mRNA_M-pyrifera_M_contig123587.4828.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123587.4828.1
Unique NamemRNA_M-pyrifera_M_contig123587.4828.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123587.4828.1 vs. uniprot
Match: A0A7V2Y4R2_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y4R2_9BACT)

HSP 1 Score: 106 bits (264), Expect = 3.960e-24
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   34 FATFIQENPLHRKRTRAETIMGRLYYELGDYDKAIDMLRDQADPANDPQAALTMLRYLARAYSQKSEYEAAESAYLQAASFPGNYTVDEDFRSLGELYKIRADLATSDANRD 369
            F  F+  NP H K  RA+ +MG LY++LGDY K+I++L+D +    DP+AAL  LR LARA  +  +Y+AAESAYLQAA   GNYT D D+  LG+L++ +++    +A+R+
Sbjct:  374 FERFVSANPGHVKTARAKALMGLLYFDLGDYAKSIELLQDPSLALADPEAALPALRTLARARWKMGDYDAAESAYLQAAVLAGNYTPDRDYEELGDLHRWQSERDEDEASRE 485
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BLAST of mRNA_M-pyrifera_M_contig123587.4828.1 vs. uniprot
Match: A0A7Y5C520_9BACT (LysM peptidoglycan-binding domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C520_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 2.350e-19
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:   34 FATFIQENPLHRKRTRAETIMGRLYYELGDYDKAIDMLRDQADPANDPQAALTMLRYLARAYSQKSEYEAAESAYLQAASFPGNYTVDEDFRSLGELYKIRADLA 348
            F  + ++NP H K  RAE++MGRL YE G Y +AI++LR+      DP + +  LR LARA ++  + EAA S YLQA    GNY+ D D+  LG LY+ RAD A
Sbjct:  434 FEQYRKDNPAHAKVARAESLMGRLNYESGRYQEAIELLRNPELRLRDPASTVPTLRTLARASAKMGDAEAARSYYLQAVGVQGNYSPDVDYAELGSLYQSRADKA 538
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123587.4828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7V2Y4R2_9BACT3.960e-2447.32Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A7Y5C520_9BACT2.350e-1946.67LysM peptidoglycan-binding domain-containing prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123587contigM-pyrifera_M_contig123587:108..503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.3529694-CDS-M-pyrifera_M_contig123587:107..5031622815754.3529694-CDS-M-pyrifera_M_contig123587:107..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123587 108..503 +
1692277553.71787-CDS-M-pyrifera_M_contig123587:107..5031692277553.71787-CDS-M-pyrifera_M_contig123587:107..503Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123587 108..503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123587.4828.1prot_M-pyrifera_M_contig123587.4828.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123587 108..503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123587.4828.1

>prot_M-pyrifera_M_contig123587.4828.1 ID=prot_M-pyrifera_M_contig123587.4828.1|Name=mRNA_M-pyrifera_M_contig123587.4828.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MRRRYTAAVVRFATFIQENPLHRKRTRAETIMGRLYYELGDYDKAIDMLR
DQADPANDPQAALTMLRYLARAYSQKSEYEAAESAYLQAASFPGNYTVDE
DFRSLGELYKIRADLATSDANRDAFMETAATY
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mRNA from alignment at M-pyrifera_M_contig123587:108..503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123587.4828.1 ID=mRNA_M-pyrifera_M_contig123587.4828.1|Name=mRNA_M-pyrifera_M_contig123587.4828.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig123587:108..503+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGTCGTTACACCGCCGCAGTAGTGCGGTTTGCTACGTTCATTCA
GGAAAACCCGTTGCATCGCAAACGGACTCGAGCGGAAACGATCATGGGTC
GGCTCTATTACGAGCTGGGCGACTATGATAAGGCCATTGATATGCTCCGG
GACCAGGCCGATCCCGCCAATGACCCCCAGGCGGCGTTGACCATGCTGCG
CTACCTGGCTCGGGCTTACAGTCAGAAGTCCGAGTATGAAGCGGCAGAGA
GTGCGTATCTTCAGGCTGCTTCTTTCCCGGGAAATTATACCGTGGATGAA
GATTTTCGAAGTCTCGGCGAGCTGTATAAAATCCGCGCCGATTTGGCTAC
TTCCGATGCGAATCGGGATGCCTTCATGGAAACCGCAGCAACCTAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123587:108..503+

>mRNA_M-pyrifera_M_contig123587.4828.1 ID=mRNA_M-pyrifera_M_contig123587.4828.1|Name=mRNA_M-pyrifera_M_contig123587.4828.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig123587:108..503+ (Macrocystis pyrifera P11B4 male)
ATGCGGCGTCGTTACACCGCCGCAGTAGTGCGGTTTGCTACGTTCATTCA
GGAAAACCCGTTGCATCGCAAACGGACTCGAGCGGAAACGATCATGGGTC
GGCTCTATTACGAGCTGGGCGACTATGATAAGGCCATTGATATGCTCCGG
GACCAGGCCGATCCCGCCAATGACCCCCAGGCGGCGTTGACCATGCTGCG
CTACCTGGCTCGGGCTTACAGTCAGAAGTCCGAGTATGAAGCGGCAGAGA
GTGCGTATCTTCAGGCTGCTTCTTTCCCGGGAAATTATACCGTGGATGAA
GATTTTCGAAGTCTCGGCGAGCTGTATAAAATCCGCGCCGATTTGGCTAC
TTCCGATGCGAATCGGGATGCCTTCATGGAAACCGCAGCAACCTATATGC
GGCGTCGTTACACCGCCGCAGTAGTGCGGTTTGCTACGTTCATTCAGGAA
AACCCGTTGCATCGCAAACGGACTCGAGCGGAAACGATCATGGGTCGGCT
CTATTACGAGCTGGGCGACTATGATAAGGCCATTGATATGCTCCGGGACC
AGGCCGATCCCGCCAATGACCCCCAGGCGGCGTTGACCATGCTGCGCTAC
CTGGCTCGGGCTTACAGTCAGAAGTCCGAGTATGAAGCGGCAGAGAGTGC
GTATCTTCAGGCTGCTTCTTTCCCGGGAAATTATACCGTGGATGAAGATT
TTCGAAGTCTCGGCGAGCTGTATAAAATCCGCGCCGATTTGGCTACTTCC
GATGCGAATCGGGATGCCTTCATGGAAACCGCAGCAACCTAT
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