mRNA_M-pyrifera_M_contig123542.4814.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123542.4814.1
Unique NamemRNA_M-pyrifera_M_contig123542.4814.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123542.4814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123542contigM-pyrifera_M_contig123542:50..412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.8232307-UTR-M-pyrifera_M_contig123542:49..611622815753.8232307-UTR-M-pyrifera_M_contig123542:49..61Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123542 50..61 +
1692277553.4813998-UTR-M-pyrifera_M_contig123542:49..611692277553.4813998-UTR-M-pyrifera_M_contig123542:49..61Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123542 50..61 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815753.835549-CDS-M-pyrifera_M_contig123542:61..4121622815753.835549-CDS-M-pyrifera_M_contig123542:61..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123542 62..412 +
1692277553.5039084-CDS-M-pyrifera_M_contig123542:61..4121692277553.5039084-CDS-M-pyrifera_M_contig123542:61..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123542 62..412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123542.4814.1prot_M-pyrifera_M_contig123542.4814.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123542 62..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123542.4814.1

>prot_M-pyrifera_M_contig123542.4814.1 ID=prot_M-pyrifera_M_contig123542.4814.1|Name=mRNA_M-pyrifera_M_contig123542.4814.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MLSFKADHEDDTLRAGLWLKELSKRELLFFLFLKSWVGHVQAQAGANFGE
VHWCSLKGYRVLIPAFVHAMRAQEAMSRTQVDCAKAVLLTDPAIINFFVN
LVFSRTSVHNINRTMCT
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mRNA from alignment at M-pyrifera_M_contig123542:50..412+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123542.4814.1 ID=mRNA_M-pyrifera_M_contig123542.4814.1|Name=mRNA_M-pyrifera_M_contig123542.4814.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig123542:50..412+ (Macrocystis pyrifera P11B4 male)
TACCACTGTGTGATGCTGTCGTTCAAGGCGGACCACGAGGACGACACCTT
GCGCGCGGGCCTGTGGCTGAAGGAGCTGAGCAAGCGCGAGCTGCTCTTCT
TCCTCTTCCTCAAGAGCTGGGTGGGCCACGTGCAGGCGCAGGCGGGCGCC
AACTTCGGCGAAGTGCACTGGTGCTCTCTCAAGGGCTACCGCGTCCTCAT
CCCCGCGTTCGTGCACGCCATGCGCGCCCAGGAGGCCATGTCGCGCACCC
AGGTCGACTGCGCCAAGGCAGTGCTCCTCACCGACCCCGCCATCATCAAC
TTCTTCGTCAACCTCGTCTTCAGCAGGACCAGCGTACACAACATCAACCG
CACCATGTGTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123542:50..412+

>mRNA_M-pyrifera_M_contig123542.4814.1 ID=mRNA_M-pyrifera_M_contig123542.4814.1|Name=mRNA_M-pyrifera_M_contig123542.4814.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig123542:50..412+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCGTTCAAGGCGGACCACGAGGACGACACCTTGCGCGCGGGCCT
GTGGCTGAAGGAGCTGAGCAAGCGCGAGCTGCTCTTCTTCCTCTTCCTCA
AGAGCTGGGTGGGCCACGTGCAGGCGCAGGCGGGCGCCAACTTCGGCGAA
GTGCACTGGTGCTCTCTCAAGGGCTACCGCGTCCTCATCCCCGCGTTCGT
GCACGCCATGCGCGCCCAGGAGGCCATGTCGCGCACCCAGGTCGACTGCG
CCAAGGCAGTGCTCCTCACCGACCCCGCCATCATCAACTTCTTCGTCAAC
CTCGTCTTCAGCAGGACCAGCGTACACAACATCAACCGCACCATGTGTAC
GATGCTGTCGTTCAAGGCGGACCACGAGGACGACACCTTGCGCGCGGGCC
TGTGGCTGAAGGAGCTGAGCAAGCGCGAGCTGCTCTTCTTCCTCTTCCTC
AAGAGCTGGGTGGGCCACGTGCAGGCGCAGGCGGGCGCCAACTTCGGCGA
AGTGCACTGGTGCTCTCTCAAGGGCTACCGCGTCCTCATCCCCGCGTTCG
TGCACGCCATGCGCGCCCAGGAGGCCATGTCGCGCACCCAGGTCGACTGC
GCCAAGGCAGTGCTCCTCACCGACCCCGCCATCATCAACTTCTTCGTCAA
CCTCGTCTTCAGCAGGACCAGCGTACACAACATCAACCGCACCATGTGTA
CG
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