mRNA_M-pyrifera_M_contig123184.4759.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123184.4759.1
Unique NamemRNA_M-pyrifera_M_contig123184.4759.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: UPI0019933228 (DUF885 domain-containing protein n=1 Tax=Thermoanaerobaculia bacterium TaxID=2651171 RepID=UPI0019933228)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-10
Identity = 40/114 (35.09%), Postives = 59/114 (51.75%), Query Frame = 1
Query:   28 WEYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADYL 369
            WE+ ++ +P  ST +GD RY+ +L D S      RK   RD  A L  IDR  L  +DQL+YDL +R+L + +  + F  +   +N + G    F  L+   P  + K   DYL
Sbjct:   38 WEWGLEEFPERSTYLGDRRYNDRLTDISTEAIERRKARERDTLARLNAIDRASLSAEDQLSYDLYKRRLEMSIAGDRFPTELDPINQQSGIHQDFAILSTVTPFRSVKDYRDYL 151          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: A0A0B6WZR5_9BACT (Uncharacterized protein n=1 Tax=Pyrinomonas methylaliphatogenes TaxID=454194 RepID=A0A0B6WZR5_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.720e-7
Identity = 36/100 (36.00%), Postives = 53/100 (53.00%), Query Frame = 1
Query:    4 LAALCSELWEYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQ 303
            L AL    W+YQM+  P  ++ +GD R++ +  D S    R R E  ++  A LA IDR  L PQDQL YDL +++   ++E   +      +N R G Q
Sbjct:   31 LHALFDAEWDYQMEQDPVRASLLGDRRWNDRWRDVSLDAIRKRHEHYKEVLARLAQIDRRQLSPQDQLNYDLFKKQYETEVEGFKYQWYLIPLNQRNGIQ 130          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: A0A4Q9BE67_9BACT (DUF885 domain-containing protein n=3 Tax=Aquirufa TaxID=2676247 RepID=A0A4Q9BE67_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 7.800e-7
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    1 ELAALCSELWEYQMKTYPTWSTQMGDGRYDGKL---FDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADY 366
            ELA +  + +E Q+K  P  +T  GD RY+ +L   F +S R   + K  L  +Q  L+ + RDDL   DQ+TYDL+ R +++ LE   +  +   +N   G  + F  L + Q +   K   DY
Sbjct:   25 ELAKIVGDYYEEQLKLNPGAATANGDNRYNDQLNIDFTDSHRA--LVKSVLEKYQNSLSALHRDDLNANDQITYDLLTRDIKLGLEGLTYPDNLTPLNQFYGFHLTFAQLGSGQVMQPFKTVKDY 147          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: B9XJ06_PEDPL (Uncharacterized protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XJ06_PEDPL)

HSP 1 Score: 54.3 bits (129), Expect = 5.040e-6
Identity = 36/114 (31.58%), Postives = 54/114 (47.37%), Query Frame = 1
Query:   28 WEYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADYL 369
            WEY M  YP W+T +G    + +  DNS +    RK+ L+     L  IDR  L   +QL YDL++ +++ ++E   F  +   +N  GG Q     L    P  T K   + L
Sbjct:   54 WEYLMHEYPEWATYVGYPGQNDRWTDNSLKAIEHRKKLLQIPLKALQSIDRTKLDQANQLNYDLLKERIKHEIEGTRFKGEYLAINQLGGVQQDVPQLLEVMPRKTVKDYENIL 167          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: UPI001CC1B614 (DUF885 domain-containing protein n=1 Tax=Kangiella taiwanensis TaxID=1079179 RepID=UPI001CC1B614)

HSP 1 Score: 53.5 bits (127), Expect = 9.330e-6
Identity = 33/113 (29.20%), Postives = 56/113 (49.56%), Query Frame = 1
Query:   31 EYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADYL 369
            EY+M   P W+ + GD    GKL D S +  + RK  L +   +L  I R++L+  +Q++YD++  +L+ D+    F   E  + +  G   +  +LA      T +   DYL
Sbjct:   39 EYRMSQNPVWAARQGDESAKGKLRDVSPQAYQRRKAKLLELINELESIKRENLLADEQISYDMMMTQLKQDVAEIDFKTYEMPLTSEYGFHAQTTNLANSFRFRTTQDYRDYL 151          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: A0A4R6IVG1_9BACT (Uncharacterized protein (DUF885 family) n=1 Tax=Sediminibacterium goheungense TaxID=1086393 RepID=A0A4R6IVG1_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.730e-5
Identity = 39/126 (30.95%), Postives = 63/126 (50.00%), Query Frame = 1
Query:    1 ELAALCSELWEYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQAD----LADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADY 366
            ELAAL    +E +++ YP  +T  GD RY+ +L  +     R R   LR F  +    L   DR++L   DQL+YD+++R+L V++E   F  +   +N      + F+ + + Q     K   DY
Sbjct:   31 ELAALLDNYYEERLQFYPIEATINGDERYNDRLLIDFTDEHRSR---LRSFYKNQLTYLTRFDRENLNANDQLSYDVLKRELEVNIEALGFKDNYMPLNQFSSTHLVFMQMGSGQVYQPFKTVQDY 153          
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Match: A0A2E9XV81_9RICK (DUF885 domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E9XV81_9RICK)

