mRNA_M-pyrifera_M_contig123632.4840.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123632.4840.1
Unique NamemRNA_M-pyrifera_M_contig123632.4840.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: A0A7S1M4K0_NEODS (Ribosome assembly factor mrt4 n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1M4K0_NEODS)

HSP 1 Score: 96.3 bits (238), Expect = 1.290e-22
Identity = 45/85 (52.94%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:   19 FARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            FARAGS  TVDFT+P GPL +  H+M   L+ LG+P++L +G+I+V  DT VC +G+ELT EAAQ+LKLF   +A M++ L   W
Sbjct:  125 FARAGSTATVDFTVPAGPLAQFPHNMYEHLSKLGLPLKLNKGVINVTADTTVCKEGDELTTEAAQILKLFGIQSAEMKLRLTALW 209
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: UPI0006236B1D (mRNA turnover protein 4 homolog n=1 Tax=Linepithema humile TaxID=83485 RepID=UPI0006236B1D)

HSP 1 Score: 84.3 bits (207), Expect = 7.730e-18
Identity = 38/96 (39.58%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:    1 EFGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCWEREKG 288
            E+ E ++AR+G +T     +P+GPL +  HSM  QL  LG+P  L++G+I ++K   +C KG+ LT E AQ+LKLF++  A+ ++ L+G + ++ G
Sbjct:  123 EYEEMEYARSGFVTPESLELPEGPLPQFDHSMEPQLRRLGMPTSLQKGVITLIKPFKICQKGDVLTPEQAQILKLFDRPLAVFKLLLLGVYTKKHG 218
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: A0A0S4JL62_BODSA (Ribosome assembly factor mrt4 n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JL62_BODSA)

HSP 1 Score: 82.8 bits (203), Expect = 2.220e-17
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    7 GEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            G   +AR G       T+  GPL +  HSM   L+ LG+P++L +G++ +L+DT VC +G+ L+AEAAQLLKLF   TA  R++L   W
Sbjct:  121 GAQVYARTGQTAAETLTLTAGPLPQFPHSMFEHLSKLGLPIKLDKGVVVLLQDTTVCAEGDTLSAEAAQLLKLFGMQTAEFRIELTAHW 209
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: UPI0005EF444B (mRNA turnover protein 4 homolog n=1 Tax=Wasmannia auropunctata TaxID=64793 RepID=UPI0005EF444B)

HSP 1 Score: 81.6 bits (200), Expect = 8.850e-17
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 EFGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCWEREKG 288
            E+ E ++AR+G  T     +P+GPL +  HSM  QL  LG+P  L++G+I ++K   VC KG+ LT E AQ+LKL  K  A+ ++ L+G + ++ G
Sbjct:  123 EYEEMEYARSGFATPETVELPEGPLPQFQHSMEPQLRQLGMPTSLKKGVITLIKPFKVCQKGDALTPEQAQILKLLGKPLAVFKLLLLGVYTKKHG 218
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: W6L9P3_9TRYP (Ribosome assembly factor mrt4 n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L9P3_9TRYP)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-16
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 EFGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            + G   +AR G        +P GPL +  HSM   L  LG+P++L +G+I +L+DT VC +G+ L+AEAAQLLKLF   +A  +++L   W
Sbjct:  119 QVGAAVYARTGQTAAASLVLPAGPLTQFPHSMFDHLARLGLPIKLDKGVIILLQDTTVCEEGDTLSAEAAQLLKLFGVQSAEFKIELTAHW 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: Q389X5_TRYB2 (Ribosome assembly factor mrt4 n=3 Tax=Trypanozoon TaxID=39700 RepID=Q389X5_TRYB2)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   19 FARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCWER 279
            FAR G + T    +  GPL +  HSM   L+ LG+P++L +G+I +L+DT VC  G+ LTAEAAQLLKLF   +A  +++L   W +
Sbjct:  125 FARTGQVATCPLLLRTGPLAQFPHSMFDHLSRLGLPIKLDKGVIVLLRDTTVCEVGDTLTAEAAQLLKLFGIQSAEFKLELTAHWAK 211
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: G0UXE2_TRYCI (Ribosome assembly factor mrt4 n=1 Tax=Trypanosoma congolense (strain IL3000) TaxID=1068625 RepID=G0UXE2_TRYCI)

