mRNA_M-pyrifera_M_contig12326.4775.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12326.4775.1
Unique NamemRNA_M-pyrifera_M_contig12326.4775.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12326.4775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12326contigM-pyrifera_M_contig12326:77..473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.7356753-UTR-M-pyrifera_M_contig12326:76..1101622815751.7356753-UTR-M-pyrifera_M_contig12326:76..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12326 77..110 +
1692277552.465539-UTR-M-pyrifera_M_contig12326:76..1101692277552.465539-UTR-M-pyrifera_M_contig12326:76..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12326 77..110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.7459662-CDS-M-pyrifera_M_contig12326:110..4731622815751.7459662-CDS-M-pyrifera_M_contig12326:110..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12326 111..473 +
1692277552.4738805-CDS-M-pyrifera_M_contig12326:110..4731692277552.4738805-CDS-M-pyrifera_M_contig12326:110..473Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12326 111..473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12326.4775.1prot_M-pyrifera_M_contig12326.4775.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12326 111..473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12326.4775.1

>prot_M-pyrifera_M_contig12326.4775.1 ID=prot_M-pyrifera_M_contig12326.4775.1|Name=mRNA_M-pyrifera_M_contig12326.4775.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MRRSCSGRRRQPCLCDAETLDLFREDRLPPRTFVPHREPKITVSPGGMMV
ARPKSASSSVSCGMAADTKSMKFTSTETAVSRIDKRGAGKEGSGKAKCGA
EVPWTVVTECNAPFIGKKKT*
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mRNA from alignment at M-pyrifera_M_contig12326:77..473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12326.4775.1 ID=mRNA_M-pyrifera_M_contig12326.4775.1|Name=mRNA_M-pyrifera_M_contig12326.4775.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=397bp|location=Sequence derived from alignment at M-pyrifera_M_contig12326:77..473+ (Macrocystis pyrifera P11B4 male)
AGGGTTATTTGTCTCCTGCAACAAGACGTAGATTATGAGGAGGTCGTGCT
CTGGAAGACGACGTCAACCCTGCCTATGTGACGCTGAAACGCTCGACCTG
TTCAGGGAGGATAGGCTGCCACCACGCACCTTTGTGCCGCATCGAGAGCC
GAAGATCACCGTCTCCCCCGGTGGGATGATGGTGGCAAGGCCGAAGTCGG
CCAGCAGTAGCGTCTCATGCGGGATGGCTGCAGACACTAAATCAATGAAG
TTTACGTCGACAGAAACCGCCGTTTCACGGATCGACAAGAGAGGGGCGGG
GAAGGAGGGATCAGGGAAGGCTAAATGCGGCGCGGAAGTCCCATGGACCG
TAGTAACAGAGTGTAATGCACCATTTATTGGGAAAAAAAAAACTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12326:77..473+

>mRNA_M-pyrifera_M_contig12326.4775.1 ID=mRNA_M-pyrifera_M_contig12326.4775.1|Name=mRNA_M-pyrifera_M_contig12326.4775.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig12326:77..473+ (Macrocystis pyrifera P11B4 male)
ATGAGGAGGTCGTGCTCTGGAAGACGACGTCAACCCTGCCTATGTGACGC
TGAAACGCTCGACCTGTTCAGGGAGGATAGGCTGCCACCACGCACCTTTG
TGCCGCATCGAGAGCCGAAGATCACCGTCTCCCCCGGTGGGATGATGGTG
GCAAGGCCGAAGTCGGCCAGCAGTAGCGTCTCATGCGGGATGGCTGCAGA
CACTAAATCAATGAAGTTTACGTCGACAGAAACCGCCGTTTCACGGATCG
ACAAGAGAGGGGCGGGGAAGGAGGGATCAGGGAAGGCTAAATGCGGCGCG
GAAGTCCCATGGACCGTAGTAACAGAGTGTAATGCACCATTTATTGGGAA
AAAAAAAACTTGAATGAGGAGGTCGTGCTCTGGAAGACGACGTCAACCCT
GCCTATGTGACGCTGAAACGCTCGACCTGTTCAGGGAGGATAGGCTGCCA
CCACGCACCTTTGTGCCGCATCGAGAGCCGAAGATCACCGTCTCCCCCGG
TGGGATGATGGTGGCAAGGCCGAAGTCGGCCAGCAGTAGCGTCTCATGCG
GGATGGCTGCAGACACTAAATCAATGAAGTTTACGTCGACAGAAACCGCC
GTTTCACGGATCGACAAGAGAGGGGCGGGGAAGGAGGGATCAGGGAAGGC
TAAATGCGGCGCGGAAGTCCCATGGACCGTAGTAACAGAGTGTAATGCAC
CATTTATTGGGAAAAAAAAAACTTGA
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