mRNA_M-pyrifera_M_contig123585.4827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123585.4827.1
Unique NamemRNA_M-pyrifera_M_contig123585.4827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: A0A4W3HJL8_CALMI (N-glycanase_N domain-containing protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3HJL8_CALMI)

HSP 1 Score: 167 bits (424), Expect = 6.420e-46
Identity = 82/140 (58.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            PI F V   T +  L  VITGHG D  N C EFCVTSH FV N+    +  +TFDNAGTA GCA +   GV PNE+GTWLYGRNGWCDGQ+V PW  DVTDQ+ + G N +LY G FEG  PDP  +PGY+I++SYL F+
Sbjct:  569 PIKFVVPSLTKKVELYVVITGHGSD-ENGCGEFCVTSHYFVINSKINNS--KTFDNAGTAFGCADKVLEGVVPNEHGTWLYGRNGWCDGQDVAPWRTDVTDQVNLGGINDILYFGLFEGKDPDPKQNPGYIILYSYLIFY 705          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: UPI001C3FDA14 (uncharacterized protein si:dkey-256h2.1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FDA14)

HSP 1 Score: 167 bits (424), Expect = 1.190e-45
Identity = 82/140 (58.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            PI F V   T +  L  VITGHG D  N C EFCVTSH FV N+    +  +TFDNAGTA GCA +   GV PNE+GTWLYGRNGWCDGQ+V PW  DVTDQ+ + G N +LY G FEG  PDP  +PGY+I++SYL F+
Sbjct:  670 PIKFVVPSLTKKVELYVVITGHGSD-ENGCGEFCVTSHYFVINSKINNS--KTFDNAGTAFGCADKVLEGVVPNEHGTWLYGRNGWCDGQDVAPWRTDVTDQVNLGGINDILYFGLFEGKDPDPKQNPGYIILYSYLIFY 806          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: A0A401PI38_SCYTO (Uncharacterized protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401PI38_SCYTO)

HSP 1 Score: 155 bits (393), Expect = 2.960e-45
Identity = 74/140 (52.86%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            P+ F+V   T +    AVITGHG D  N C EFCVTSH F+ N     +  R FDNAGT  GCA +   GV PNE+GTWLYGRNGWCDGQ+V PW  DVT+Q+ + G N ++Y G+F G  P+P  +PG + M+SYL F+
Sbjct:   80 PLTFSVPSSTKKVEFYAVITGHGSD-ENGCGEFCVTSHHFLINGIYNNS--RIFDNAGTPFGCANKVLEGVVPNEHGTWLYGRNGWCDGQDVAPWRKDVTEQMNMTGINSIVYFGWFNGKDPNPQRNPGEITMYSYLVFY 216          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: A0A8B7Y9Y2_ACAPL (uncharacterized protein LOC110978103 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y9Y2_ACAPL)

HSP 1 Score: 164 bits (414), Expect = 1.710e-44
Identity = 78/139 (56.12%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQLVAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            P+ FTV     +  + AVITGHG D  N C EFCVTSH FV N         TF NAGT  GCA R   GVEPNE+GTWLYGR+GWCDG+EV PW +DVT Q+ +G N + Y G+FEG  P+P  +PGY+IM+SYL F+
Sbjct:  577 PLFFTVPSDVKKVQVFAVITGHGSD-NNGCGEFCVTSHHFVINGHHHNI---TFSNAGTELGCAMRTPTGVEPNEHGTWLYGRDGWCDGREVDPWVFDVTAQVTSGQNNITYFGWFEGKDPNPTGTPGYIIMYSYLVFY 711          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: S4RX00_PETMA (N-glycanase_N domain-containing protein n=2 Tax=Petromyzon marinus TaxID=7757 RepID=S4RX00_PETMA)

HSP 1 Score: 154 bits (390), Expect = 4.670e-44
Identity = 78/145 (53.79%), Postives = 94/145 (64.83%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQLV-----AGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFFS 420
            P+LF++   T +  L AVITGHG D   C  EFCVTSH FV N   T ++  TF+NAGT  GCA R   GV PNE+GTWLYGRNGWCDGQEV PW  D+T Q       A +N V Y G+F GS P+P  +PG + M S+L F+S
Sbjct:  138 PVLFSIPPATVKVELYAVITGHGSDEHGC-GEFCVTSHHFVVNRRFTNSI--TFNNAGTPLGCAERVTTGVVPNEHGTWLYGRNGWCDGQEVEPWRVDITSQARTQVERAASNTVAYYGWFNGSDPNPKQNPGEITMSSFLVFYS 279          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: A0A2G8L5H6_STIJA (N-glycanase_N domain-containing protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8L5H6_STIJA)