HSP 1 Score: 80.1 bits (196), Expect = 2.450e-16
Identity = 38/85 (44.71%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   19 FARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            +AR G + T    +  GPL +  HSM   L+ LG+P++L +G+I +L+DT VC  GE L+AEAAQLLKL+   +A  +V+L   W
Sbjct:  125 YARTGQVATCSLPLRAGPLTQFPHSMFDHLSRLGLPIKLEKGVIVLLRDTTVCEVGETLSAEAAQLLKLYGIQSAEFKVELTAHW 209
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BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: A0A6P3X6R6_DINQU (Ribosome assembly factor mrt4 n=1 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3X6R6_DINQU)

HSP 1 Score: 80.1 bits (196), Expect = 3.410e-16
Identity = 37/95 (38.95%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    4 FGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCWEREKG 288
            + + ++ARAG +      +P+GPL +  HSM  QL  LG+P  L++G+I ++K   VC KG+ LT+E AQ+LKL +K  A+ ++ L+G + ++ G
Sbjct:  124 YEKLEYARAGFVAPQSVKLPEGPLPQFQHSMEPQLRQLGMPTSLQKGVITLIKSYKVCQKGDVLTSEQAQILKLLDKPLAVFKLLLLGVYTKKHG 218
[Close]
BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: A0A0M9G3K4_9TRYP (Ribosome assembly factor mrt4 n=2 Tax=Leptomonas TaxID=5683 RepID=A0A0M9G3K4_9TRYP)

HSP 1 Score: 79.3 bits (194), Expect = 5.170e-16
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   19 FARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            +AR G   T    +  GPL +  HSM   L  LG+P++L  G+I +L+DT VC  G+ L+AEAAQLLKLF   +A  ++DL   W
Sbjct:  125 YARTGQTATESLVLKAGPLPQFPHSMFDHLAKLGLPIKLDRGVIVLLQDTTVCEPGDTLSAEAAQLLKLFGMQSAEFKIDLTAHW 209
[Close]
BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Match: W6KQL2_9TRYP (Ribosome assembly factor mrt4 n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KQL2_9TRYP)

HSP 1 Score: 79.0 bits (193), Expect = 6.770e-16
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:    1 EFGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGIIHVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCW 273
            + G   +AR G   T    +  GPL +  HSM   L  LG+P++L +G+I +L+DT VC +G+ L+AEAAQLLKLF   +A  +++L   W
Sbjct:  119 QIGAQVYARTGQTATRSLVLNAGPLPQFPHSMFDHLAKLGLPIKLDKGVIVLLQDTTVCEEGDTLSAEAAQLLKLFGVQSAEFKIELTAHW 209
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123632.4840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1M4K0_NEODS1.290e-2252.94Ribosome assembly factor mrt4 n=1 Tax=Neobodo desi... [more]
UPI0006236B1D7.730e-1839.58mRNA turnover protein 4 homolog n=1 Tax=Linepithem... [more]
A0A0S4JL62_BODSA2.220e-1743.82Ribosome assembly factor mrt4 n=1 Tax=Bodo saltans... [more]
UPI0005EF444B8.850e-1740.63mRNA turnover protein 4 homolog n=1 Tax=Wasmannia ... [more]
W6L9P3_9TRYP1.240e-1641.76Ribosome assembly factor mrt4 n=1 Tax=Phytomonas s... [more]
Q389X5_TRYB21.280e-1644.83Ribosome assembly factor mrt4 n=3 Tax=Trypanozoon ... [more]
G0UXE2_TRYCI2.450e-1644.71Ribosome assembly factor mrt4 n=1 Tax=Trypanosoma ... [more]
A0A6P3X6R6_DINQU3.410e-1638.95Ribosome assembly factor mrt4 n=1 Tax=Dinoponera q... [more]
A0A0M9G3K4_9TRYP5.170e-1644.71Ribosome assembly factor mrt4 n=2 Tax=Leptomonas T... [more]
W6KQL2_9TRYP6.770e-1641.76Ribosome assembly factor mrt4 n=1 Tax=Phytomonas s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123632contigM-pyrifera_M_contig123632:3..296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score84.3
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog244447.XP_008317782.1
Preferred nameMRTO4
KEGG koko:K14815
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
EggNOG OGs394J2@33154,3BHV3@33208,3CTPH@33213,48068@7711,491RR@7742,49UCX@7898,COG0244@1,KOG0816@2759
COG Functional cat.A
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.9117973-CDS-M-pyrifera_M_contig123632:2..2961622815754.9117973-CDS-M-pyrifera_M_contig123632:2..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123632 3..296 +
1692277553.9606602-CDS-M-pyrifera_M_contig123632:2..2961692277553.9606602-CDS-M-pyrifera_M_contig123632:2..296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123632 3..296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123632.4840.1prot_M-pyrifera_M_contig123632.4840.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123632 3..296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123632.4840.1

