1|Name=mRNA_M-pyrifera_M_contig12366.4845.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4734bp|location=Sequence derived from alignment at M-pyrifera_M_contig12366:184..4917+ (Macrocystis pyrifera P11B4 male)
GAGATCGAGGACTTGAACGTGATGCACAAGTTCGACCGACGGTTAGAGCG
GCTGGCGATGGTGATGCCGCTCACCGACCATTTCGACCCTGGGGTGACAC
ACTTCGCGCACGAGCACCTCCAGGTTTGCGCGCTACATGCGGATATCTGC
TACCGTGTCTAGTTACGTACCGTGTCTAGTTATGTAATGTTTGTGGCTAC
TATTTATGGCTACTACTTATGGTTGTCATAATCACAAATAGCGCTATGGT
TGCCGTCCTTGGATATTCCTCCCACGAGTACAGTACGGTCTAATGCTATG
GAAGCATATTTTAAGTGTTGCTGCATCAGTAGACTTCGTAGAACCTATTA
ATTTCCGCCCATGTGTGTGTTGCATATTTATTGGCTCGCCGTCAGGGCTG
GGAACGCGTTCACGGGACCGAGCCGATGTTGACGCCATTTTCTCGACGTC
CTTGACCCTAACTAGCTTCCTGTCCTGGCGTTCGTTTCGTATCAGAAGCC
ATCATCCGTGCCTGTGGCTTTTGAGCACCCTCTGATTTTTCAGGCCTCGA
TTGGAAAGTGCGATCGTTGAACGAATACCCCGGACTCACTCTCCCACCCA
TCCGCACCCGAGCAAAGGTGTTGAGGGCGCCTCTCCGACAAACGCGTCTG
CAGCGGTCGGTATACACAGCACGATATCGTGTGCCTCGGAGGTGGAAACT
ATTTATTCCACACCACAGTACCTCGGAGCCATTCTTTTATTAATATTACC
CAACCCAATTCTTCCACTCCAGCTCTTTTTAGCCTGTCCTATGACCACGG
ACTCAATATTTTGTGGACATGAGGTAATGTGAGAACAACAACAAAAACCA
TCTACAATTTGTATCTGTATATAATGTACCCAAGAGTGTCCCAAAATATG
CCGGACACGTAGATGCATATCGTATGGCCATGATGGGCTAAGCGAAAGCC
AGCGCCGCCACCGCCTGTCGAGATAAGATAGCTCTAACCGAATGCCCTAG
CTGGGTGCATGCTGCCCGCCTTGTGCACGCGCTTGAACTTGCGGTCCGTG
TGCGAACCCTCTCGTTACTCCGGCGCAGGAAGGGGATAAGGTGTCGCTGC
CGGCGTCTATTCTGTCGGAGCTGATGCGCAAGCAGTCGGAAATTCCGTGG
CAGTTCGAGCTCAAGCTTGTGCGAAGAAGGGCGCCGGGAAAGTTCGAGCC
GGTGGACGTGCCGACGCCTCCCAGAGAGGTATGTAGTCAGTTTTGTCGGG
GGACAGGAGGGGGGGATCCATGCTTAGCGCTACCGTTGCATGCGTGTCCT
GCAACGTTGTTATTCGGGAATGGGTGGGTGAAGGTGTTGTAGAGGAGGTG
TTCAAGTTGTAGGTGACGACGGTGCAACTAGATTCAGGAAAAGAAATATC
GAGATGGGTAGGCTCGTCAAGAGAGAGAACGCGGACGTTCAGGTCTGATT
TGATTGCTGGTGGCGATACAAGAACAATCGTGACGAGGGAGAAGCGGTTG
