mRNA_M-pyrifera_M_contig123589.4829.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123589.4829.1
Unique NamemRNA_M-pyrifera_M_contig123589.4829.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: UPI001BA3F253 (CPBP family intramembrane metalloprotease n=2 Tax=Carboxylicivirga TaxID=1628153 RepID=UPI001BA3F253)

HSP 1 Score: 72.4 bits (176), Expect = 2.840e-13
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAK--------TTGLATLDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  LE S  G N+  KY ++I++ F+GGQ  G IPLL            T  + ++DF  MG++S+ GLAL+ILPFI+SLVL V L K
Sbjct:    1 MKHLESSYTGQNEWWKYLLLILISFLGGQFFGAIPLLVVLAWAGSGNIDTAAVQSMDFAAMGINSSLGLALIILPFILSLVLFVVLFK 88          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: X5E3Q3_9BACT (Uncharacterized protein n=1 Tax=Draconibacterium orientale TaxID=1168034 RepID=X5E3Q3_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 1.430e-11
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLL-----QFAKTTG-LAT----LDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  L ++ DG NQ  KY +VIIV  I GQI+G IPL+       A   G +AT    +D    G+D N GLALM++PFIV LVL + L+K
Sbjct:    1 MKHLTRAFDGQNQWWKYLVVIIVAVIVGQIVGAIPLIVVIGVSVAMNGGQVATPENAMDLSAYGIDPNLGLALMVIPFIVMLVLAIVLIK 90          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A6I6K1R0_9BACT (CPBP family intramembrane metalloprotease n=2 Tax=Maribellus TaxID=2678352 RepID=A0A6I6K1R0_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 3.610e-10
Identity = 36/91 (39.56%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAKTTGLAT-----------LDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  LE +L   NQ  KY +V+++GF+GGQI+G IPL+  A   G A            +D    G+D N GL LM+ PF+V L + + L+K
Sbjct:    1 MKHLESALKQENQWWKYLLVLLIGFLGGQIIGAIPLVV-AMGIGAARNGGNIVTPDNPMDLSAYGIDPNLGLVLMVFPFLVMLFISILLIK 90          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A0D8J976_9BACT (Uncharacterized protein n=2 Tax=Draconibacterium TaxID=1471399 RepID=A0A0D8J976_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 6.690e-10
Identity = 38/90 (42.22%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLL-----QFAKTTG-LAT----LDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  L ++ DG NQ  K+ +VI+V    GQI+G IPL+       AK  G +AT    +D    G++ + GLALM++PFIV+LVL + L+K
Sbjct:    1 MKHLSRAFDGENQWWKFVVVILVALGVGQIVGAIPLIVVMGISIAKNGGQVATPENPMDLSAYGINPSLGLALMVIPFIVTLVLAIVLIK 90          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A6C0RG06_9BACT (CPBP family intramembrane metalloprotease n=1 Tax=Draconibacterium halophilum TaxID=2706887 RepID=A0A6C0RG06_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.290e-9
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLL-----QFAKTTG-LAT----LDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  L ++ DG NQ  K+ +V++V  I GQI+G IPL+       A   G +AT    +D    G++ + GLALM++PFIV+LVL + L+K
Sbjct:    1 MKHLSRAFDGQNQWWKFLVVMVVAVIVGQIIGAIPLIVVMGVSIAMNGGQVATPENPMDLAAYGINPSLGLALMVIPFIVTLVLAIVLIK 90          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A425XXK6_9BACT (CPBP family intramembrane metalloprotease n=1 Tax=Ancylomarina euxinus TaxID=2283627 RepID=A0A425XXK6_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 1.740e-9
Identity = 33/89 (37.08%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPL---LQFAKTTGLATL------DFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  LE++  G N   +Y +V ++ F+G Q++G +PL   + F   +G  T+      DF ++G+D N GLALMIL FI+ L + V ++K
Sbjct:    1 MKHLERAFIGPNHWWRYILVTLIAFVGAQVIGALPLGMVMMFYTLSGKGTINPENQMDFTSLGIDPNIGLALMILSFIIGLTIFVLILK 89          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A5M8P004_9BACT (Uncharacterized protein n=1 Tax=Candidatus Ordinivivax streblomastigis TaxID=2540710 RepID=A0A5M8P004_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 1.050e-7
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAKTTGLATLDFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M FLE++ DG NQ  KYA+V + G++GGQ++G+IPLL       +A L   TM       L L++L   VSL   V L+K
Sbjct:    1 MKFLERAFDGQNQFWKYAVVCLGGYLGGQLIGSIPLLGVLTYKEIADLSKNTM-------LFLLLLSVAVSLFCIVFLIK 73          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: UPI001BAD3FDF (CPBP family intramembrane metalloprotease n=1 Tax=Carboxylicivirga linearis TaxID=1628157 RepID=UPI001BAD3FDF)

HSP 1 Score: 55.5 bits (132), Expect = 3.890e-7
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = 1
Query:    1 MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAKTT--GLATL------DFETMGLDSNFGLALMILPFIVSLVLCVGLVK 240
            M  LE +L   N    Y ++I+V F   Q++G IPL     T   G+  L      DF ++G++S+FGLAL+++PFIVS      LVK
Sbjct:    1 MKHLESALKTKNDWWAYLVIIVVSFFIAQVVGGIPLGIVLATADGGMQALSEGNVIDFTSLGINSSFGLALIVIPFIVSFFTLKALVK 88          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: A0A7C1MGN8_9BACT (CPBP family intramembrane metalloprotease n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C1MGN8_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.910e-6
Identity = 29/82 (35.37%), Postives = 41/82 (50.00%), Query Frame = 1
Query:    7 FLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAKTTGLAT-----------LDFETMGLDSNFGLALMILPFIVSLV 219
            F E +L G N   +Y ++ +V F     +G +PL+      G+A            +D    G+DSN GL LMILPFIV L+
Sbjct:    2 FFESALAGKNAFWRYFVIFVVVFAATNTIGALPLIIVIVMKGIANPEILDNNPENLMDLSVYGIDSNTGLVLMILPFIVGLI 83          
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Match: UPI001431BF34 (CPBP family intramembrane metalloprotease n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI001431BF34)