>prot_M-pyrifera_M_contig123632.4840.1 ID=prot_M-pyrifera_M_contig123632.4840.1|Name=mRNA_M-pyrifera_M_contig123632.4840.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
EFGEYDFARAGSITTVDFTIPKGPLKEMIHSMVHQLTLLGVPVELREGII
HVLKDTPVCVKGEELTAEAAQLLKLFNKVTAIMRVDLVGCWEREKGQW
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mRNA from alignment at M-pyrifera_M_contig123632:3..296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123632.4840.1 ID=mRNA_M-pyrifera_M_contig123632.4840.1|Name=mRNA_M-pyrifera_M_contig123632.4840.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig123632:3..296+ (Macrocystis pyrifera P11B4 male)
GAGTTTGGGGAATATGATTTTGCAAGGGCAGGTAGTATTACGACTGTGGA
TTTCACAATTCCAAAAGGTCCACTCAAGGAAATGATCCATTCCATGGTGC
ACCAACTCACCCTCCTTGGAGTCCCCGTTGAACTCAGAGAAGGCATCATC
CACGTCCTCAAGGACACCCCAGTGTGCGTCAAAGGAGAGGAACTCACAGC
AGAAGCCGCACAACTCCTCAAACTCTTCAACAAAGTCACTGCCATCATGA
GGGTGGATCTCGTAGGCTGCTGGGAGAGGGAGAAAGGGCAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123632:3..296+

>mRNA_M-pyrifera_M_contig123632.4840.1 ID=mRNA_M-pyrifera_M_contig123632.4840.1|Name=mRNA_M-pyrifera_M_contig123632.4840.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig123632:3..296+ (Macrocystis pyrifera P11B4 male)
GAGTTTGGGGAATATGATTTTGCAAGGGCAGGTAGTATTACGACTGTGGA
TTTCACAATTCCAAAAGGTCCACTCAAGGAAATGATCCATTCCATGGTGC
ACCAACTCACCCTCCTTGGAGTCCCCGTTGAACTCAGAGAAGGCATCATC
CACGTCCTCAAGGACACCCCAGTGTGCGTCAAAGGAGAGGAACTCACAGC
AGAAGCCGCACAACTCCTCAAACTCTTCAACAAAGTCACTGCCATCATGA
GGGTGGATCTCGTAGGCTGCTGGGAGAGGGAGAAAGGGCAGTGGGAGTTT
GGGGAATATGATTTTGCAAGGGCAGGTAGTATTACGACTGTGGATTTCAC
AATTCCAAAAGGTCCACTCAAGGAAATGATCCATTCCATGGTGCACCAAC
TCACCCTCCTTGGAGTCCCCGTTGAACTCAGAGAAGGCATCATCCACGTC
CTCAAGGACACCCCAGTGTGCGTCAAAGGAGAGGAACTCACAGCAGAAGC
CGCACAACTCCTCAAACTCTTCAACAAAGTCACTGCCATCATGAGGGTGG
ATCTCGTAGGCTGCTGGGAGAGGGAGAAAGGGCAGTGG
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