mRNA_M-pyrifera_M_contig123182.4758.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: A0A7S1UFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UFU4_9STRA) HSP 1 Score: 204 bits (520), Expect = 7.370e-61 Identity = 100/168 (59.52%), Postives = 130/168 (77.38%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAR-EREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
W+NMA MCVKT+RLD+A VC+GNMGHARGA AVR AR E + E VA VA+QLGM+ +A+RLYR+ R+DLLN+L QA G W RAL++A HDR+HL+ATH+ FA+HLES+G+ + A R YE A+ HR+EVPRMLF+ +L +LE+Y+ +GD L RWWA + ES
Sbjct: 86 WQNMAHMCVKTKRLDVAEVCLGNMGHARGAAAVRKARSEADSTDETVVAAVAIQLGMLNDAQRLYRECRRYDLLNKLYQAAGLWDRALRIAERHDRIHLKATHHAFAKHLESIGEYKAAARHYESAETHRKEVPRMLFEQHRLEDLEKYIVRAGDSELQRWWAAYCES 253
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: UPI000642F84E (intraflagellar transport protein 140 homolog n=1 Tax=Condylura cristata TaxID=143302 RepID=UPI000642F84E) HSP 1 Score: 200 bits (509), Expect = 1.740e-60 Identity = 106/167 (63.47%), Postives = 127/167 (76.05%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WE+MARMCVKTRRLD+A VC+GNM HARGARA+R A E+E E EA VAM+A+QLGM+ +AE+LY GR+DLLN+LLQA GQW RAL++A DRVHLR+THY +ARHLE+ GD A YE +D HR EVPRML + LP LE YV D+ L RWWAQ+ ES
Sbjct: 13 WESMARMCVKTRRLDVARVCLGNMAHARGARALRQA-EQEPELEARVAMLAIQLGMLDDAEQLYEQCGRYDLLNKLLQASGQWQRALELAERRDRVHLRSTHYSYARHLEASGDRSRALSHYEKSDTHRFEVPRMLSE--DLPSLELYVDKMKDRALWRWWAQYLES 176
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: A0A7S2CPX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPX6_9STRA) HSP 1 Score: 208 bits (530), Expect = 8.510e-60 Identity = 104/178 (58.43%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 4 SAWENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQ-------LPELEQYVSVSGDKRLMRWWAQFQESAG 516
S WENMA MCVKT+RLD+A VC+GNMGHARGA AVRLA++ E EPEA +A VA+QLG++ +A+RLYR+ GR+DLLN+L QA G W RAL VA DR+HL+ TH+ +A HLE++GD+ GA + +E+AD HR EVPRMLFD Q L +LE+Y++ S D L++WWA + ES G
Sbjct: 240 SVWENMAHMCVKTKRLDVAEVCLGNMGHARGAAAVRLAKQ-EAEPEACIAAVAIQLGLIHDADRLYRECGRYDLLNQLYQASGFWDRALDVAETKDRIHLKTTHHHYAMHLEAIGDINGAVKHFELADTHRTEVPRMLFDLSQVSRDPKVLSKLEEYIAHSSDPELIKWWAGYCESIG 416
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: UPI001E670364 (intraflagellar transport protein 140 homolog n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E670364) HSP 1 Score: 209 bits (532), Expect = 1.860e-59 Identity = 106/169 (62.72%), Postives = 132/169 (78.11%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQESAG 516
WENMA+MCVKT+RLD+AA+C+GNMGHARGARA+R A +E + +A VAM+A+QLGM+ EAERLYR GR+DL+NRL Q GG W +AL+ A ++DR+HLR+THY +A+HLES GD GA YE +D HR EVPRMLFD LP LE Y+ + DK L RWWAQ+ ES G
Sbjct: 816 WENMAKMCVKTKRLDVAALCLGNMGHARGARALRQAM-KEPQLDARVAMLALQLGMMEEAERLYRGCGRYDLVNRLYQDGGIWSKALETAESNDRIHLRSTHYNYAKHLESKGDFSGAISHYEKSDTHRFEVPRMLFD--DLPTLEDYIMHTNDKALRRWWAQYLESTG 981
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: UPI001E1D0B9D (intraflagellar transport protein 140 homolog n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1D0B9D) HSP 1 Score: 208 bits (529), Expect = 4.710e-59 Identity = 106/167 (63.47%), Postives = 130/167 (77.84%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WENMA+MCVKT+RLD+AA+C+GNMGHARGARA+R A +E + +A VAM+A+QLGM+ EAERLYR GRHDLLNRL Q G W +AL+VA HDR+HLR++HY +A+HLES GD GA YE +D HR EVPRMLFD LP LE Y+ + D+ L RWWAQ+ ES
Sbjct: 816 WENMAKMCVKTKRLDVAALCLGNMGHARGARALRYAM-KEPQLDARVAMLALQLGMLDEAERLYRGCGRHDLLNRLHQDAGVWSKALEVAETHDRIHLRSSHYNYAKHLESKGDYSGAISHYEKSDTHRFEVPRMLFD--DLPTLEDYIMHTKDRALRRWWAQYLES 979
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: A0A388KSU2_CHABU (Reverse transcriptase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KSU2_CHABU) HSP 1 Score: 207 bits (528), Expect = 6.470e-59 Identity = 95/169 (56.21%), Postives = 134/169 (79.29%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQESAG 516
WENMA +C+KT+RLD+A C+GNMGHARGARA R A E+E EA VA +A+QLG++ +A++LY + GR+DLLN L QA G+W +A++VA+ HDR+HL THY++A+HLE++GDL GA + Y+++ HR EVPR+LFDA+QL +LE Y+ +GD ++M+WWA + ES G
