mRNA_M-pyrifera_M_contig123599.4832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123599.4832.1
Unique NamemRNA_M-pyrifera_M_contig123599.4832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: UPI0003F87FDC (response regulator transcription factor n=1 Tax=Nocardioides halotolerans TaxID=433660 RepID=UPI0003F87FDC)

HSP 1 Score: 135 bits (341), Expect = 7.730e-38
Identity = 68/98 (69.39%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGR 294
            IR VA GGSFIDD VVD+L+++R+R +DSPL +LS REL+VL E+A G +N A+AESL VS H+VEKH +AIFAKLGL ED E+NRRVKAV+MFLAGR
Sbjct:  124 IRTVAAGGSFIDDDVVDVLVRSRTRTVDSPLASLSARELEVLTEMATGATNSAIAESLFVSAHSVEKHASAIFAKLGLAEDVEVNRRVKAVVMFLAGR 221
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BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: A0A6C7E9T9_ILUCY (Putative NarL family two-component response regulator n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E9T9_ILUCY)

HSP 1 Score: 134 bits (337), Expect = 2.940e-37
Identity = 64/97 (65.98%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAG 291
            +R+V +GGSF+DD VVD L+++R+RM+DSPL  LS RE DVLAE+A G +N  +A+ LHVS+HAVEKH+N+IF+KLGL ED E+NRRVKAVL+FLAG
Sbjct:  124 VRSVHSGGSFVDDAVVDALVRSRTRMVDSPLDLLSERERDVLAEMATGATNAIIADRLHVSQHAVEKHSNSIFSKLGLAEDREVNRRVKAVLLFLAG 220
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BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: UPI00178CE7E9 (response regulator transcription factor n=1 Tax=Myceligenerans sp. TRM 65318 TaxID=2776917 RepID=UPI00178CE7E9)

HSP 1 Score: 131 bits (330), Expect = 2.850e-36
Identity = 67/100 (67.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRGE 300
            IRA A GGS+ID  VV+ +I++RSR++DSP+  L+ RE +VLAEIA G SN AVAESL V+RHAVEKH N+IFAKLGL +D E+NRRVKAVL+FLAG  E
Sbjct:  124 IRAAAAGGSYIDGEVVETMIRSRSRLVDSPIATLTQREREVLAEIATGSSNAAVAESLGVTRHAVEKHANSIFAKLGLVDDPEVNRRVKAVLLFLAGDPE 223
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BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: UPI00112B500D (response regulator transcription factor n=1 Tax=Nocardioides humi TaxID=449461 RepID=UPI00112B500D)

HSP 1 Score: 130 bits (327), Expect = 9.200e-36
Identity = 66/101 (65.35%), Postives = 82/101 (81.19%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRGEV 303
            IRAV +GGS++DD VV++L+++R+R +DSPL+ LSPRE DVLAE+A G +N  +A  L VS HAVEKH +AIFAKLGL ED + NRRVKAVLMFLAGR  V
Sbjct:  124 IRAVGSGGSYVDDDVVEVLVRSRTRSVDSPLELLSPREQDVLAEMATGSTNSRIAGVLGVSEHAVEKHASAIFAKLGLNEDVDSNRRVKAVLMFLAGRDAV 224
[Close]
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: A0A4R7I265_9ACTN (LuxR family two component transcriptional regulator n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7I265_9ACTN)

HSP 1 Score: 129 bits (323), Expect = 3.500e-35
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRG 297
            IR V  GGSFIDD VVD L+++R+RM+DSPL+ L+ RE DVL E+A G +N  +AE L VS HA+EKH+N IF KLGL ED E+NRRVKAVL+FLAG G
Sbjct:  124 IRTVHAGGSFIDDMVVDALVRSRTRMVDSPLEVLTDRERDVLGEMATGATNNVIAERLGVSAHAIEKHSNMIFTKLGLAEDPEVNRRVKAVLVFLAGSG 222
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BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: UPI001EEF9ABE (response regulator transcription factor n=1 Tax=Nocardioides sp. DJM-14 TaxID=2803368 RepID=UPI001EEF9ABE)

