mRNA_M-pyrifera_M_contig123600.4833.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123600.4833.1
Unique NamemRNA_M-pyrifera_M_contig123600.4833.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A7S3FBB2_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FBB2_9VIRI)

HSP 1 Score: 74.3 bits (181), Expect = 1.120e-15
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:   22 GKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPKAKL 195
            GK ++ + ++D DFV +AMG LNPQ AF+ GK+K+ GN+ALAMKL  VLAAARP AK+
Sbjct:   56 GKADITVTVADKDFVQMAMGKLNPQSAFMGGKLKVSGNMALAMKLGPVLAAARPSAKM 113
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A8K1FIR5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FIR5_PYTOL)

HSP 1 Score: 77.4 bits (189), Expect = 1.120e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:   10 TAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPKAKL 195
            TA   K ++ + +SDDDFV +A G LNPQQAF+KGK+KL+GN+ALAMKLN V  A +PK+KL
Sbjct:  188 TAGQKKADVTLTVSDDDFVAIATGKLNPQQAFMKGKLKLKGNMALAMKLNVVFNAIKPKSKL 249
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: UPI00083BB63A (peroxisomal multifunctional enzyme type 2-like isoform X1 n=2 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083BB63A)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-15
Identity = 39/62 (62.90%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPK 186
            +EGT K GKPN  + ISDDDFV LA G LNPQ AF+KGK+KL GN+ LA KL  +L AA  K
Sbjct:  662 HEGTPKSGKPNTTLTISDDDFVGLATGKLNPQTAFMKGKLKLTGNVMLAQKLGPLLKAAEAK 723
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: UPI000E6D77D9 (non-specific lipid-transfer protein-like 1 n=1 Tax=Hyposmocoma kahamanoa TaxID=1477025 RepID=UPI000E6D77D9)

HSP 1 Score: 73.6 bits (179), Expect = 5.850e-15
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPKAKL 195
            YEG  K GK ++ + ISD D ++LA GT++PQ A++KGK+KL GNI LA KL  ++ A +PKAKL
Sbjct:   89 YEGAPKEGKADVTVTISDTDLLELAAGTISPQVAYLKGKLKLAGNIMLAQKLGPLMDANKPKAKL 153
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A7J6ZTI7_9COLE (Uncharacterized protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J6ZTI7_9COLE)

HSP 1 Score: 77.0 bits (188), Expect = 6.390e-15
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAA 174
            YEG  K GKPN  + I+D+DFVDLA+G LNPQQAF+KGK+K+ GN+ LA KL  +L A
Sbjct:  657 YEGDVKEGKPNTTITIADEDFVDLAVGKLNPQQAFMKGKLKVTGNLMLAQKLGPLLKA 714
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A5N4B193_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4B193_PHOPY)

HSP 1 Score: 76.3 bits (186), Expect = 1.170e-14
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAA 177
            YEG  K  KPN  + +SDDDFV+LA+G LNPQQAF+KGK+K+ GNI LA KL  +L AA
Sbjct:  441 YEGAGKDVKPNTTLVVSDDDFVELAVGKLNPQQAFMKGKLKVTGNIMLAQKLGPLLKAA 499
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A7J7BNR9_9COLE (Uncharacterized protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7BNR9_9COLE)

HSP 1 Score: 75.9 bits (185), Expect = 1.630e-14
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAA 177
            YEG  K GK N  + ISD+DFVDLA+G LNPQQAF+KGK+K+ GNI LA KL  +L  A
Sbjct:  673 YEGNVKEGKANTTLTISDEDFVDLAVGKLNPQQAFMKGKLKVTGNIMLAQKLGPLLKNA 731
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A5B8MN56_9CHLO (SCP2 domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MN56_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 3.850e-14
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   25 KPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPKAKL 195
            KP++ + +SDD FV LA G L PQ AFI+GK+K+ GNIAL+MKL  VL AA+PKA L
Sbjct:   59 KPDVTLTMSDDVFVKLASGKLQPQMAFIQGKLKISGNIALSMKLTPVLKAAQPKASL 115
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A7S3FP48_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FP48_9CHLO)

HSP 1 Score: 70.1 bits (170), Expect = 5.870e-14
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 YEGTAKVGKP--NLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAAARPKAKL 195
            ++G++  G P  ++ + +SDD FV LA G L PQ AFI+GK+K++GNIAL+MKL  VL AA+PKA L
Sbjct:   52 FDGSSGSGAPKADVTLTMSDDVFVKLASGKLQPQMAFIQGKLKIQGNIALSMKLTPVLKAAQPKASL 118
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BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Match: A0A1W4WW02_AGRPL (peroxisomal multifunctional enzyme type 2 isoform X1 n=2 Tax=Agrilus planipennis TaxID=224129 RepID=A0A1W4WW02_AGRPL)

