mRNA_M-pyrifera_M_contig123634.4841.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A2E0RSR3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RSR3_9ACTN) HSP 1 Score: 271 bits (692), Expect = 5.120e-88 Identity = 138/174 (79.31%), Postives = 153/174 (87.93%), Query Frame = 1
Query: 1 RDLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
RDLPG +LI CIVIAG G VWSGISA L+NRFNTSVVISSLLLTYIA A MQWLIRVGI+DPD FVP SRVIG+A LPTVP++NTH GFVIAV +VP+AA +M+RTRFGYRVDVIGHNPIAL+ANEV TG+MLF VLG+VG LSG+AGYIQVAGVT RIN +FSL YGFTAI
Sbjct: 125 RDLPGVVLIPSCIVIAGLTGMVWSGISAELSNRFNTSVVISSLLLTYIATAVMQWLIRVGIKDPDGFVPQSRVIGNAGLPTVPLLNTHLGFVIAVALVPIAAVMMSRTRFGYRVDVIGHNPIALRANEVATGKMLFAVLGIVGFLSGLAGYIQVAGVTTRINAQFSLGYGFTAI 298
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A1Q9SST9_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia sp. CNS-139 TaxID=1904968 RepID=A0A1Q9SST9_9PSEU) HSP 1 Score: 184 bits (467), Expect = 2.100e-55 Identity = 95/174 (54.60%), Postives = 121/174 (69.54%), Query Frame = 1
Query: 1 RDLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
RDLPGPLL+V +V+A G WSG++A L RF TSVVI+SLLL YIAAA + W +RVGIRDP++F P SR IG A+LP +P H GF A+L VPV AAV+ RTRFG+RV+V+G +P L A E F VL G +G+AG+++VAGVT R+ F++ YGFTAI
Sbjct: 41 RDLPGPLLVVTALVVAVVAGGAWSGLTAWLLARFGTSVVITSLLLNYIAAAVLAWAVRVGIRDPEAFTPQSRQIGAAALPDIPGTTIHLGFFFALLAVPVLAAVLRRTRFGFRVEVLGASPDVLAATEARPAYTRFWVLAAAGAFAGLAGFVEVAGVTGRMTQAFAVGYGFTAI 214
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: UPI000E354C80 (ABC transporter permease n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E354C80) HSP 1 Score: 181 bits (460), Expect = 4.540e-53 Identity = 95/171 (55.56%), Postives = 123/171 (71.93%), Query Frame = 1
Query: 10 PGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
PGPLL+V + A GAVWSG+S L +RF TSVVISSLLL Y+ ++ + W IRVGIRDPD FVP SR +G A+L VP ++TH G +IA V VAA +MARTR+GY VD+ GHNP L A E+P R+++ VL + G ++G+AG +QVAGV+ R+N S+ YGFTAI
Sbjct: 129 PGPLLVVVGAGVGAACGAVWSGLSGWLLDRFGTSVVISSLLLNYVGSSILAWAIRVGIRDPDGFVPQSREVGGATLADVPGLDTHAGVLIAAGAVVVAAVLMARTRWGYLVDIHGHNPDVLDAQEMPRRRLVYAVLLVCGAMAGLAGIVQVAGVSGRLNASSSVGYGFTAI 299
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A1Q9SA90_9PSEU (Uncharacterized protein n=5 Tax=Pseudonocardia TaxID=1847 RepID=A0A1Q9SA90_9PSEU) HSP 1 Score: 180 bits (457), Expect = 1.150e-52 Identity = 93/172 (54.07%), Postives = 120/172 (69.77%), Query Frame = 1
Query: 7 LPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
LPG LL+ +V+A A GA W+GI+A + RF SVVI+SLLL Y+AAA + W +RVGIRDP SF P S IGDA+LP +P H GFV+A+L VP AAV+ R+RFG+RV+V+G NP L NE R+ F VL L G +G+AG+++VAGVT R+ F+ YGFTAI