HSP 1 Score: 52.0 bits (123), Expect = 3.220e-5
Identity = 32/113 (28.32%), Postives = 54/113 (47.79%), Query Frame = 1
Query:   31 EYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRDFQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGPQVRFLSLAADQPVLTPKQRADYL 369
            EY+M   P W+ + GD    GKL D S +  + RK  L +   +L  I RD+L+  +Q++YD++  +L+ D+    F   E  + +  G   +   L       T +   DY+
Sbjct:   41 EYRMSQNPVWAARQGDESAKGKLRDESPQAYQKRKAKLLELINELESIKRDNLLEDEQISYDMMMTQLQQDVAEIDFKTYEMPLTSEYGFHAQTTYLMNSFRFRTAEDYKDYI 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123184.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00199332282.370e-1035.09DUF885 domain-containing protein n=1 Tax=Thermoana... [more]
A0A0B6WZR5_9BACT5.720e-736.00Uncharacterized protein n=1 Tax=Pyrinomonas methyl... [more]
A0A4Q9BE67_9BACT7.800e-732.80DUF885 domain-containing protein n=3 Tax=Aquirufa ... [more]
B9XJ06_PEDPL5.040e-631.58Uncharacterized protein n=1 Tax=Pedosphaera parvul... [more]
UPI001CC1B6149.330e-629.20DUF885 domain-containing protein n=1 Tax=Kangiella... [more]
A0A4R6IVG1_9BACT1.730e-530.95Uncharacterized protein (DUF885 family) n=1 Tax=Se... [more]
A0A2E9XV81_9RICK3.220e-528.32DUF885 domain-containing protein n=2 Tax=Proteobac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123184contigM-pyrifera_M_contig123184:157..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog378806.STAUR_2088
KEGG koko:K01322
KEGG Pathwayko04614,map04614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bacterial protein of unknown function (DUF885)
EggNOG OGs1MUBX@1224,2X6QY@28221,2YU79@29,43BBS@68525,COG4805@1,COG4805@2
EC3.4.21.26
COG Functional cat.S
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.9485676-CDS-M-pyrifera_M_contig123184:156..5251622815750.9485676-CDS-M-pyrifera_M_contig123184:156..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123184 157..525 +
1692277552.098559-CDS-M-pyrifera_M_contig123184:156..5251692277552.098559-CDS-M-pyrifera_M_contig123184:156..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123184 157..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123184.4759.1prot_M-pyrifera_M_contig123184.4759.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123184 157..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123184.4759.1

>prot_M-pyrifera_M_contig123184.4759.1 ID=prot_M-pyrifera_M_contig123184.4759.1|Name=mRNA_M-pyrifera_M_contig123184.4759.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
ELAALCSELWEYQMKTYPTWSTQMGDGRYDGKLFDNSARGERMRKEALRD
FQADLADIDRDDLVPQDQLTYDLVRRKLRVDLEREAFALDEWNVNARGGP
QVRFLSLAADQPVLTPKQRADYL
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mRNA from alignment at M-pyrifera_M_contig123184:157..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123184.4759.1 ID=mRNA_M-pyrifera_M_contig123184.4759.1|Name=mRNA_M-pyrifera_M_contig123184.4759.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig123184:157..525+ (Macrocystis pyrifera P11B4 male)
GAGCTCGCCGCGCTCTGCAGCGAGCTGTGGGAGTACCAGATGAAGACGTA CCCGACGTGGTCGACCCAGATGGGCGACGGGCGCTACGACGGCAAGCTGT TCGACAACTCGGCGCGCGGCGAGCGCATGCGCAAGGAGGCGCTGCGCGAC TTCCAGGCCGACCTCGCGGACATCGACCGCGACGACCTCGTGCCCCAGGA CCAGCTGACCTACGACCTCGTGCGGCGCAAGCTGCGCGTGGACCTCGAGC GCGAGGCGTTCGCGCTCGACGAGTGGAACGTCAACGCGCGCGGCGGCCCG CAGGTCCGCTTCCTCTCGCTGGCCGCGGACCAGCCGGTCTTGACGCCCAA GCAGCGCGCCGACTACCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123184:157..525+

>mRNA_M-pyrifera_M_contig123184.4759.1 ID=mRNA_M-pyrifera_M_contig123184.4759.1|Name=mRNA_M-pyrifera_M_contig123184.4759.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig123184:157..525+ (Macrocystis pyrifera P11B4 male)
GAGCTCGCCGCGCTCTGCAGCGAGCTGTGGGAGTACCAGATGAAGACGTA
CCCGACGTGGTCGACCCAGATGGGCGACGGGCGCTACGACGGCAAGCTGT
TCGACAACTCGGCGCGCGGCGAGCGCATGCGCAAGGAGGCGCTGCGCGAC
TTCCAGGCCGACCTCGCGGACATCGACCGCGACGACCTCGTGCCCCAGGA
CCAGCTGACCTACGACCTCGTGCGGCGCAAGCTGCGCGTGGACCTCGAGC
GCGAGGCGTTCGCGCTCGACGAGTGGAACGTCAACGCGCGCGGCGGCCCG
CAGGTCCGCTTCCTCTCGCTGGCCGCGGACCAGCCGGTCTTGACGCCCAA
GCAGCGCGCCGACTACCTCGAGCTCGCCGCGCTCTGCAGCGAGCTGTGGG
AGTACCAGATGAAGACGTACCCGACGTGGTCGACCCAGATGGGCGACGGG
CGCTACGACGGCAAGCTGTTCGACAACTCGGCGCGCGGCGAGCGCATGCG
CAAGGAGGCGCTGCGCGACTTCCAGGCCGACCTCGCGGACATCGACCGCG
ACGACCTCGTGCCCCAGGACCAGCTGACCTACGACCTCGTGCGGCGCAAG
CTGCGCGTGGACCTCGAGCGCGAGGCGTTCGCGCTCGACGAGTGGAACGT
CAACGCGCGCGGCGGCCCGCAGGTCCGCTTCCTCTCGCTGGCCGCGGACC
AGCCGGTCTTGACGCCCAAGCAGCGCGCCGACTACCTC
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