mRNA_M-pyrifera_M_contig123644.4843.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123644.4843.1
Unique NamemRNA_M-pyrifera_M_contig123644.4843.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A8JAX1_CHLRE (Superoxide dismutase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A8JAX1_CHLRE)

HSP 1 Score: 159 bits (401), Expect = 3.800e-47
Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            L +F TT SA+TAAVQGSGWGWLGY+KA  ++ + T+PNQDPLSVTGLVPLLGIDVWEHAYYLQY+NVRPDYLKAIWN+VN+ +VE+RL  AK
Sbjct:  130 LDNFTTTFSAQTAAVQGSGWGWLGYNKATHKLEVVTLPNQDPLSVTGLVPLLGIDVWEHAYYLQYKNVRPDYLKAIWNIVNWQNVEQRLAAAK 222
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A7S1CHM0_9STRA (Superoxide dismutase (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHM0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.170e-47
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAKA 285
             +SFK T +A+TAAVQGSGWGWLGY+KA D V    MPNQDPLS+TGLVPLLGIDVWEHAYYLQY+NVRPDYL AIW VVNFGDV  +L +AKA
Sbjct:  153 FESFKKTFNAQTAAVQGSGWGWLGYNKAADRVEFRAMPNQDPLSMTGLVPLLGIDVWEHAYYLQYKNVRPDYLNAIWGVVNFGDVAAKLAKAKA 246
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: D8UHE3_VOLCA (Superoxide dismutase n=5 Tax=Volvocaceae TaxID=3065 RepID=D8UHE3_VOLCA)

HSP 1 Score: 153 bits (386), Expect = 7.100e-45
Identity = 70/93 (75.27%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            L SF +T +A+TAAVQGSGWGWLGY+K    + I TMPNQDPLSVTGLVPLLG+DVWEHAYYLQY+NVRPDYLKAIWNVVN+ +V  RL  AK
Sbjct:  130 LDSFISTFNAQTAAVQGSGWGWLGYNKGTGRLEITTMPNQDPLSVTGLVPLLGVDVWEHAYYLQYKNVRPDYLKAIWNVVNWKNVADRLAAAK 222
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A250XHE6_9CHLO (Superoxide dismutase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XHE6_9CHLO)

HSP 1 Score: 153 bits (386), Expect = 7.100e-45
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            + +FKTT SA +A VQGSGWGWLGY+K  D + I T+PNQDPLS TGLVPLLG+DVWEHAYYL Y+NVRPDYLKAIWNVVN+ ++E RL  AK
Sbjct:  130 IDNFKTTFSAASAGVQGSGWGWLGYNKGADRLEIVTLPNQDPLSTTGLVPLLGVDVWEHAYYLDYKNVRPDYLKAIWNVVNWKNIEDRLAAAK 222
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A8J6CBY3_DIALT (Superoxide dismutase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CBY3_DIALT)

HSP 1 Score: 150 bits (379), Expect = 6.300e-44
Identity = 66/93 (70.97%), Postives = 80/93 (86.02%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            L +FKT+ +A+TAA+QGSGWGWLGYD A   + +AT  NQDPLS+ GLVPLLGIDVWEHAYYLQY+NVRPDYLKA+W+VVN+ +VE+RL  AK
Sbjct:  120 LDAFKTSFNAQTAAIQGSGWGWLGYDAASSSLKVATCANQDPLSMCGLVPLLGIDVWEHAYYLQYKNVRPDYLKAVWSVVNWKNVEERLAHAK 212
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A835XK75_9CHLO (Superoxide dismutase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XK75_9CHLO)

HSP 1 Score: 150 bits (379), Expect = 7.920e-44
Identity = 69/93 (74.19%), Postives = 81/93 (87.10%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            L +F++  SA+TAAVQGSGWGWLGY+KA  ++ I T+ NQDPLSVTGLVPLLGIDVWEHAYYLQY+NVRPDYLKAIWNVVN+ +V +RL  AK
Sbjct:  129 LDNFQSVFSAQTAAVQGSGWGWLGYNKASGKLEIQTLSNQDPLSVTGLVPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVVNWKNVGERLEAAK 221
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A8K1CEG2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG2_PYTOL)

