mRNA_M-pyrifera_M_contig123159.4753.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123159.4753.1
Unique NamemRNA_M-pyrifera_M_contig123159.4753.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123159.4753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123159contigM-pyrifera_M_contig123159:130..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_003500.1
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815750.688103-CDS-M-pyrifera_M_contig123159:129..2421622815750.688103-CDS-M-pyrifera_M_contig123159:129..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123159 130..242 -
1692277551.9680457-CDS-M-pyrifera_M_contig123159:129..2421692277551.9680457-CDS-M-pyrifera_M_contig123159:129..242Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123159 130..242 -
1622815750.698269-CDS-M-pyrifera_M_contig123159:308..5251622815750.698269-CDS-M-pyrifera_M_contig123159:308..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123159 309..525 -
1692277551.978668-CDS-M-pyrifera_M_contig123159:308..5251692277551.978668-CDS-M-pyrifera_M_contig123159:308..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123159 309..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123159.4753.1prot_M-pyrifera_M_contig123159.4753.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123159 130..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123159.4753.1

>prot_M-pyrifera_M_contig123159.4753.1 ID=prot_M-pyrifera_M_contig123159.4753.1|Name=mRNA_M-pyrifera_M_contig123159.4753.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
CVCSPNRIYQAHGQLRSEAIWAESLRKTAISRSVIERVATTGLLVLIAAD
NQIGDRGAADLARVLARDRWLQHLDVSDNSIGVRGLTRLLESLITNEALP
HLIVHGNSSA
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mRNA from alignment at M-pyrifera_M_contig123159:130..525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123159.4753.1 ID=mRNA_M-pyrifera_M_contig123159.4753.1|Name=mRNA_M-pyrifera_M_contig123159.4753.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig123159:130..525- (Macrocystis pyrifera P11B4 male)
TGTGTGTGCTCACCAAACCGCATCTACCAGGCCCACGGCCAGCTGCGCAG
CGAGGCGATCTGGGCAGAGTCGCTGCGCAAGACGGCCATCTCGCGCAGCG
TGATTGAGCGGGTCGCCACCACCGGGCTGCTCGTGCTCATCGCCGCCGAC
AACCAGATCGGGGACAGGGGAGCCGCGGATCTTGCGCGCGTGCTCGCAAG
GGACCGGTGGCTGCAGCGTACGTGTGCGTGCGCGCGCACGCTTGCGCGCC
CGTACTCACCCAATTCCCCTTCCTCGCCTACAGACCTGGACGTGAGCGAC
AACAGCATCGGCGTGCGCGGACTCACGCGGCTCCTCGAATCGCTCATCAC
CAACGAGGCGCTCCCCCACCTCATCGTCCACGGCAACTCCAGCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123159:130..525-

>mRNA_M-pyrifera_M_contig123159.4753.1 ID=mRNA_M-pyrifera_M_contig123159.4753.1|Name=mRNA_M-pyrifera_M_contig123159.4753.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig123159:130..525- (Macrocystis pyrifera P11B4 male)
TGTGTGTGCTCACCAAACCGCATCTACCAGGCCCACGGCCAGCTGCGCAG
CGAGGCGATCTGGGCAGAGTCGCTGCGCAAGACGGCCATCTCGCGCAGCG
TGATTGAGCGGGTCGCCACCACCGGGCTGCTCGTGCTCATCGCCGCCGAC
AACCAGATCGGGGACAGGGGAGCCGCGGATCTTGCGCGCGTGCTCGCAAG
GGACCGGTGGCTGCAGCTGTGTGTGCTCACCAAACCGCATCTACCAGGCC
CACGGCCAGCTGCGCAGCGAGGCGATCTGGGCAGAGTCGCTGCGCAAGAC
GGCCATCTCGCGCAGCGTGATTGAGCGGGTCGCCACCACCGGGCTGCTCG
TGCTCATCGCCGCCGACAACCAGATCGGGGACAGGGGAGCCGCGGATCTT
GCGCGCGTGCTCGCAAGGGACCGGTGGCTGCAGCACCTGGACGTGAGCGA
CAACAGCATCGGCGTGCGCGGACTCACGCGGCTCCTCGAATCGCTCATCA
CCAACGAGGCGCTCCCCCACCTCATCGTCCACGGCAACTCCAGCGCCACC
TGGACGTGAGCGACAACAGCATCGGCGTGCGCGGACTCACGCGGCTCCTC
GAATCGCTCATCACCAACGAGGCGCTCCCCCACCTCATCGTCCACGGCAA
CTCCAGCGCC
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