HSP 1 Score: 128 bits (322), Expect = 4.820e-35
Identity = 63/98 (64.29%), Postives = 82/98 (83.67%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGR 294
            IR V TGGS+IDD VVD+L+++R+R +DSPL  L+ REL+VL+E+A G +N A+A++L VS H+VEKH +AIF KLGLTED EINRRV AVL+FL+GR
Sbjct:  124 IRTVGTGGSYIDDEVVDVLVRSRTRTVDSPLTGLTARELEVLSEMATGATNSAIADALGVSEHSVEKHASAIFMKLGLTEDVEINRRVTAVLLFLSGR 221
[Close]
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: UPI000E343F9E (response regulator transcription factor n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E343F9E)

HSP 1 Score: 119 bits (297), Expect = 2.650e-31
Identity = 58/97 (59.79%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAG 291
            IR VA GGSFIDD VV+ L++AR+R++DSP+++LS REL+VL+ +A G +N A+A+ L +S H+VEKHT  IFAKL L    ++NRRVKAVL+FLAG
Sbjct:  124 IRTVAVGGSFIDDMVVEALVRARTRLVDSPIESLSARELEVLSAMATGANNEAIAQRLGISAHSVEKHTTVIFAKLSLDAASDVNRRVKAVLVFLAG 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: A0A7V8Y1K3_9PSEU (Response regulator transcription factor n=1 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A7V8Y1K3_9PSEU)

HSP 1 Score: 113 bits (283), Expect = 3.050e-29
Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRG 297
            +RAVA+G S ID  VVD+L+ A  R   SPL AL+PRE +VLAEIA G+SN  VA +L +S  AVEKH N +FAKLGL+ + ++NRRVKAVL++L+ RG
Sbjct:  123 VRAVASGDSVIDPAVVDMLVSASGRARSSPLAALTPREREVLAEIAQGKSNAGVAGALFLSERAVEKHINVLFAKLGLSTESDVNRRVKAVLLYLSDRG 221
[Close]
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: A0A538BCA9_9ACTN (Response regulator transcription factor (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538BCA9_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 3.450e-29
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRG 297
            I  VA GGS ID  V+D L+ ARSR  +SPL+ L+PRE ++L+E+A G++N A+A++L +S  AVEKH N+IF+KL L E+ EI+RRVKAVL+FL+ RG
Sbjct:   87 IEEVARGGSVIDPRVIDALVAARSRAAESPLRQLTPRETEILSEMAQGKNNAAIAQTLVLSERAVEKHINSIFSKLALGEEPEIHRRVKAVLLFLSARG 185
[Close]
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Match: A0A3C1CKV7_9ACTN (DNA-binding response regulator n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C1CKV7_9ACTN)

HSP 1 Score: 112 bits (281), Expect = 6.090e-29
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:    1 IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRSNIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRG 297
            IR VA GGS ID  VVD L+ ARS+  DSPL  L+PRE ++L E+A G++N AVA SL +S  AVEKH N+IF+KL L+E+ +++RRVKAVL+FL+ +G
Sbjct:  123 IREVAGGGSVIDPAVVDALVAARSKAADSPLHRLTPRETEILGEMAQGKNNAAVAASLVLSERAVEKHINSIFSKLALSEEPDVHRRVKAVLLFLSAQG 221
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123599.4832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003F87FDC7.730e-3869.39response regulator transcription factor n=1 Tax=No... [more]
A0A6C7E9T9_ILUCY2.940e-3765.98Putative NarL family two-component response regula... [more]
UPI00178CE7E92.850e-3667.00response regulator transcription factor n=1 Tax=My... [more]
UPI00112B500D9.200e-3665.35response regulator transcription factor n=1 Tax=No... [more]
A0A4R7I265_9ACTN3.500e-3564.65LuxR family two component transcriptional regulato... [more]
UPI001EEF9ABE4.820e-3564.29response regulator transcription factor n=1 Tax=No... [more]
UPI000E343F9E2.650e-3159.79response regulator transcription factor n=1 Tax=De... [more]
A0A7V8Y1K3_9PSEU3.050e-2958.59Response regulator transcription factor n=1 Tax=Ps... [more]
A0A538BCA9_9ACTN3.450e-2956.57Response regulator transcription factor (Fragment)... [more]
A0A3C1CKV7_9ACTN6.090e-2957.58DNA-binding response regulator n=1 Tax=Acidimicrob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123599contigM-pyrifera_M_contig123599:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.3
Seed ortholog evalue7.8e-30
Seed eggNOG ortholog1122609.AUGT01000019_gene251
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helix_turn_helix, Lux Regulon
EggNOG OGs2IIDD@201174,4DWNU@85009,COG2197@1,COG2197@2
COG Functional cat.KT
Best tax levelPropionibacteriales
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.4925537-CDS-M-pyrifera_M_contig123599:2..3111622815754.4925537-CDS-M-pyrifera_M_contig123599:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123599 3..311 +
1692277553.7672698-CDS-M-pyrifera_M_contig123599:2..3111692277553.7672698-CDS-M-pyrifera_M_contig123599:2..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123599 3..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123599.4832.1prot_M-pyrifera_M_contig123599.4832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123599 3..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123599.4832.1