HSP 1 Score: 150 bits (379), Expect = 9.380e-44
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
             ++FK T S KTAAVQGSGWGWLGY K +  V I T+PNQDPLS TGLVPLLG+DVWEHAYYLQY+NVRPDYL AIW+VVN+ +VE+R + AK
Sbjct:  135 FENFKKTFSTKTAAVQGSGWGWLGYSKEQKRVSIVTLPNQDPLSTTGLVPLLGVDVWEHAYYLQYKNVRPDYLNAIWDVVNWKNVEERYLVAK 227
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A250WW02_9CHLO (Superoxide dismutase n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW02_9CHLO)

HSP 1 Score: 148 bits (374), Expect = 4.780e-43
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
            L++FK   SA +A VQGSGWGWLGY+K  D + + T+PNQDPLS  GLVPLLG+DVWEHAYYL Y+NVRPDYLKAIWNVVN+ +VE+RL  AK
Sbjct:  131 LENFKVAFSAASAGVQGSGWGWLGYNKNMDSLEVVTLPNQDPLSTMGLVPLLGVDVWEHAYYLDYKNVRPDYLKAIWNVVNWKNVEERLTAAK 223
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BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: K3WFH7_GLOUD (Superoxide dismutase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFH7_GLOUD)

HSP 1 Score: 147 bits (372), Expect = 9.870e-43
Identity = 66/93 (70.97%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
             ++FK T SAKTAAVQGSGWGWLGY      V IAT+ NQDPLS TGL+PLLG+DVWEHAYYLQY+NVRPDYL AIW VVN+ +VE+R + AK
Sbjct:  132 FEAFKKTFSAKTAAVQGSGWGWLGYSTENKRVQIATLANQDPLSTTGLIPLLGVDVWEHAYYLQYKNVRPDYLSAIWKVVNWKNVEERFLAAK 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Match: A0A5D6YAD5_9STRA (Superoxide dismutase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAD5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.120e-42
Identity = 66/93 (70.97%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    4 LQSFKTTMSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVWEHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAK 282
             ++FK T SAKTAAVQGSGWGWLGY      V IAT+ NQDPLS  GLVPLLG+DVWEHAYYLQY+NVRPDYL AIW VVN+ +VE+R + AK
Sbjct:  135 FEAFKKTFSAKTAAVQGSGWGWLGYSPETKRVQIATLANQDPLSTVGLVPLLGVDVWEHAYYLQYKNVRPDYLNAIWKVVNWKNVEERFLAAK 227
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123644.4843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A8JAX1_CHLRE3.800e-4776.34Superoxide dismutase n=3 Tax=Chlamydomonas TaxID=3... [more]
A0A7S1CHM0_9STRA5.170e-4776.60Superoxide dismutase (Fragment) n=1 Tax=Bicosoecid... [more]
D8UHE3_VOLCA7.100e-4575.27Superoxide dismutase n=5 Tax=Volvocaceae TaxID=306... [more]
A0A250XHE6_9CHLO7.100e-4572.04Superoxide dismutase n=1 Tax=Chlamydomonas eustigm... [more]
A0A8J6CBY3_DIALT6.300e-4470.97Superoxide dismutase n=2 Tax=Diacronema lutheri Ta... [more]
A0A835XK75_9CHLO7.920e-4474.19Superoxide dismutase n=1 Tax=Edaphochlamys debarya... [more]
A0A8K1CEG2_PYTOL9.380e-4472.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A250WW02_9CHLO4.780e-4369.89Superoxide dismutase n=1 Tax=Chlamydomonas eustigm... [more]
K3WFH7_GLOUD9.870e-4370.97Superoxide dismutase n=1 Tax=Globisporangium ultim... [more]
A0A5D6YAD5_9STRA6.120e-4270.97Superoxide dismutase n=1 Tax=Pythium brassicum Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123644contigM-pyrifera_M_contig123644:184..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score151.4
Seed ortholog evalue2e-34
Seed eggNOG ortholog3055.EDO98932
Preferred nameMSD
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000302,GO:0000303,GO:0000305,GO:0001101,GO:0003006,GO:0003674,GO:0003824,GO:0004784,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006801,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0007275,GO:0008150,GO:0008152,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009838,GO:0009908,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010154,GO:0010227,GO:0016043,GO:0016209,GO:0016491,GO:0016721,GO:0019430,GO:0022414,GO:0022607,GO:0030145,GO:0031974,GO:0032501,GO:0032502,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0042221,GO:0042742,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048316,GO:0048367,GO:0048437,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051707,GO:0051716,GO:0055114,GO:0061458,GO:0065003,GO:0070013,GO:0070887,GO:0071450,GO:0071451,GO:0071840,GO:0072593,GO:0090567,GO:0097237,GO:0097305,GO:0098542,GO:0098754,GO:0098869,GO:0099402,GO:1901700,GO:1901701,GO:1990748
EggNOG free text desc.Destroys radicals which are normally produced within the cells and which are toxic to biological systems
EggNOG OGs34HM7@3041,37MWT@33090,COG0605@1,KOG0876@2759
EC1.15.1.1
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size291
Cds size267
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.0177333-CDS-M-pyrifera_M_contig123644:183..4501622815755.0177333-CDS-M-pyrifera_M_contig123644:183..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123644 184..450 -
1692277554.003125-CDS-M-pyrifera_M_contig123644:183..4501692277554.003125-CDS-M-pyrifera_M_contig123644:183..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123644 184..450 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815755.029893-UTR-M-pyrifera_M_contig123644:450..4741622815755.029893-UTR-M-pyrifera_M_contig123644:450..474Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123644 451..474 -
1692277554.0202127-UTR-M-pyrifera_M_contig123644:450..4741692277554.0202127-UTR-M-pyrifera_M_contig123644:450..474Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123644 451..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123644.4843.1prot_M-pyrifera_M_contig123644.4843.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123644 184..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123644.4843.1

