mRNA_M-pyrifera_M_contig123595.4830.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123595.4830.1
Unique NamemRNA_M-pyrifera_M_contig123595.4830.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: A0A5A8DDS2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDS2_CAFRO)

HSP 1 Score: 63.2 bits (152), Expect = 3.150e-9
Identity = 35/94 (37.23%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   52 HAEFVRREGNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKTRAIPKAKEAIEAL 333
            H E V   GN+C L   + + LH A  A       D  F +AI +T+ A GCN SR C+ G +LGA  GT+ VP  W  +TR     + + +A+
Sbjct:  295 HQEVVDELGNTCKLMNSMQTPLHAAAAASPDKAAMD-CFVEAIRATMVARGCNCSRLCIAGAVLGASLGTSAVPEDWTARTREAEDIRRSADAI 387          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: A0A553NEN5_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553NEN5_TIGCA)

HSP 1 Score: 58.9 bits (141), Expect = 9.070e-8
Identity = 37/97 (38.14%), Postives = 50/97 (51.55%), Query Frame = 1
Query:   19 VKRALASIDE----DHAEFVRRE-GNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKT 294
            V R+L  +++    DH + V+   G+ C+ PG    ALH     E         F +A+ STIRA GCN SRS  IG   GA+ G   +P  W+EKT
Sbjct:  239 VYRSLGVVEDKLGLDHVQAVQTVFGSPCYNPGSFQGALHAFQREES--------FPEAVRSTIRAGGCNCSRSLFIGACAGAKHGLDAIPMEWLEKT 327          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: UPI000A7D7B78 (ADP-ribosylglycohydrolase family protein n=1 Tax=Pelagibacter ubique TaxID=198252 RepID=UPI000A7D7B78)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-7
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 1
Query:    7 VVEAVKRALASIDEDHAEFVRREGNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKTRAIPKAK 315
            +VE +        E H++ V++ G +C  PG   S++H  L ++         +  AI  TI+A GCN SRS  IG    A  G   +P AW++KT  IP  K
Sbjct:   65 IVEDINLLKKLKKEPHSKIVKKFGMACSYPGTFNSSIHAILSSKN--------YKSAILKTIKAGGCNCSRSNFIGAYFSALKGVGTIPKAWIKKT--IPAKK 157          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: V4AC05_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AC05_LOTGI)

HSP 1 Score: 55.8 bits (133), Expect = 1.090e-6
Identity = 30/96 (31.25%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    7 VVEAVKRALASIDEDHAEFVRREGNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKT 294
            + E +++ L +   DH       G +C++PG L +ALH  +  +         +A AI +TI+A GC+ASRS +IG  +  + G   +P  W ++T
Sbjct:  225 LAEYLQQVLDNKSTDHTAAANNFGKACYVPGNLQTALHSIVTYDN--------YATAIRATIKAGGCSASRSNLIGACIAVQCGLESIPETWWQRT 312          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: UPI000359B039 (crystallin J1C n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359B039)

HSP 1 Score: 55.8 bits (133), Expect = 1.090e-6
Identity = 33/89 (37.08%), Postives = 45/89 (50.56%), Query Frame = 1
Query:   31 LASIDEDHAEFVRREGNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKTR 297
            L +    H E V     SC LPG L SA+HG L            +  ++ +TIRA GCNASRS  IG    A+ G   +P +W ++T+
Sbjct:  237 LKASSTSHVEAVPTFKKSCQLPGSLQSAMHGVLTVPG--------YVDSVRTTIRAGGCNASRSGFIGACRAAQEGFDAIPESWRQRTK 317          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: A0A8K0A9F3_BRALA (Hypp4567 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0A9F3_BRALA)

HSP 1 Score: 51.2 bits (121), Expect = 5.270e-6
Identity = 29/69 (42.03%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   88 HLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKT 294
            +LP  L SA+HG +  E         +  AI +TIRA GCN+SRS +IG   GA+ G   +P  W  KT
Sbjct:   18 YLPKSLQSAVHGVVTGED--------YVSAIRTTIRAGGCNSSRSSIIGACFGAQVGVEGIPADWRAKT 78          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: C3Y2Y9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Y2Y9_BRAFL)

HSP 1 Score: 53.5 bits (127), Expect = 6.620e-6
Identity = 33/92 (35.87%), Postives = 48/92 (52.17%), Query Frame = 1
Query:   22 KRALASIDEDHAEFVRRE-GNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKT 294
            +++   +D+    F+++   N   LP  L SA+HG +          G +  AI +TIRA GCNASRS +IG   GA+ G   +P  W  KT
Sbjct:  191 RKSPTDLDQAMVSFLQKVLDNRDDLPKSLQSAVHGVV--------TGGDYVSAIRTTIRAGGCNASRSSIIGACFGAQVGVEGIPADWKAKT 274          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: A0A7V8TXU5_9PROT (ADP-ribosylglycohydrolase n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A7V8TXU5_9PROT)

HSP 1 Score: 52.4 bits (124), Expect = 1.770e-5
Identity = 28/96 (29.17%), Postives = 47/96 (48.96%), Query Frame = 1
Query:    4 EVVEAVKRALASIDEDHAEFVRREGNSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEK 291
            +V++ +K    +  + H + V++ G +C  PG   S++H  + +          +  AI  TIRA GCN SRS  +G    A  G + +P  W+ K
Sbjct:  217 DVIKGIKMVKRNKFKSHNKMVKKLGITCRYPGTFLSSIHAIITSNS--------YKSAILKTIRAGGCNCSRSNFVGAYFAAIHGLSSIPTKWISK 304          
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Match: A0A6P5AKG8_BRABE (crystallin J1C-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5AKG8_BRABE)