>prot_M-pyrifera_M_contig123599.4832.1 ID=prot_M-pyrifera_M_contig123599.4832.1|Name=mRNA_M-pyrifera_M_contig123599.4832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
IRAVATGGSFIDDTVVDILIQARSRMIDSPLQALSPRELDVLAEIAAGRS
NIAVAESLHVSRHAVEKHTNAIFAKLGLTEDDEINRRVKAVLMFLAGRGE
VS*
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mRNA from alignment at M-pyrifera_M_contig123599:3..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123599.4832.1 ID=mRNA_M-pyrifera_M_contig123599.4832.1|Name=mRNA_M-pyrifera_M_contig123599.4832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig123599:3..311+ (Macrocystis pyrifera P11B4 male)
ATACGGGCCGTCGCCACTGGAGGGTCGTTCATCGACGACACGGTTGTCGA
CATCCTGATTCAGGCCCGCTCTCGCATGATCGATTCGCCCTTGCAGGCGC
TTTCGCCGCGCGAGCTCGACGTGCTCGCCGAGATCGCCGCCGGCCGCAGC
AACATCGCCGTGGCCGAGTCGCTCCACGTGAGTCGTCACGCGGTCGAGAA
GCACACCAACGCCATCTTCGCGAAGCTCGGACTGACCGAGGACGACGAGA
TCAATAGGCGGGTCAAGGCCGTGCTGATGTTCCTCGCCGGGCGGGGAGAG
GTGTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123599:3..311+

>mRNA_M-pyrifera_M_contig123599.4832.1 ID=mRNA_M-pyrifera_M_contig123599.4832.1|Name=mRNA_M-pyrifera_M_contig123599.4832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig123599:3..311+ (Macrocystis pyrifera P11B4 male)
ATACGGGCCGTCGCCACTGGAGGGTCGTTCATCGACGACACGGTTGTCGA
CATCCTGATTCAGGCCCGCTCTCGCATGATCGATTCGCCCTTGCAGGCGC
TTTCGCCGCGCGAGCTCGACGTGCTCGCCGAGATCGCCGCCGGCCGCAGC
AACATCGCCGTGGCCGAGTCGCTCCACGTGAGTCGTCACGCGGTCGAGAA
GCACACCAACGCCATCTTCGCGAAGCTCGGACTGACCGAGGACGACGAGA
TCAATAGGCGGGTCAAGGCCGTGCTGATGTTCCTCGCCGGGCGGGGAGAG
GTGTCGTGAATACGGGCCGTCGCCACTGGAGGGTCGTTCATCGACGACAC
GGTTGTCGACATCCTGATTCAGGCCCGCTCTCGCATGATCGATTCGCCCT
TGCAGGCGCTTTCGCCGCGCGAGCTCGACGTGCTCGCCGAGATCGCCGCC
GGCCGCAGCAACATCGCCGTGGCCGAGTCGCTCCACGTGAGTCGTCACGC
GGTCGAGAAGCACACCAACGCCATCTTCGCGAAGCTCGGACTGACCGAGG
ACGACGAGATCAATAGGCGGGTCAAGGCCGTGCTGATGTTCCTCGCCGGG
CGGGGAGAGGTGTCGTGA
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