HSP 1 Score: 161 bits (408), Expect = 4.740e-44
Identity = 78/140 (55.71%), Postives = 100/140 (71.43%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQLVAGTNQ-VLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            PI FT+     +  + A+ITGHG D  N C EFCVTSH FV   D +   V TF+NAGT  GCA R+ +GVEPNE+GTWLYGR+GWCDG+EV PW +DVTD L +G++  V Y G+F G+ PDP++ PG +IM+SYL F+
Sbjct:  441 PINFTIPSDVKQVKIAAIITGHGSD-ENGCGEFCVTSHHFVV--DGSHPNVETFNNAGTPLGCAERSPLGVEPNEHGTWLYGRDGWCDGREVDPWVFDVTDDLNSGSSHSVTYFGWFNGTDPDPVSIPGEIIMYSYLVFY 577          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: UPI0015AE5543 (uncharacterized protein si:dkey-256h2.1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AE5543)

HSP 1 Score: 161 bits (407), Expect = 1.320e-43
Identity = 77/140 (55.00%), Postives = 99/140 (70.71%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            PI FTV   T +  + AVITGHG D  N C EFCVTSH F+ N  +  +  R FD+AGTA GCA RA  G  PNE+GTWLYGR GWCDG +V PW  D++DQL ++G+N +LY G +EG  P+P ++PGY++M+SYL F+
Sbjct:  545 PIKFTVPASTKKVEIYAVITGHGSD-ENGCGEFCVTSHHFLINGLSNNS--RIFDSAGTALGCAARAGEGAVPNEHGTWLYGRGGWCDGLQVNPWRIDISDQLYMSGSNTILYFGLYEGRDPNPTSNPGYIVMYSYLVFY 681          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: UPI0018D8CE0F (uncharacterized protein LOC119729686 isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8CE0F)

HSP 1 Score: 161 bits (407), Expect = 1.550e-43
Identity = 78/139 (56.12%), Postives = 93/139 (66.91%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQLVAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            P  FTV     +  + A ITGHG D  N C EFCVTSH FV N         TF NAGTA GCA R   GVEPNE+GTWLYGR+GWCDG+EV PW ++VT QL +G N + Y G+FEG  P+P  +PGY+IM+SYL F+
Sbjct:  569 PHFFTVPADVKKVQVYAAITGHGSD-NNGCGEFCVTSHHFVVNGHYNNI---TFSNAGTALGCALRTPTGVEPNEHGTWLYGRDGWCDGREVDPWVFNVTAQLTSGQNNITYFGWFEGKDPNPTENPGYIIMYSYLVFY 703          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: UPI001BB13E66 (uncharacterized protein LOC121412139 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB13E66)

HSP 1 Score: 161 bits (408), Expect = 1.680e-43
Identity = 79/141 (56.03%), Postives = 97/141 (68.79%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFFS 420
            PI FTV     + +L AVITGHG D  N C EFCVTSH F+ N       V TF NAGT  GCA R+  GVEPNE+GTWLYGR+GWCDG+EV PW  DVT Q+ + G+N + Y G+F G+ P+P A+PG +IM+SYL  +S
Sbjct:  639 PINFTVPQTAKKVILYAVITGHGSD-NNGCGEFCVTSHHFIVNGHPN---VNTFTNAGTPNGCAERSITGVEPNEHGTWLYGRDGWCDGREVDPWVVDVTSQINMEGSNSIKYFGWFNGTDPNPTANPGVIIMYSYLVVYS 775          
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Match: UPI001B7E83AF (uncharacterized protein si:dkey-256h2.1 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E83AF)

HSP 1 Score: 160 bits (404), Expect = 4.110e-43
Identity = 77/140 (55.00%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEALVRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVTDQL-VAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFF 417
            PI F V   T +  L AVITGHG D  N C EFC+TSH FV N     +  RTF+NAGT  GCA +   GV PNE+GTWLYGRNGWCDGQ+V PW  DVT+Q+ + G N ++Y G+F G  PDP  +PG + M+SYL F+
Sbjct:  568 PIRFVVPSSTKKVELYAVITGHGSD-ENGCGEFCITSHHFVINGIYNNS--RTFNNAGTPLGCANKVLEGVVPNEHGTWLYGRNGWCDGQDVAPWRKDVTEQVNMTGINSIVYFGWFNGKDPDPKQNPGEITMYSYLVFY 704          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123585.4827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4W3HJL8_CALMI6.420e-4658.57N-glycanase_N domain-containing protein n=2 Tax=Ca... [more]
UPI001C3FDA141.190e-4558.57uncharacterized protein si:dkey-256h2.1 n=1 Tax=Ca... [more]
A0A401PI38_SCYTO2.960e-4552.86Uncharacterized protein (Fragment) n=1 Tax=Scylior... [more]
A0A8B7Y9Y2_ACAPL1.710e-4456.12uncharacterized protein LOC110978103 n=1 Tax=Acant... [more]
S4RX00_PETMA4.670e-4453.79N-glycanase_N domain-containing protein n=2 Tax=Pe... [more]
A0A2G8L5H6_STIJA4.740e-4455.71N-glycanase_N domain-containing protein n=1 Tax=St... [more]
UPI0015AE55431.320e-4355.00uncharacterized protein si:dkey-256h2.1 n=1 Tax=An... [more]
UPI0018D8CE0F1.550e-4356.12uncharacterized protein LOC119729686 isoform X1 n=... [more]
UPI001BB13E661.680e-4356.03uncharacterized protein LOC121412139 n=1 Tax=Lytec... [more]
UPI001B7E83AF4.110e-4355.00uncharacterized protein si:dkey-256h2.1 n=1 Tax=Ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123585contigM-pyrifera_M_contig123585:3..425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score159.1
Seed ortholog evalue1.5e-36
Seed eggNOG ortholog10228.TriadP37261
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptide-N-glycosidase F, C terminal
EggNOG OGs28MF2@1,2QTYJ@2759,39PP2@33154,3BKXU@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815754.3087034-CDS-M-pyrifera_M_contig123585:2..4251622815754.3087034-CDS-M-pyrifera_M_contig123585:2..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123585 3..425 +
1692277553.7004244-CDS-M-pyrifera_M_contig123585:2..4251692277553.7004244-CDS-M-pyrifera_M_contig123585:2..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123585 3..425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123585.4827.1prot_M-pyrifera_M_contig123585.4827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123585 3..425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123585.4827.1

