mRNA_M-pyrifera_M_contig123642.4842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123642.4842.1
Unique NamemRNA_M-pyrifera_M_contig123642.4842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123642.4842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123642contigM-pyrifera_M_contig123642:141..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.9867454-CDS-M-pyrifera_M_contig123642:140..5061622815754.9867454-CDS-M-pyrifera_M_contig123642:140..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123642 141..506 +
1692277553.984758-CDS-M-pyrifera_M_contig123642:140..5061692277553.984758-CDS-M-pyrifera_M_contig123642:140..506Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123642 141..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123642.4842.1prot_M-pyrifera_M_contig123642.4842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123642 141..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123642.4842.1

>prot_M-pyrifera_M_contig123642.4842.1 ID=prot_M-pyrifera_M_contig123642.4842.1|Name=mRNA_M-pyrifera_M_contig123642.4842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
LTASAAAAPAAWRDPVAISQPGLSAEYLVADGNADGSAVAAWIARTDENV
RSLEVSRREFGGPWGPPERVADIGDSSARVVVAMHDDGTVALAWNDARTL
WTRLRPATTGAWTQAAALSTPG
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mRNA from alignment at M-pyrifera_M_contig123642:141..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123642.4842.1 ID=mRNA_M-pyrifera_M_contig123642.4842.1|Name=mRNA_M-pyrifera_M_contig123642.4842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig123642:141..506+ (Macrocystis pyrifera P11B4 male)
CTGACGGCGAGCGCGGCGGCGGCGCCCGCGGCGTGGCGGGATCCCGTCGC
CATCTCGCAGCCCGGCCTGAGCGCCGAGTACCTGGTCGCCGACGGCAACG
CCGACGGCAGCGCCGTCGCGGCCTGGATCGCACGAACCGACGAGAACGTT
CGCAGCCTCGAGGTCAGTCGCCGGGAGTTCGGCGGCCCGTGGGGTCCGCC
CGAGCGGGTCGCGGACATCGGCGACAGCTCTGCGCGCGTCGTCGTGGCGA
TGCACGACGACGGAACGGTGGCGCTCGCGTGGAACGACGCGCGGACCCTC
TGGACCAGGCTGCGGCCCGCCACGACGGGGGCGTGGACGCAGGCGGCCGC
CCTCTCCACGCCGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123642:141..506+

>mRNA_M-pyrifera_M_contig123642.4842.1 ID=mRNA_M-pyrifera_M_contig123642.4842.1|Name=mRNA_M-pyrifera_M_contig123642.4842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig123642:141..506+ (Macrocystis pyrifera P11B4 male)
CTGACGGCGAGCGCGGCGGCGGCGCCCGCGGCGTGGCGGGATCCCGTCGC
CATCTCGCAGCCCGGCCTGAGCGCCGAGTACCTGGTCGCCGACGGCAACG
CCGACGGCAGCGCCGTCGCGGCCTGGATCGCACGAACCGACGAGAACGTT
CGCAGCCTCGAGGTCAGTCGCCGGGAGTTCGGCGGCCCGTGGGGTCCGCC
CGAGCGGGTCGCGGACATCGGCGACAGCTCTGCGCGCGTCGTCGTGGCGA
TGCACGACGACGGAACGGTGGCGCTCGCGTGGAACGACGCGCGGACCCTC
TGGACCAGGCTGCGGCCCGCCACGACGGGGGCGTGGACGCAGGCGGCCGC
CCTCTCCACGCCGGGCCTGACGGCGAGCGCGGCGGCGGCGCCCGCGGCGT
GGCGGGATCCCGTCGCCATCTCGCAGCCCGGCCTGAGCGCCGAGTACCTG
GTCGCCGACGGCAACGCCGACGGCAGCGCCGTCGCGGCCTGGATCGCACG
AACCGACGAGAACGTTCGCAGCCTCGAGGTCAGTCGCCGGGAGTTCGGCG
GCCCGTGGGGTCCGCCCGAGCGGGTCGCGGACATCGGCGACAGCTCTGCG
CGCGTCGTCGTGGCGATGCACGACGACGGAACGGTGGCGCTCGCGTGGAA
CGACGCGCGGACCCTCTGGACCAGGCTGCGGCCCGCCACGACGGGGGCGT
GGACGCAGGCGGCCGCCCTCTCCACGCCGGGC
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