>prot_M-pyrifera_M_contig123644.4843.1 ID=prot_M-pyrifera_M_contig123644.4843.1|Name=mRNA_M-pyrifera_M_contig123644.4843.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=89bp
MSAKTAAVQGSGWGWLGYDKAKDEVVIATMPNQDPLSVTGLVPLLGIDVW
EHAYYLQYRNVRPDYLKAIWNVVNFGDVEKRLVQAKAQ*
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mRNA from alignment at M-pyrifera_M_contig123644:184..474-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123644.4843.1 ID=mRNA_M-pyrifera_M_contig123644.4843.1|Name=mRNA_M-pyrifera_M_contig123644.4843.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig123644:184..474- (Macrocystis pyrifera P11B4 male)
GCGCTGCAGAGTTTCAAGACTACGATGAGCGCGAAGACAGCAGCGGTGCA
GGGGTCTGGTTGGGGTTGGTTGGGGTACGACAAGGCGAAGGACGAGGTGG
TGATCGCGACGATGCCGAACCAAGACCCGCTGAGCGTGACTGGGCTGGTG
CCTCTGCTTGGGATCGACGTGTGGGAGCACGCCTACTACCTGCAGTACCG
CAACGTGCGCCCAGACTACCTCAAGGCCATCTGGAACGTCGTCAACTTCG
GCGACGTGGAGAAGAGACTCGTCCAAGCGAAAGCACAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123644:184..474-

>mRNA_M-pyrifera_M_contig123644.4843.1 ID=mRNA_M-pyrifera_M_contig123644.4843.1|Name=mRNA_M-pyrifera_M_contig123644.4843.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig123644:184..474- (Macrocystis pyrifera P11B4 male)
ATGAGCGCGAAGACAGCAGCGGTGCAGGGGTCTGGTTGGGGTTGGTTGGG
GTACGACAAGGCGAAGGACGAGGTGGTGATCGCGACGATGCCGAACCAAG
ACCCGCTGAGCGTGACTGGGCTGGTGCCTCTGCTTGGGATCGACGTGTGG
GAGCACGCCTACTACCTGCAGTACCGCAACGTGCGCCCAGACTACCTCAA
GGCCATCTGGAACGTCGTCAACTTCGGCGACGTGGAGAAGAGACTCGTCC
AAGCGAAAGCACAGTAAATGAGCGCGAAGACAGCAGCGGTGCAGGGGTCT
GGTTGGGGTTGGTTGGGGTACGACAAGGCGAAGGACGAGGTGGTGATCGC
GACGATGCCGAACCAAGACCCGCTGAGCGTGACTGGGCTGGTGCCTCTGC
TTGGGATCGACGTGTGGGAGCACGCCTACTACCTGCAGTACCGCAACGTG
CGCCCAGACTACCTCAAGGCCATCTGGAACGTCGTCAACTTCGGCGACGT
GGAGAAGAGACTCGTCCAAGCGAAAGCACAGTAA
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