HSP 1 Score: 50.8 bits (120), Expect = 1.750e-5
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1
Query:   10 LEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLL------------QFAKTTGLATLDFETMGLDSNFGLALMILPFIVSLVLCVGLV 237
            LE++ +  NQ  KY IV ++     Q +G+IPL+             F K      +DF   G+D NFGL LM++PF+V  V+ + L+
Sbjct:    5 LERAFNQENQIWKYVIVFLLSLFISQTVGSIPLVITLVIKIAQNGSDFVKPEN--PMDFGAYGIDPNFGLILMLIPFVVMFVVSMFLI 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123589.4829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI001BA3F2532.840e-1345.45CPBP family intramembrane metalloprotease n=2 Tax=... [more]
X5E3Q3_9BACT1.430e-1146.67Uncharacterized protein n=1 Tax=Draconibacterium o... [more]
A0A6I6K1R0_9BACT3.610e-1039.56CPBP family intramembrane metalloprotease n=2 Tax=... [more]
A0A0D8J976_9BACT6.690e-1042.22Uncharacterized protein n=2 Tax=Draconibacterium T... [more]
A0A6C0RG06_9BACT1.290e-941.11CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A425XXK6_9BACT1.740e-937.08CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A5M8P004_9BACT1.050e-742.50Uncharacterized protein n=1 Tax=Candidatus Ordiniv... [more]
UPI001BAD3FDF3.890e-738.64CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A7C1MGN8_9BACT1.910e-635.37CPBP family intramembrane metalloprotease n=1 Tax=... [more]
UPI001431BF341.750e-534.09CPBP family intramembrane metalloprotease n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123589contigM-pyrifera_M_contig123589:284..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog1168034.FH5T_15035
Preferred nameyyaK
KEGG koko:K07052
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CAAX protease self-immunity
EggNOG OGs2FS4V@200643,4NFKV@976,COG1266@1,COG1266@2
COG Functional cat.S
Best tax levelBacteroidia
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.3869607-CDS-M-pyrifera_M_contig123589:283..5231622815754.3869607-CDS-M-pyrifera_M_contig123589:283..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123589 284..523 +
1692277553.730322-CDS-M-pyrifera_M_contig123589:283..5231692277553.730322-CDS-M-pyrifera_M_contig123589:283..523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123589 284..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123589.4829.1prot_M-pyrifera_M_contig123589.4829.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123589 284..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123589.4829.1

>prot_M-pyrifera_M_contig123589.4829.1 ID=prot_M-pyrifera_M_contig123589.4829.1|Name=mRNA_M-pyrifera_M_contig123589.4829.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
MNFLEQSLDGNNQAGKYAIVIIVGFIGGQILGTIPLLQFAKTTGLATLDF
ETMGLDSNFGLALMILPFIVSLVLCVGLVK
back to top

mRNA from alignment at M-pyrifera_M_contig123589:284..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123589.4829.1 ID=mRNA_M-pyrifera_M_contig123589.4829.1|Name=mRNA_M-pyrifera_M_contig123589.4829.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig123589:284..523+ (Macrocystis pyrifera P11B4 male)
ATGAATTTTTTAGAACAATCTTTGGACGGAAATAATCAGGCCGGAAAGTA TGCAATTGTAATCATAGTTGGGTTTATTGGTGGCCAGATTTTAGGTACTA TTCCCTTACTCCAGTTTGCCAAAACCACAGGTCTGGCCACATTAGATTTT GAAACAATGGGTTTAGACTCGAATTTTGGTCTGGCACTTATGATTTTACC TTTTATTGTTTCACTTGTCTTGTGTGTAGGGCTTGTAAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123589:284..523+

>mRNA_M-pyrifera_M_contig123589.4829.1 ID=mRNA_M-pyrifera_M_contig123589.4829.1|Name=mRNA_M-pyrifera_M_contig123589.4829.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig123589:284..523+ (Macrocystis pyrifera P11B4 male)
ATGAATTTTTTAGAACAATCTTTGGACGGAAATAATCAGGCCGGAAAGTA
TGCAATTGTAATCATAGTTGGGTTTATTGGTGGCCAGATTTTAGGTACTA
TTCCCTTACTCCAGTTTGCCAAAACCACAGGTCTGGCCACATTAGATTTT
GAAACAATGGGTTTAGACTCGAATTTTGGTCTGGCACTTATGATTTTACC
TTTTATTGTTTCACTTGTCTTGTGTGTAGGGCTTGTAAAGATGAATTTTT
TAGAACAATCTTTGGACGGAAATAATCAGGCCGGAAAGTATGCAATTGTA
ATCATAGTTGGGTTTATTGGTGGCCAGATTTTAGGTACTATTCCCTTACT
CCAGTTTGCCAAAACCACAGGTCTGGCCACATTAGATTTTGAAACAATGG
GTTTAGACTCGAATTTTGGTCTGGCACTTATGATTTTACCTTTTATTGTT
TCACTTGTCTTGTGTGTAGGGCTTGTAAAG
back to top