GGTCAACTATAACCTTTTTGTCTGAAAGTCGAGGCCTTCCTCTGCGCATC
ATGCGCTCGTTCGCTCGCTCACCCCTCTACAACCCGCCGACCCGTGACCC
CAGCATATTTTTTTTTCGCAAATTCCGGTCCTAATAACGCAATTATTTTG
CATGCTGGTGACACCGAGTTTTCAGGCCTTTGGTTTGTCTGCTCGTTTCG
CGAACTTGCCTTGCCACGACAGGCGTTGACGGGCAAGACGGAGATGCCGC
AGCTGTCAAGCGTCGCGTGCAGCATACTGGACGCCCGCTCCCCCGAGCAG
TTCATTTTTATCCCAGACTGGATGATGAAGGCGTTACGCCTGCAGCCCAG
GTTTGTAAAACAGCACCCCATGTGCAGCAGCATCATGCGGCGAATCATTC
GGCGATTCCAGTATTTATTGGCTACACGTAGCGGCCGATTCTGGAGCCAA
CGGGTGTTGACGTGGCGATACAAGAGGGTGCGCCGCGGTAGAGTCTTTGG
AGAAATATTGGATCGCATTGTGGGCAATATTTGCGGTGGTGGGCGTTCAA
ACACTAAAGCTCTCGTGCATATGATAGAATAACCGCGACAGGACGATTAT
TTTGTTGTTTCTGATTTTCCGTGTGCTGGGAACTAGGATGTTCAAAAGGC
GATGGTATGCGACGGATAAATGGTACCTGGTAGCTCCCCAACAGCCGCTT
TTAATATGGGGTGTGAGTAAAGACACTGTAGTACAGCGTCGACGGGGTGC
CGGATAGAGGGCACGAACCGTTTTCCTTCTTCTCCGCTTACATCGGTCCT
CGCATGTACTGCTGTTTGGTGTGCCCGTCCCCCGGCTCGGCTTTGTCAGG
GACATTGTCCTGTACCGGCATAAGGATCTGACCAAGGCCAGCAAAATCGT
CCTGCAGCCGCACTCCAGCGCTTTCCTGAAGATGTCGAACCACCAGGCCG
TCATGGAGACGGAGCTGCGTCATTACTCGGCAATATCACGCGGTGAGAGG
TCGACGCCTCGTGTCGGTTCGAAGTATCTACTTTAGATCTCGTAATATGC
ATGTCGGGCTGCTCAACCCTTTTGGCTCTTGAGCGGGAAAAAATGACGAG
AAAAAAAATGCTACTAGTAATTGCAGGGGCCATCGACCACTGCCTGGTCG
GGGGGATGATGGCTTCGGTGTCCGAAACTGCAATGCAAGGAGCAGCATGA
CACGGGCGCAGCCTGATCCTACCTGGACTGCTGCGCGCTCACTCTCGTAC
TCGAAGTCGGTTGAGAGTACCAACGTATCATTGTTTTGGCGGCTTTCATA
GGGTCCCAAGCGGATTAAGCCAGTTCCTCACACCAGTAGTATGGTTTGTC
GAGGTTCCGCGCAAAAGCACAAGAGCTCGGGTTGGAGTGCTTGTTCGCGA
CCGTGGATATTTTCCCGTTCGGTTGCTATCTTGCTATTTGTATCCTGCTG
CACATCAAGGGATCATGTTCGCTATCATGTACCTGGTACCGGTTTATCAT
ATATCAGATTTGTTTTCGGAATTTCGGAAGTTTATTGAGTATTCAGAATT
TTATCCGGTTACAGCAGCTCATCTCGGTACCTGGTATTTGCTATTTGTGA
CCCCTTGAACACGGAAGGATCCGTCGAACTTTTATTCGTCAGGAAGGAAA
CCCTTTGAGCGTTTTTGTCGGTACTGTGCTGCTGGTGGTGCGTGTAAGAG
TATCGTTGTTGCTGTAGGGCCAAGTAAGTGTTGGGGTTCCCCGTAGACTA