Sbjct: 125 LPGVLLLFSGLVVAVATGAAWAGITAWMLARFGASVVITSLLLNYVAAAGLAWAVRVGIRDPGSFTPQSGPIGDAALPDIPGTTIHLGFVLALLAVPALAAVLTRSRFGFRVEVLGANPEVLAVNEARPERVRFAVLALAGAFAGLAGFVEVAGVTERMTPAFATGYGFTAI 296
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A4R7J9K3_9ACTN (Simple sugar transport system permease protein n=1 Tax=Naumannella halotolerans TaxID=993414 RepID=A0A4R7J9K3_9ACTN) HSP 1 Score: 169 bits (427), Expect = 5.250e-48 Identity = 95/174 (54.60%), Postives = 118/174 (67.82%), Query Frame = 1
Query: 1 RDLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
+ LPGP L+V +V+AG GA WS +SA L +F SVVI+SLLL Y+A A + W IRVGI DP ++ P SR IG A LP+ P N H G +IAVL V V AA +AR R G R+DV+G +P LQ E+ T R VLGL GLL+GIAG+++VAGV+ RI G FS GFTAI
Sbjct: 138 QSLPGPALVVLGLVVAGVSGATWSILSAWLNIQFGASVVITSLLLNYVAQAIVAWSIRVGIPDPAAYTPQSRPIGAAELPSFPGTNLHLGALIAVLAVLVVAAALARGRLGLRIDVMGSSPEVLQTQEISTRRYAVLVLGLAGLLAGIAGFVEVAGVSGRIAGGFSGAVGFTAI 311
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: UPI001E3773AD (ABC transporter permease n=1 Tax=Pseudonocardia sp. TRM90224 TaxID=2812678 RepID=UPI001E3773AD) HSP 1 Score: 167 bits (424), Expect = 1.030e-47 Identity = 87/172 (50.58%), Postives = 116/172 (67.44%), Query Frame = 1
Query: 7 LPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
LPGPLL++ ++ A GA + ++ L +RF SVVI+SLLL Y+AAAA+ W +RVGIRDP SF P SR +G A LPT+P H GF+ A++ VPV A V+ RTRFG RV+V+G NP L NE + VL + G L+G AG+++VAGVT+R+ F+ YGFTAI
Sbjct: 127 LPGPLLVIVALLAAVLAGAALAALTGWLQDRFGASVVITSLLLNYVAAAALAWAVRVGIRDPGSFTPQSRAVGAAGLPTLPGTGLHLGFLFALIAVPVLAVVLRRTRFGLRVEVLGANPDVLAVNEARPAAVRLAVLIVAGSLAGFAGFVEVAGVTDRLTPAFATGYGFTAI 298
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: UPI00101D55E1 (ABC transporter permease n=1 Tax=Phytoactinopolyspora endophytica TaxID=1642495 RepID=UPI00101D55E1) HSP 1 Score: 165 bits (417), Expect = 1.280e-46 Identity = 93/173 (53.76%), Postives = 116/173 (67.05%), Query Frame = 1
Query: 7 LPGPLLIVGCIVIAG-AVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
LP LL VG IAG A GAVWSG+SAV+ NRF SVVI+S+LL Y+A A + W +RVG+R+ +SF P S IGDA+LP + H G V+A+L VPV A + RTRFG R+ V+G +P L+ NEV TGRM VL G L+G+AGY+QVAGV + FS GFTAI
Sbjct: 132 LPAALL-VGTAAIAGMAGGAVWSGLSAVMLNRFKASVVITSILLNYLAIALLTWAVRVGVRNDESFTPKSLPIGDAALPDIGGSGPHAGVVVALLAVPVVAVALNRTRFGLRIAVMGSSPGVLRTNEVSTGRMTLGVLACAGALAGLAGYVQVAGVATTMTPAFSTGLGFTAI 303
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A349B0D9_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0D9_9ACTN) HSP 1 Score: 160 bits (404), Expect = 1.180e-44 Identity = 86/173 (49.71%), Postives = 114/173 (65.90%), Query Frame = 1
Query: 4 DLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
LPGP+LIV I + GA W+G++A NRF SVVIS+LLL Y+A A + + +RV ++DP +P SRV+G A LP + + H G ++A +V PVA V+ RTRFG+RV +GHN AL+ANE+P R+ VL L G L+GIAGYIQVAGV R+ S +GF AI
