mRNA_M-pyrifera_M_contig123610.4834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123610.4834.1
Unique NamemRNA_M-pyrifera_M_contig123610.4834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123610.4834.1 vs. uniprot
Match: A0A2V7VU86_9BACT (Protein kinase domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7VU86_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-6
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 1 
Query:    1 VELRRRITENLMFAGDIDSSLRAAKSLSSEFRLTYPSTRATTLMHMILGEVRLARAKLEREPIGAP--PEALAVQRVDVAESLAMGLSGADALRSMVFTQQWALHSLKVGDPARCARALASLSILSS 375
            +EL RR +E L+ AG +D  L   K++ +   L  P+T    ++ +++G +RL    L+ +       P++  + R+DV  ++  GL+  D +RS  F       +L+VG+P R ARALA+ +  SS
Sbjct:  809 LELMRRASEGLLRAGHVDEGLGVIKNVLASIGLKIPATPRAAVIGILMGRLRLKLRGLKHKDRAEELIPQS-ELTRIDVLWAVVTGLARIDNIRSAYFQPIHLREALRVGEPYRIARALATEAAFSS 934
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123610.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V7VU86_9BACT1.140e-631.50Protein kinase domain-containing protein n=1 Tax=A... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123610contigM-pyrifera_M_contig123610:76..474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog448385.sce6904
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Protein kinase domain
EggNOG OGsCOG3899@1,COG3899@2
COG Functional cat.T
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.5649455-CDS-M-pyrifera_M_contig123610:75..4741622815754.5649455-CDS-M-pyrifera_M_contig123610:75..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123610 76..474 -
1692277553.7965865-CDS-M-pyrifera_M_contig123610:75..4741692277553.7965865-CDS-M-pyrifera_M_contig123610:75..474Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123610 76..474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123610.4834.1prot_M-pyrifera_M_contig123610.4834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123610 76..474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123610.4834.1

>prot_M-pyrifera_M_contig123610.4834.1 ID=prot_M-pyrifera_M_contig123610.4834.1|Name=mRNA_M-pyrifera_M_contig123610.4834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
VELRRRITENLMFAGDIDSSLRAAKSLSSEFRLTYPSTRATTLMHMILGE
VRLARAKLEREPIGAPPEALAVQRVDVAESLAMGLSGADALRSMVFTQQW
ALHSLKVGDPARCARALASLSILSSLQNAPSRS
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mRNA from alignment at M-pyrifera_M_contig123610:76..474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123610.4834.1 ID=mRNA_M-pyrifera_M_contig123610.4834.1|Name=mRNA_M-pyrifera_M_contig123610.4834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig123610:76..474- (Macrocystis pyrifera P11B4 male)
GTGGAGCTTCGGCGCCGCATCACCGAGAACCTAATGTTCGCGGGGGACAT
TGATAGCTCACTGCGTGCCGCCAAAAGTCTCTCTAGCGAGTTTCGCCTCA
CCTATCCTTCAACTCGGGCGACGACGCTCATGCACATGATCTTGGGCGAG
GTGCGTTTGGCTCGCGCAAAGCTCGAACGTGAACCGATTGGCGCTCCTCC
TGAAGCACTGGCTGTCCAACGAGTCGACGTCGCAGAATCTCTGGCCATGG
GCCTCTCGGGTGCCGATGCGCTGCGCTCAATGGTCTTTACGCAACAATGG
GCACTGCACTCGCTCAAGGTTGGAGATCCTGCACGATGTGCGCGCGCCCT
CGCCTCCCTCAGCATTCTGTCCAGCCTGCAAAACGCGCCAAGCCGCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123610:76..474-

>mRNA_M-pyrifera_M_contig123610.4834.1 ID=mRNA_M-pyrifera_M_contig123610.4834.1|Name=mRNA_M-pyrifera_M_contig123610.4834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig123610:76..474- (Macrocystis pyrifera P11B4 male)
GTGGAGCTTCGGCGCCGCATCACCGAGAACCTAATGTTCGCGGGGGACAT
TGATAGCTCACTGCGTGCCGCCAAAAGTCTCTCTAGCGAGTTTCGCCTCA
CCTATCCTTCAACTCGGGCGACGACGCTCATGCACATGATCTTGGGCGAG
GTGCGTTTGGCTCGCGCAAAGCTCGAACGTGAACCGATTGGCGCTCCTCC
TGAAGCACTGGCTGTCCAACGAGTCGACGTCGCAGAATCTCTGGCCATGG
GCCTCTCGGGTGCCGATGCGCTGCGCTCAATGGTCTTTACGCAACAATGG
GCACTGCACTCGCTCAAGGTTGGAGATCCTGCACGATGTGCGCGCGCCCT
CGCCTCCCTCAGCATTCTGTCCAGCCTGCAAAACGCGCCAAGCCGCTCCG
TGGAGCTTCGGCGCCGCATCACCGAGAACCTAATGTTCGCGGGGGACATT
GATAGCTCACTGCGTGCCGCCAAAAGTCTCTCTAGCGAGTTTCGCCTCAC
CTATCCTTCAACTCGGGCGACGACGCTCATGCACATGATCTTGGGCGAGG
TGCGTTTGGCTCGCGCAAAGCTCGAACGTGAACCGATTGGCGCTCCTCCT
GAAGCACTGGCTGTCCAACGAGTCGACGTCGCAGAATCTCTGGCCATGGG
CCTCTCGGGTGCCGATGCGCTGCGCTCAATGGTCTTTACGCAACAATGGG
CACTGCACTCGCTCAAGGTTGGAGATCCTGCACGATGTGCGCGCGCCCTC
GCCTCCCTCAGCATTCTGTCCAGCCTGCAAAACGCGCCAAGCCGCTCC
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