HSP 1 Score: 50.8 bits (120), Expect = 6.280e-5
Identity = 31/72 (43.06%), Postives = 40/72 (55.56%), Query Frame = 1
Query:   79 NSCHLPGGLASALHGALHAEKHFGGADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKT 294
            N+  LP  L SA+HG +       G D  +  A+ +TIRA GCNASRS +IG   GA+ G   +P  W  KT
Sbjct:  244 NTGDLPKSLQSAVHGVVT------GRD--YVSAVRATIRAGGCNASRSSIIGACFGAQVGVEGIPADWKAKT 307          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123595.4830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A5A8DDS2_CAFRO3.150e-937.23Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A553NEN5_TIGCA9.070e-838.14Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
UPI000A7D7B781.110e-733.98ADP-ribosylglycohydrolase family protein n=1 Tax=P... [more]
V4AC05_LOTGI1.090e-631.25Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
UPI000359B0391.090e-637.08crystallin J1C n=1 Tax=Aplysia californica TaxID=6... [more]
A0A8K0A9F3_BRALA5.270e-642.03Hypp4567 protein n=1 Tax=Branchiostoma lanceolatum... [more]
C3Y2Y9_BRAFL6.620e-635.87Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]
A0A7V8TXU5_9PROT1.770e-529.17ADP-ribosylglycohydrolase n=1 Tax=Pelagibacterales... [more]
A0A6P5AKG8_BRABE6.280e-543.06crystallin J1C-like n=1 Tax=Branchiostoma belcheri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123595contigM-pyrifera_M_contig123595:54..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.4227068-CDS-M-pyrifera_M_contig123595:53..4071622815754.4227068-CDS-M-pyrifera_M_contig123595:53..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123595 54..407 +
1692277553.7400548-CDS-M-pyrifera_M_contig123595:53..4071692277553.7400548-CDS-M-pyrifera_M_contig123595:53..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123595 54..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123595.4830.1prot_M-pyrifera_M_contig123595.4830.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123595 54..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123595.4830.1

>prot_M-pyrifera_M_contig123595.4830.1 ID=prot_M-pyrifera_M_contig123595.4830.1|Name=mRNA_M-pyrifera_M_contig123595.4830.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
EEVVEAVKRALASIDEDHAEFVRREGNSCHLPGGLASALHGALHAEKHFG
GADGVFAKAISSTIRATGCNASRSCVIGTLLGARFGTAIVPPAWVEKTRA
IPKAKEAIEALTAGGKE*
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mRNA from alignment at M-pyrifera_M_contig123595:54..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123595.4830.1 ID=mRNA_M-pyrifera_M_contig123595.4830.1|Name=mRNA_M-pyrifera_M_contig123595.4830.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig123595:54..407+ (Macrocystis pyrifera P11B4 male)
GAGGAGGTCGTGGAAGCAGTGAAGCGAGCTTTGGCTAGCATTGACGAGGA CCATGCCGAGTTTGTGCGAAGAGAAGGCAACTCTTGCCACCTCCCAGGAG GACTAGCGTCGGCTCTGCATGGGGCGCTGCATGCCGAGAAGCACTTTGGA GGCGCAGATGGGGTGTTTGCAAAAGCCATCTCCTCCACTATCCGGGCCAC CGGATGCAACGCCTCCAGATCCTGCGTCATCGGTACCCTTCTCGGCGCTC GCTTCGGCACCGCCATCGTCCCACCCGCATGGGTGGAGAAGACCCGCGCC ATCCCCAAGGCAAAAGAAGCTATCGAAGCTCTCACTGCAGGCGGAAAGGA GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123595:54..407+

>mRNA_M-pyrifera_M_contig123595.4830.1 ID=mRNA_M-pyrifera_M_contig123595.4830.1|Name=mRNA_M-pyrifera_M_contig123595.4830.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig123595:54..407+ (Macrocystis pyrifera P11B4 male)
GAGGAGGTCGTGGAAGCAGTGAAGCGAGCTTTGGCTAGCATTGACGAGGA
CCATGCCGAGTTTGTGCGAAGAGAAGGCAACTCTTGCCACCTCCCAGGAG
GACTAGCGTCGGCTCTGCATGGGGCGCTGCATGCCGAGAAGCACTTTGGA
GGCGCAGATGGGGTGTTTGCAAAAGCCATCTCCTCCACTATCCGGGCCAC
CGGATGCAACGCCTCCAGATCCTGCGTCATCGGTACCCTTCTCGGCGCTC
GCTTCGGCACCGCCATCGTCCCACCCGCATGGGTGGAGAAGACCCGCGCC
ATCCCCAAGGCAAAAGAAGCTATCGAAGCTCTCACTGCAGGCGGAAAGGA
GTGAGAGGAGGTCGTGGAAGCAGTGAAGCGAGCTTTGGCTAGCATTGACG
AGGACCATGCCGAGTTTGTGCGAAGAGAAGGCAACTCTTGCCACCTCCCA
GGAGGACTAGCGTCGGCTCTGCATGGGGCGCTGCATGCCGAGAAGCACTT
TGGAGGCGCAGATGGGGTGTTTGCAAAAGCCATCTCCTCCACTATCCGGG
CCACCGGATGCAACGCCTCCAGATCCTGCGTCATCGGTACCCTTCTCGGC
GCTCGCTTCGGCACCGCCATCGTCCCACCCGCATGGGTGGAGAAGACCCG
CGCCATCCCCAAGGCAAAAGAAGCTATCGAAGCTCTCACTGCAGGCGGAA
AGGAGTGA
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