Sbjct: 133 SLPGPVLIVTSIAMGAVAGAAWAGLAAWFGNRFGASVVISTLLLVYVAEALLAYAVRVPLKDPAGILPQSRVLGGAELPVIGDVRLHVGVLLAAVVAPVAWLVLQRTRFGFRVRAMGHNSEALEANELPAARIATRVLLLSGGLAGIAGYIQVAGVQGRLIQGLSPGFGFAAI 305
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A6V8L3A2_9ACTN (ABC transporter permease n=1 Tax=Phytohabitans rumicis TaxID=1076125 RepID=A0A6V8L3A2_9ACTN) HSP 1 Score: 159 bits (401), Expect = 2.460e-44 Identity = 84/174 (48.28%), Postives = 111/174 (63.79%), Query Frame = 1
Query: 1 RDLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
RD PG L+V +++A G W+ ++A L +RF LL Y+A A + W +RVGIRDP SF P SR IG A+LP +P ++ H GF++AV VP+ AV+ARTRFG+RVDV+G N L ANE R+ VL + G +G AGYIQVAGV+ R+ F+ YGFTAI
Sbjct: 121 RDWPGAPLVVTSLLVAVLAGGAWAAVTAGLNSRFXXXXXXXXXLLNYVATALLAWAVRVGIRDPGSFTPQSREIGAAALPVLPGLDVHLGFLLAVATVPLLGAVLARTRFGFRVDVMGANAEVLGANEARPARVTLAVLLVCGAFAGAAGYIQVAGVSGRLTPGFATGYGFTAI 294
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Match: A0A6B1EI93_9ACTN (ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EI93_9ACTN) HSP 1 Score: 143 bits (361), Expect = 1.830e-38 Identity = 77/173 (44.51%), Postives = 116/173 (67.05%), Query Frame = 1
Query: 4 DLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAAAMQWLIRVGIRDPDSFVPASRVIGDASLPTVPVINTHFGFVIAVLVVPVAAAVMARTRFGYRVDVIGHNPIALQANEVPTGRMLFTVLGLVGLLSGIAGYIQVAGVTNRINGEFSLDYGFTAI 522
DLP +LIV + A GA+W G++ VLANRF S+VIS+L+L++I + +QW +R GIRDP+S+ SR I A+LP+ TH GF+ A+++VP+A ++ R R+G+R+D +GHNP L ANE + R+ +VL + G L+G+AG ++ GV R+ E S+ YG+ AI
Sbjct: 112 DLPRVVLIVIGLGAAIVAGALWGGLAGVLANRFGASIVISTLMLSFIGDSLLQWAVRDGIRDPESYNANSRPITAAALPSFFGQKTHLGFLFALVLVPIAWWLIRRHRWGFRIDALGHNPGTLDANEFSSARVTLSVLVVAGGLAGLAGMVETTGVNIRLGQEASVGYGWDAI 284 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123634.4841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123634.4841.1 >prot_M-pyrifera_M_contig123634.4841.1 ID=prot_M-pyrifera_M_contig123634.4841.1|Name=mRNA_M-pyrifera_M_contig123634.4841.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp RDLPGPLLIVGCIVIAGAVGAVWSGISAVLANRFNTSVVISSLLLTYIAAback to top mRNA from alignment at M-pyrifera_M_contig123634:2..523+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123634.4841.1 ID=mRNA_M-pyrifera_M_contig123634.4841.1|Name=mRNA_M-pyrifera_M_contig123634.4841.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig123634:2..523+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123634:2..523+ >mRNA_M-pyrifera_M_contig123634.4841.1 ID=mRNA_M-pyrifera_M_contig123634.4841.1|Name=mRNA_M-pyrifera_M_contig123634.4841.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig123634:2..523+ (Macrocystis pyrifera P11B4 male)back to top |