CAGGTATTTCTAGCGCCCAGCGTCAGGTCACAGCTTTTTTCGGACGTGAA
TGCATGGGAGGGGTTCAGAGGTTGCTGCTGTGTCGCGTCGCCTCCTTAGG
GTGTCGCCACTCGCGATTTATGCCCTTGGCGTAGATACGTGTTGTACCTC
GCCCCCTTCCGTGCTGGGTTGCCGTTCCCGCGTTTCTGAAATGTCAATTT
GTTAAACATGCGTGCGAGTAAGCGTCTCCCGCCGATATCTAGTCGAAAGC
CCGCAATAAAAAAAATCCGTACGTACCAGATATTTGTTAGTTCTGGTATA
TATTGGCTGTAATGCCGCGCCAATGAATCACATTGGCACGCTATTCCCCG
GTGTCCTGTTTTTTTTTTTTTCAGGCTAGACGGTCGTATATACGGGTTCC
CATGCTTTCAGCCACAAGCAGACGCAGGCCATGCCTAAGGTGTGATTTCA
TGGGACAGACGGACAAATAAAATAAAATAAAAAATCCGTTTCAACGACCC
CAGTTGACACGGGGGAACGTATACCTGGTAACAGATACAGCCAGTAGCAC
CGCAACGTAGCAAGCAACTCCCCGACTGCACGTACGTCCTTCTTGGTAGC
GTTGCGAGCACACACACAGCTGACAAAACCCACACCCGCGCCGGCTTACA
GGCACGACGGTCGCCTTCCGGTACCGGAAGACGCTGTACAAGTTCAACGT
GCTGGAGTGCATCGACACCGATGGGAAGTCGCAAGAGGCTGTTTGCGTCC
AGGTGATGGATGGGATCGCGCTCGAGAGAGCGTGTCAAGCCTCCTCACGC
AAAGTTACATGCTCCCATTTATCTCCTGGCGTACGTGGGCTGGCGCATTG
TGTTTTTCTTCGTTTCCCCCCGTCAATCCCCCCTCCATTTTTCGTTCGTT
GCCATAGTGTGTGAGCCCTCAAGACGCGGTAAGGCTCTTGAATGCGACCG
TTGACTCCAGAGCCGAGCTGAACAAAAATGTACCATCGACGCCGTGTGAA
TGTCCCCACTTGGGACTGTTATTTCTCGTGGGGGCATCTACAGTAGCTGC
TGTGGCTTGAGAGACGCAGCCCAGGCAAGTAAGATGCGTGCCGATCTCGC
GCAGTGACTTATTTTTCCCCGTCCGCAGCTGGTGTTGCCGCAGATGATGA
CGATGCTGCTTTTGTTTAGTCTGTTCTGTGACTCCCCCCATCTCAATTCA
TCGTGGATCCTAATCGTTCCACGTTGCGCCTCTTAATCATTCCACTTCGC
GCTTCTTAGGATTCCGACGTAGCGACAGACTTCCAGGCGGCGCTCGACAC
CCCCGCCGGAAGACGAAAGGGGAAGACGCCGTCGCAGCTAAAGGCGGAGG
CGGCCCGGAGGGTCGACGCGGAAGGAGGAGAAGATGGAGGCGGTAGTCGT
GATGATGGTGGCGGGGCGGGAGGTGACGGGAGCGGAAGCGAGAGCGATGA
CGGCGAGGGGGGCTGGGGTAGCGATGAGTTTTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig12366:184..4917+

>mRNA_M-pyrifera_M_contig12366.4845.1 ID=mRNA_M-pyrifera_M_contig12366.4845.1|Name=mRNA_M-pyrifera_M_contig12366.4845.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig12366:184..4917+ (Macrocystis pyrifera P11B4 male)
