mRNA_M-pyrifera_M_contig123108.4742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123108.4742.1
Unique NamemRNA_M-pyrifera_M_contig123108.4742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123108.4742.1 vs. uniprot
Match: D7G788_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G788_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.970e-43
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:   13 QIVSVGMTSKSLNPYDTSAPTEMFGDPVVRVFDARMPSRPGPPLQFSMLGAPRLVRFLADESLLLASSSGQFLLSKEPFGGLVG 264
            +IVSVGMTSKSLNPYDTSAPTE+FGDPVVRVFDARMP+RPGPPLQFSMLGAPRLVRFLADESL LASSSGQFL+SKEPF G+ G
Sbjct:  198 KIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPFTGVGG 281
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BLAST of mRNA_M-pyrifera_M_contig123108.4742.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.650e-40
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:   13 QIVSVGMTSKSLNPYDTSAPTEMFGDPVVRVFDARMPSRPGPPLQFSMLGAPRLVRFLADESLLLASSSGQFLLSKEPF 249
            QIVSVGMTSKSLNPYDTSAPTE+FGDPVVRVFDARMP+RPGPPLQFSMLGAPRLVRFLADESL LASSSGQFL+SKEPF
Sbjct:  163 QIVSVGMTSKSLNPYDTSAPTELFGDPVVRVFDARMPTRPGPPLQFSMLGAPRLVRFLADESLALASSSGQFLVSKEPF 241
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123108.4742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G788_ECTSI2.970e-4390.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX54_9PHAE3.650e-4094.94Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123108contigM-pyrifera_M_contig123108:239..505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExonuclease, RNase T/DNA polymerase III
Ec32 orthologEc-04_003770.1
Exons1
Model size267
Cds size237
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.884193-UTR-M-pyrifera_M_contig123108:238..2681622815749.884193-UTR-M-pyrifera_M_contig123108:238..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123108 239..268 +
1692277551.6714053-UTR-M-pyrifera_M_contig123108:238..2681692277551.6714053-UTR-M-pyrifera_M_contig123108:238..268Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123108 239..268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.8972874-CDS-M-pyrifera_M_contig123108:268..5051622815749.8972874-CDS-M-pyrifera_M_contig123108:268..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123108 269..505 +
1692277551.6825628-CDS-M-pyrifera_M_contig123108:268..5051692277551.6825628-CDS-M-pyrifera_M_contig123108:268..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123108 269..505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123108.4742.1prot_M-pyrifera_M_contig123108.4742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123108 269..505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123108.4742.1

>prot_M-pyrifera_M_contig123108.4742.1 ID=prot_M-pyrifera_M_contig123108.4742.1|Name=mRNA_M-pyrifera_M_contig123108.4742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MTSKSLNPYDTSAPTEMFGDPVVRVFDARMPSRPGPPLQFSMLGAPRLVR
FLADESLLLASSSGQFLLSKEPFGGLVGG
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mRNA from alignment at M-pyrifera_M_contig123108:239..505+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123108.4742.1 ID=mRNA_M-pyrifera_M_contig123108.4742.1|Name=mRNA_M-pyrifera_M_contig123108.4742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig123108:239..505+ (Macrocystis pyrifera P11B4 male)
ACAAACAAAAAGCAGATCGTTTCTGTGGGCATGACGTCCAAGTCCCTGAA
CCCTTACGACACCTCGGCCCCGACGGAGATGTTCGGCGACCCCGTCGTCA
GGGTTTTCGATGCGAGGATGCCTAGCAGACCCGGGCCGCCCCTGCAGTTC
AGCATGCTGGGCGCGCCTCGACTCGTCCGATTCCTGGCAGACGAGAGCCT
TCTTTTGGCGTCGTCGTCCGGACAGTTCTTGCTCTCCAAGGAGCCGTTTG
GTGGGTTGGTGGGCGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123108:239..505+

>mRNA_M-pyrifera_M_contig123108.4742.1 ID=mRNA_M-pyrifera_M_contig123108.4742.1|Name=mRNA_M-pyrifera_M_contig123108.4742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig123108:239..505+ (Macrocystis pyrifera P11B4 male)
ATGACGTCCAAGTCCCTGAACCCTTACGACACCTCGGCCCCGACGGAGAT
GTTCGGCGACCCCGTCGTCAGGGTTTTCGATGCGAGGATGCCTAGCAGAC
CCGGGCCGCCCCTGCAGTTCAGCATGCTGGGCGCGCCTCGACTCGTCCGA
TTCCTGGCAGACGAGAGCCTTCTTTTGGCGTCGTCGTCCGGACAGTTCTT
GCTCTCCAAGGAGCCGTTTGGTGGGTTGGTGGGCGGGATGACGTCCAAGT
CCCTGAACCCTTACGACACCTCGGCCCCGACGGAGATGTTCGGCGACCCC
GTCGTCAGGGTTTTCGATGCGAGGATGCCTAGCAGACCCGGGCCGCCCCT
GCAGTTCAGCATGCTGGGCGCGCCTCGACTCGTCCGATTCCTGGCAGACG
AGAGCCTTCTTTTGGCGTCGTCGTCCGGACAGTTCTTGCTCTCCAAGGAG
CCGTTTGGTGGGTTGGTGGGCGGG
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