>prot_M-pyrifera_M_contig123585.4827.1 ID=prot_M-pyrifera_M_contig123585.4827.1|Name=mRNA_M-pyrifera_M_contig123585.4827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
PILFTVAGGTSRAVLVAVITGHGCDVPNCCAEFCVTSHEFVFNNDTTEAL
VRTFDNAGTAEGCARRAFMGVEPNEYGTWLYGRNGWCDGQEVIPWEWDVT
DQLVAGTNQVLYQGYFEGSTPDPIASPGYMIMHSYLTFFS*
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mRNA from alignment at M-pyrifera_M_contig123585:3..425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123585.4827.1 ID=mRNA_M-pyrifera_M_contig123585.4827.1|Name=mRNA_M-pyrifera_M_contig123585.4827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig123585:3..425+ (Macrocystis pyrifera P11B4 male)
CCCATTCTCTTCACCGTGGCAGGGGGCACTAGCAGGGCAGTGTTGGTGGC AGTCATCACAGGCCATGGCTGCGACGTACCCAACTGTTGCGCAGAGTTCT GTGTCACTTCTCATGAGTTTGTCTTCAACAATGATACCACCGAGGCACTC GTCCGCACCTTCGACAACGCAGGCACCGCCGAGGGCTGTGCCAGGAGGGC GTTCATGGGTGTGGAGCCAAACGAATACGGCACTTGGCTGTACGGGAGGA ACGGCTGGTGCGACGGCCAAGAGGTAATTCCCTGGGAATGGGATGTGACA GACCAACTGGTGGCCGGCACCAACCAAGTGCTCTACCAGGGATACTTTGA GGGTAGCACTCCAGACCCCATCGCTAGCCCTGGTTACATGATCATGCACT CCTACCTCACCTTCTTTTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123585:3..425+

>mRNA_M-pyrifera_M_contig123585.4827.1 ID=mRNA_M-pyrifera_M_contig123585.4827.1|Name=mRNA_M-pyrifera_M_contig123585.4827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig123585:3..425+ (Macrocystis pyrifera P11B4 male)
CCCATTCTCTTCACCGTGGCAGGGGGCACTAGCAGGGCAGTGTTGGTGGC
AGTCATCACAGGCCATGGCTGCGACGTACCCAACTGTTGCGCAGAGTTCT
GTGTCACTTCTCATGAGTTTGTCTTCAACAATGATACCACCGAGGCACTC
GTCCGCACCTTCGACAACGCAGGCACCGCCGAGGGCTGTGCCAGGAGGGC
GTTCATGGGTGTGGAGCCAAACGAATACGGCACTTGGCTGTACGGGAGGA
ACGGCTGGTGCGACGGCCAAGAGGTAATTCCCTGGGAATGGGATGTGACA
GACCAACTGGTGGCCGGCACCAACCAAGTGCTCTACCAGGGATACTTTGA
GGGTAGCACTCCAGACCCCATCGCTAGCCCTGGTTACATGATCATGCACT
CCTACCTCACCTTCTTTTCGTGACCCATTCTCTTCACCGTGGCAGGGGGC
ACTAGCAGGGCAGTGTTGGTGGCAGTCATCACAGGCCATGGCTGCGACGT
ACCCAACTGTTGCGCAGAGTTCTGTGTCACTTCTCATGAGTTTGTCTTCA
ACAATGATACCACCGAGGCACTCGTCCGCACCTTCGACAACGCAGGCACC
GCCGAGGGCTGTGCCAGGAGGGCGTTCATGGGTGTGGAGCCAAACGAATA
CGGCACTTGGCTGTACGGGAGGAACGGCTGGTGCGACGGCCAAGAGGTAA
TTCCCTGGGAATGGGATGTGACAGACCAACTGGTGGCCGGCACCAACCAA
GTGCTCTACCAGGGATACTTTGAGGGTAGCACTCCAGACCCCATCGCTAG
CCCTGGTTACATGATCATGCACTCCTACCTCACCTTCTTTTCGTGA
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