ATGCACAAGTTCGACCGACGGTTAGAGCGGCTGGCGATGGTGATGCCGCT
CACCGACCATTTCGACCCTGGGGTGACACACTTCGCGCACGAGCACCTCC
AGATGCACAAGTTCGACCGACGGTTAGAGCGGCTGGCGATGGTGATGCCG
CTCACCGACCATTTCGACCCTGGGGTGACACACTTCGCGCACGAGCACCT
CCAGGAAGGGGATAAGGTGTCGCTGCCGGCGTCTATTCTGTCGGAGCTGA
TGCGCAAGCAGTCGGAAATTCCGTGGCAGTTCGAGCTCAAGCTTGTGCGA
AGAAGGGCGCCGGGAAAGTTCGAGCCGGTGGACGTGCCGACGCCTCCCAG
AGAGGAAGGGGATAAGGTGTCGCTGCCGGCGTCTATTCTGTCGGAGCTGA
TGCGCAAGCAGTCGGAAATTCCGTGGCAGTTCGAGCTCAAGCTTGTGCGA
AGAAGGGCGCCGGGAAAGTTCGAGCCGGTGGACGTGCCGACGCCTCCCAG
AGAGGCGTTGACGGGCAAGACGGAGATGCCGCAGCTGTCAAGCGTCGCGT
GCAGCATACTGGACGCCCGCTCCCCCGAGCAGTTCATTTTTATCCCAGAC
TGGATGATGAAGGCGTTACGCCTGCAGCCCAGGCGTTGACGGGCAAGACG
GAGATGCCGCAGCTGTCAAGCGTCGCGTGCAGCATACTGGACGCCCGCTC
CCCCGAGCAGTTCATTTTTATCCCAGACTGGATGATGAAGGCGTTACGCC
TGCAGCCCAGGGACATTGTCCTGTACCGGCATAAGGATCTGACCAAGGCC
AGCAAAATCGTCCTGCAGCCGCACTCCAGCGCTTTCCTGAAGATGTCGAA
CCACCAGGCCGTCATGGAGACGGAGCTGCGTCATTACTCGGCAATATCAC
GCGGGACATTGTCCTGTACCGGCATAAGGATCTGACCAAGGCCAGCAAAA
TCGTCCTGCAGCCGCACTCCAGCGCTTTCCTGAAGATGTCGAACCACCAG
GCCGTCATGGAGACGGAGCTGCGTCATTACTCGGCAATATCACGCGGCAC
GACGGTCGCCTTCCGGTACCGGAAGACGCTGTACAAGTTCAACGTGCTGG
AGTGCATCGACACCGATGGGAAGTCGCAAGAGGCTGTTTGCGTCCAGGCA
CGACGGTCGCCTTCCGGTACCGGAAGACGCTGTACAAGTTCAACGTGCTG
GAGTGCATCGACACCGATGGGAAGTCGCAAGAGGCTGTTTGCGTCCAGGA
TTCCGACGTAGCGACAGACTTCCAGGCGGCGCTCGACACCCCCGCCGGAA
GACGAAAGGGGAAGACGCCGTCGCAGCTAAAGGCGGAGGCGGCCCGGAGG
GTCGACGCGGAAGGAGGAGAAGATGGAGGCGGTAGTCGTGATGATGGTGG
CGGGGCGGGAGGTGACGGGAGCGGAAGCGAGAGCGATGACGGCGAGGGGG
GCTGGGGTAGCGATGAGTTTTGAGATTCCGACGTAGCGACAGACTTCCAG
GCGGCGCTCGACACCCCCGCCGGAAGACGAAAGGGGAAGACGCCGTCGCA
GCTAAAGGCGGAGGCGGCCCGGAGGGTCGACGCGGAAGGAGGAGAAGATG
GAGGCGGTAGTCGTGATGATGGTGGCGGGGCGGGAGGTGACGGGAGCGGA
AGCGAGAGCGATGACGGCGAGGGGGGCTGGGGTAGCGATGAGTTTTGA
back to top