Sbjct: 1434 WENMAHLCIKTKRLDVADHCLGNMGHARGARAAREAAASEQEVEARVAAIAIQLGLIEDAQQLYVNCGRYDLLNNLYQASGEWEKAVEVAQKHDRIHLSTTHYKYAKHLEAMGDLTGAIKAYQLSGTHRHEVPRLLFDAQQLDDLEAYIHSNGDPQMMKWWACYCESQG 1602
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: A0A8C6CIM6_MOSMO (Intraflagellar transport 140 n=1 Tax=Moschus moschiferus TaxID=68415 RepID=A0A8C6CIM6_MOSMO) HSP 1 Score: 202 bits (515), Expect = 5.110e-58 Identity = 107/167 (64.07%), Postives = 129/167 (77.25%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WENMARMCVKT+RLD+A VC+G+MGHARGARA+R A++ E EPEA VAM+AVQLGM+ +AE+LYR GR+DLLNRLLQA GQW RA++VA HDRVHLR T+Y +ARHLE+ GD A YE +D HR EVPRML + L L Y++ DK L RWWAQ+ ES
Sbjct: 117 WENMARMCVKTQRLDVARVCLGHMGHARGARALREAQQ-EPEPEARVAMLAVQLGMLEDAEQLYRRCGRYDLLNRLLQASGQWQRAIEVAERHDRVHLRTTYYNYARHLEASGDCSPAISYYEKSDTHRFEVPRMLVE--DLQALGLYINKMKDKTLWRWWAQYLES 280
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: A0A4W2C3K4_BOBOX (Intraflagellar transport 140 n=1 Tax=Bos indicus x Bos taurus TaxID=30522 RepID=A0A4W2C3K4_BOBOX) HSP 1 Score: 203 bits (517), Expect = 1.190e-57 Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WENMARMCVKT+RLD+A VC+G+MGHARGARA+R A +RE EPEA VAM+AVQLGM+ +AE+LYR GR+DLLNRLLQA GQW RA++VA HDR+HLR T+Y +ARHLE+ GD A YE +D HR EVPRML + L L YV+ DK L RWWAQ+ ES
Sbjct: 324 WENMARMCVKTQRLDVARVCLGHMGHARGARALREA-QREPEPEARVAMLAVQLGMLEDAEQLYRRCGRYDLLNRLLQASGQWQRAIEVAERHDRMHLRTTYYNYARHLEASGDCSPALSYYEKSDTHRFEVPRMLVE--DLQALGLYVNKMKDKTLWRWWAQYLES 487
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: E1B860_BOVIN (Intraflagellar transport 140 n=27 Tax=Pecora TaxID=35500 RepID=E1B860_BOVIN) HSP 1 Score: 203 bits (517), Expect = 1.940e-57 Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WENMARMCVKT+RLD+A VC+G+MGHARGARA+R A +RE EPEA VAM+AVQLGM+ +AE+LYR GR+DLLNRLLQA GQW RA++VA HDR+HLR T+Y +ARHLE+ GD A YE +D HR EVPRML + L L YV+ DK L RWWAQ+ ES
Sbjct: 799 WENMARMCVKTQRLDVARVCLGHMGHARGARALREA-QREPEPEARVAMLAVQLGMLEDAEQLYRRCGRYDLLNRLLQASGQWQRAIEVAERHDRMHLRTTYYNYARHLEASGDCSPALSYYEKSDTHRFEVPRMLVE--DLQALGLYVNKMKDKTLWRWWAQYLES 962
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Match: M5FK49_BOVIN (ANAPC4_WD40 domain-containing protein n=5 Tax=Pecora TaxID=35500 RepID=M5FK49_BOVIN) HSP 1 Score: 203 bits (517), Expect = 1.940e-57 Identity = 108/167 (64.67%), Postives = 129/167 (77.25%), Query Frame = 1
Query: 10 WENMARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQLGMVPEAERLYRDAGRHDLLNRLLQAGGQWHRALQVARAHDRVHLRATHYRFARHLESLGDLQGATRQYEMADAHRREVPRMLFDARQLPELEQYVSVSGDKRLMRWWAQFQES 510
WENMARMCVKT+RLD+A VC+G+MGHARGARA+R A +RE EPEA VAM+AVQLGM+ +AE+LYR GR+DLLNRLLQA GQW RA++VA HDR+HLR T+Y +ARHLE+ GD A YE +D HR EVPRML + L L YV+ DK L RWWAQ+ ES
Sbjct: 808 WENMARMCVKTQRLDVARVCLGHMGHARGARALREA-QREPEPEARVAMLAVQLGMLEDAEQLYRRCGRYDLLNRLLQASGQWQRAIEVAERHDRMHLRTTYYNYARHLEASGDCSPALSYYEKSDTHRFEVPRMLVE--DLQALGLYVNKMKDKTLWRWWAQYLES 971 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123182.4758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig123182.4758.1 >prot_M-pyrifera_M_contig123182.4758.1 ID=prot_M-pyrifera_M_contig123182.4758.1|Name=mRNA_M-pyrifera_M_contig123182.4758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp MARMCVKTRRLDMAAVCVGNMGHARGARAVRLAREREEEPEAAVAMVAVQback to top mRNA from alignment at M-pyrifera_M_contig123182:2..517+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig123182.4758.1 ID=mRNA_M-pyrifera_M_contig123182.4758.1|Name=mRNA_M-pyrifera_M_contig123182.4758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig123182:2..517+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig123182:2..517+ >mRNA_M-pyrifera_M_contig123182.4758.1 ID=mRNA_M-pyrifera_M_contig123182.4758.1|Name=mRNA_M-pyrifera_M_contig123182.4758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig123182:2..517+ (Macrocystis pyrifera P11B4 male)back to top |