mRNA_M-pyrifera_M_contig123234.4769.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123234.4769.1
Unique NamemRNA_M-pyrifera_M_contig123234.4769.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123234.4769.1 vs. uniprot
Match: A0A2E7KAR7_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAR7_9PLAN)

HSP 1 Score: 349 bits (896), Expect = 2.010e-120
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1 
Query:    1 IMSLGAVRRSVYDREDDVSPTEAEEAFVRQADEATRIVERALETTQSSPSASAGILRIIYHRFMLLFNETDSEFCDSVMDDIEKICAYSVIEMWDDQTLVAPQIFKRDLPKFSDHKSGIEKFFGFIDSAISSRWFYGCFFIVLAYFSQRAIESKPRDIVWYGITAFNLFWVTLGI 525
            IMSLGAVRRSVYDREDDVSPTEAEEAFVRQADEATRIVERALETTQSSPSASAGILRIIYHRFMLLFNETDSEFCDSVMDDIEKICAYSVIEMWDDQTLVAPQIFKRDLPKFSDHKSGIEKFFGFIDSAISSRWFYGCFFIVLAYFSQRAIESKPRDIVWYGITAFNLFWVTLGI
Sbjct:   28 IMSLGAVRRSVYDREDDVSPTEAEEAFVRQADEATRIVERALETTQSSPSASAGILRIIYHRFMLLFNETDSEFCDSVMDDIEKICAYSVIEMWDDQTLVAPQIFKRDLPKFSDHKSGIEKFFGFIDSAISSRWFYGCFFIVLAYFSQRAIESKPRDIVWYGITAFNLFWVTLGI 202
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123234.4769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KAR7_9PLAN2.010e-120100.00Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123234contigM-pyrifera_M_contig123234:1..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.5080884-UTR-M-pyrifera_M_contig123234:0..31622815751.5080884-UTR-M-pyrifera_M_contig123234:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123234 1..3 +
1692277552.3796427-UTR-M-pyrifera_M_contig123234:0..31692277552.3796427-UTR-M-pyrifera_M_contig123234:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123234 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815751.5201015-CDS-M-pyrifera_M_contig123234:3..5251622815751.5201015-CDS-M-pyrifera_M_contig123234:3..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123234 4..525 +
1692277552.3881261-CDS-M-pyrifera_M_contig123234:3..5251692277552.3881261-CDS-M-pyrifera_M_contig123234:3..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123234 4..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123234.4769.1prot_M-pyrifera_M_contig123234.4769.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123234 4..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123234.4769.1

>prot_M-pyrifera_M_contig123234.4769.1 ID=prot_M-pyrifera_M_contig123234.4769.1|Name=mRNA_M-pyrifera_M_contig123234.4769.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=174bp
MSLGAVRRSVYDREDDVSPTEAEEAFVRQADEATRIVERALETTQSSPSA
SAGILRIIYHRFMLLFNETDSEFCDSVMDDIEKICAYSVIEMWDDQTLVA
PQIFKRDLPKFSDHKSGIEKFFGFIDSAISSRWFYGCFFIVLAYFSQRAI
ESKPRDIVWYGITAFNLFWVTLGI
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mRNA from alignment at M-pyrifera_M_contig123234:1..525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123234.4769.1 ID=mRNA_M-pyrifera_M_contig123234.4769.1|Name=mRNA_M-pyrifera_M_contig123234.4769.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig123234:1..525+ (Macrocystis pyrifera P11B4 male)
ATTATGTCACTGGGAGCGGTGAGACGTTCGGTTTATGATCGGGAAGATGA
TGTCAGTCCGACAGAGGCAGAAGAAGCTTTTGTGCGTCAGGCCGACGAAG
CAACCCGAATCGTGGAACGGGCCCTCGAAACTACTCAGTCATCCCCGTCT
GCGTCTGCAGGTATTCTGCGTATCATCTATCATCGCTTTATGTTGCTGTT
TAATGAGACCGACAGTGAGTTCTGTGATTCCGTGATGGATGATATTGAAA
AGATCTGTGCCTATTCAGTAATCGAAATGTGGGATGACCAGACCCTGGTC
GCGCCGCAAATCTTTAAACGAGATCTGCCAAAATTCAGTGATCACAAAAG
CGGGATTGAAAAATTCTTCGGATTCATCGATTCCGCGATTTCCTCTCGCT
GGTTTTATGGATGTTTCTTTATTGTGCTGGCTTACTTCTCACAAAGAGCC
ATTGAATCTAAACCAAGAGATATTGTCTGGTATGGAATCACAGCGTTTAA
TCTCTTCTGGGTCACTCTGGGAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123234:1..525+

>mRNA_M-pyrifera_M_contig123234.4769.1 ID=mRNA_M-pyrifera_M_contig123234.4769.1|Name=mRNA_M-pyrifera_M_contig123234.4769.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1044bp|location=Sequence derived from alignment at M-pyrifera_M_contig123234:1..525+ (Macrocystis pyrifera P11B4 male)
ATGTCACTGGGAGCGGTGAGACGTTCGGTTTATGATCGGGAAGATGATGT
CAGTCCGACAGAGGCAGAAGAAGCTTTTGTGCGTCAGGCCGACGAAGCAA
CCCGAATCGTGGAACGGGCCCTCGAAACTACTCAGTCATCCCCGTCTGCG
TCTGCAGGTATTCTGCGTATCATCTATCATCGCTTTATGTTGCTGTTTAA
TGAGACCGACAGTGAGTTCTGTGATTCCGTGATGGATGATATTGAAAAGA
TCTGTGCCTATTCAGTAATCGAAATGTGGGATGACCAGACCCTGGTCGCG
CCGCAAATCTTTAAACGAGATCTGCCAAAATTCAGTGATCACAAAAGCGG
GATTGAAAAATTCTTCGGATTCATCGATTCCGCGATTTCCTCTCGCTGGT
TTTATGGATGTTTCTTTATTGTGCTGGCTTACTTCTCACAAAGAGCCATT
GAATCTAAACCAAGAGATATTGTCTGGTATGGAATCACAGCGTTTAATCT
CTTCTGGGTCACTCTGGGAATCATGTCACTGGGAGCGGTGAGACGTTCGG
TTTATGATCGGGAAGATGATGTCAGTCCGACAGAGGCAGAAGAAGCTTTT
GTGCGTCAGGCCGACGAAGCAACCCGAATCGTGGAACGGGCCCTCGAAAC
TACTCAGTCATCCCCGTCTGCGTCTGCAGGTATTCTGCGTATCATCTATC
ATCGCTTTATGTTGCTGTTTAATGAGACCGACAGTGAGTTCTGTGATTCC
GTGATGGATGATATTGAAAAGATCTGTGCCTATTCAGTAATCGAAATGTG
GGATGACCAGACCCTGGTCGCGCCGCAAATCTTTAAACGAGATCTGCCAA
AATTCAGTGATCACAAAAGCGGGATTGAAAAATTCTTCGGATTCATCGAT
TCCGCGATTTCCTCTCGCTGGTTTTATGGATGTTTCTTTATTGTGCTGGC
TTACTTCTCACAAAGAGCCATTGAATCTAAACCAAGAGATATTGTCTGGT
ATGGAATCACAGCGTTTAATCTCTTCTGGGTCACTCTGGGAATC
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