HSP 1 Score: 73.9 bits (180), Expect = 7.750e-14
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:    1 YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAMKLNKVLAA 174
            YEG  K GKPN  + +SD+DF++LA+G LNPQ AF+KGK+K+ GNI LA KL  +L A
Sbjct:  658 YEGLPKEGKPNTTLTVSDEDFMELAVGKLNPQAAFMKGKLKIAGNIMLAQKLTPLLKA 715
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123600.4833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3FBB2_9VIRI1.120e-1560.34Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A8K1FIR5_PYTOL1.120e-1561.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI00083BB63A1.340e-1562.90peroxisomal multifunctional enzyme type 2-like iso... [more]
UPI000E6D77D95.850e-1553.85non-specific lipid-transfer protein-like 1 n=1 Tax... [more]
A0A7J6ZTI7_9COLE6.390e-1562.07Uncharacterized protein n=1 Tax=Lamprigera yunnana... [more]
A0A5N4B193_PHOPY1.170e-1462.71Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A7J7BNR9_9COLE1.630e-1462.71Uncharacterized protein n=1 Tax=Abscondita termina... [more]
A0A5B8MN56_9CHLO3.850e-1461.40SCP2 domain-containing protein n=1 Tax=Chloropicon... [more]
A0A7S3FP48_9CHLO5.870e-1453.73Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A1W4WW02_AGRPL7.750e-1458.62peroxisomal multifunctional enzyme type 2 isoform ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123600contigM-pyrifera_M_contig123600:324..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score72.8
Seed ortholog evalue6.8e-11
Seed eggNOG ortholog34506.g7167
KEGG rclassRC00089,RC00770,RC01217
KEGG koko:K12405
KEGG ReactionR04809,R04810,R04812,R04813,R09698
KEGG Pathwayko00120,ko01100,ko04146,map00120,map01100,map04146
KEGG ModuleM00104
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0002119,GO:0002164,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009150,GO:0009259,GO:0009791,GO:0009987,GO:0010033,GO:0010817,GO:0010883,GO:0010888,GO:0016137,GO:0016138,GO:0019236,GO:0019637,GO:0019693,GO:0019748,GO:0019752,GO:0022611,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0040008,GO:0040024,GO:0042221,GO:0042445,GO:0042446,GO:0042579,GO:0042810,GO:0042811,GO:0043053,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0045927,GO:0046483,GO:0048518,GO:0048519,GO:0048580,GO:0048582,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050896,GO:0051094,GO:0051186,GO:0051239,GO:0051240,GO:0055086,GO:0055115,GO:0061062,GO:0061063,GO:0065007,GO:0065008,GO:0071704,GO:0072521,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901576,GO:1901657,GO:1901659,GO:1904069,GO:1904070,GO:1905952,GO:1905953,GO:2000026
EggNOG free text desc.Belongs to the short-chain dehydrogenases reductases (SDR) family
EggNOG OGs1KU33@119089,2QPX4@2759,39K2N@33154,3BD1Y@33208,3CX6W@33213,40AXE@6231,40ZMD@6236,COG2030@1
EC1.1.1.35,4.2.1.107,4.2.1.119
COG Functional cat.Q
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.532151-CDS-M-pyrifera_M_contig123600:323..5211622815754.532151-CDS-M-pyrifera_M_contig123600:323..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123600 324..521 -
1692277553.781067-CDS-M-pyrifera_M_contig123600:323..5211692277553.781067-CDS-M-pyrifera_M_contig123600:323..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123600 324..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123600.4833.1prot_M-pyrifera_M_contig123600.4833.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123600 324..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123600.4833.1

>prot_M-pyrifera_M_contig123600.4833.1 ID=prot_M-pyrifera_M_contig123600.4833.1|Name=mRNA_M-pyrifera_M_contig123600.4833.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=66bp
YEGTAKVGKPNLVMRISDDDFVDLAMGTLNPQQAFIKGKVKLRGNIALAM
KLNKVLAAARPKAKL*
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mRNA from alignment at M-pyrifera_M_contig123600:324..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123600.4833.1 ID=mRNA_M-pyrifera_M_contig123600.4833.1|Name=mRNA_M-pyrifera_M_contig123600.4833.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig123600:324..521- (Macrocystis pyrifera P11B4 male)
TACGAAGGAACCGCGAAAGTAGGGAAACCAAACCTCGTGATGCGAATCAG
TGACGACGACTTTGTGGACCTCGCCATGGGAACGCTCAACCCCCAGCAGG
CCTTCATCAAGGGCAAAGTGAAACTCAGAGGAAACATCGCACTCGCAATG
AAACTCAACAAAGTCCTTGCAGCAGCGAGACCAAAAGCAAAACTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123600:324..521-

>mRNA_M-pyrifera_M_contig123600.4833.1 ID=mRNA_M-pyrifera_M_contig123600.4833.1|Name=mRNA_M-pyrifera_M_contig123600.4833.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig123600:324..521- (Macrocystis pyrifera P11B4 male)
TACGAAGGAACCGCGAAAGTAGGGAAACCAAACCTCGTGATGCGAATCAG
TGACGACGACTTTGTGGACCTCGCCATGGGAACGCTCAACCCCCAGCAGG
CCTTCATCAAGGGCAAAGTGAAACTCAGAGGAAACATCGCACTCGCAATG
AAACTCAACAAAGTCCTTGCAGCAGCGAGACCAAAAGCAAAACTGTGATA
CGAAGGAACCGCGAAAGTAGGGAAACCAAACCTCGTGATGCGAATCAGTG
ACGACGACTTTGTGGACCTCGCCATGGGAACGCTCAACCCCCAGCAGGCC
TTCATCAAGGGCAAAGTGAAACTCAGAGGAAACATCGCACTCGCAATGAA
ACTCAACAAAGTCCTTGCAGCAGCGAGACCAAAAGCAAAACTGTGA
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