mRNA_M-pyrifera_M_contig123049.4739.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123049.4739.1
Unique NamemRNA_M-pyrifera_M_contig123049.4739.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A812KHD2_9DINO (TFCC protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812KHD2_9DINO)

HSP 1 Score: 120 bits (302), Expect = 2.380e-30
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query:    4 VFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQR 336
            V+   ++GSV+LH+CQ C F  A+RQ+RLHTS  C F++   SRPIIE C +L FAPY +S PS+   L+ AGL P A   V  +W  VDDFGWH+V  SP++ +L   +R
Sbjct:  239 VYTGAVAGSVLLHNCQDCAFMLASRQIRLHTSTRCDFYLHVHSRPIIEFCSELRFAPYPVSFPSLPGELEEAGLQPIAAPSVAGMWREVDDFGWHKVQASPNWSVLPAAER 349          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A833SNM2_PHYIN (Tubulin binding cofactor C domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SNM2_PHYIN)

HSP 1 Score: 95.5 bits (236), Expect = 8.830e-21
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 VVFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQ 333
            V +   I GS+ L +C GC+FF A RQLR+H S   TF++R  S PIIE C+++ F PY L    +   L+  G+S  +      LWA+V+DF WH+  +SP++ I  P Q
Sbjct:  333 VFYTGAIFGSLWLENCNGCEFFVACRQLRVHLSTATTFYLRIPSHPIIEDCQQIQFGPYRLQFEGLKAQLERLGVSKDSG-----LWAKVNDFKWHKAQQSPNWSIRDPKQ 438          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A7S0HVR6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HVR6_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 9.010e-21
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    4 VFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQR 336
            + A+P+ G++ + +C  C F   ARQ+RLHTS  C F++  +S PIIE C+ L FAPY      +  A+  AGL P  N      W +VDDF W +  +SPH+ IL    R
Sbjct:   21 IVAVPLPGAIYVTECTDCTFVMGARQVRLHTSTGCDFYLHVSSHPIIERCDGLRFAPYPTLPAPLTGAVAAAGLDPSRNE-----WRQVDDFDWLKAQQSPHWSILPEPDR 126          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: W2PZ05_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2PZ05_PHYPN)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-20
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 VVFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQ 333
            V +   I GS+ L +C GC+FF A RQLR+H S   TF +R  S PIIE C+++ F PY +    +   L+  GLS  +      LWA+V+DF WH+  +SP+++I  P Q
Sbjct:  329 VFYTGAIFGSLWLENCNGCEFFVACRQLRVHLSTATTFHLRIPSHPIIEDCQQMQFGPYRIQFDGLEAQLERLGLSKDSG-----LWAKVNDFKWHKAQQSPNWNIRDPKQ 434          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A662WH21_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WH21_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.730e-20
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 VVFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQ 333
            V +   + GSV L  C GC+FF A RQLR+H S   TF +R AS PIIE C+++ F PY L    +   L+  GL   +      LWA+V+DF WH+  +SP++ +  P Q
Sbjct:  340 VFYTGAVFGSVWLETCDGCEFFVACRQLRVHLSTATTFHLRIASHPIIEDCQQMQFGPYRLQFDDLKTQLERLGLLKDSG-----LWAKVNDFKWHKAQQSPNWRLCDPKQ 445          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A2R5G785_9STRA (Tubulin-specific chaperone C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G785_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.050e-20
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    4 VFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQR 336
            +F  P++GS     C+ C F  A+RQ+R+H S  C F++   SRPIIEHC  L FAPY LS+  +   +  AGL+    A++   W  VDDF W R  +SP++ IL    R
Sbjct:  275 IFVGPVAGSCFFEACEDCVFMIASRQIRIHDSTRCDFYLHVLSRPIIEHCNALRFAPYGLSYKGLDSQVQAAGLAAPRAADM---WKDVDDFRWLRQQQSPNWAILDEADR 382          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A329SUW7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SUW7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.190e-20
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    1 VVFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQ 333
            V +   I GS+ L +C GC+FF A RQLR+H S   TF +R  S PIIE C+++ F PY +    +   L+  GLS  +      LWA+V+DF WH+  +SP++ I  P Q
Sbjct:  334 VFYTGAIFGSLWLENCDGCEFFVACRQLRVHLSTATTFHLRIRSHPIIEDCQQMQFGPYRVQFDGLKAQLERLGLSKDSG-----LWAKVNDFKWHKTQQSPNWSIRDPKQ 439          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A2P2NI36_RHIMU (Uncharacterized protein MANES_12G134100 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2NI36_RHIMU)

HSP 1 Score: 89.4 bits (220), Expect = 3.250e-20
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    4 VFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQR 336
            VFA P+ GS+++ D + C F  A+ Q+R+H +    F++R  SRPIIE C+ + FAPY L +  + E L  AGL      E    WA+VDDF W R  +SP++ +L   +R
Sbjct:   33 VFAGPVIGSILIEDVENCVFMLASHQIRIHYTKGSDFYLRLRSRPIIEDCKGVRFAPYCLQYEGVEEDLREAGLE-----EESGNWAKVDDFKWLRAVQSPNWSVLEEGER 138          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A421FXL1_9STRA (C-CAP/cofactor C-like domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FXL1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.700e-20
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 1
Query:    1 VVFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSI---LEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQ 333
            V +   + GSV L +C GC+FF A RQLR+H S   TF +R  S PIIE C+++ F PY L    +   LE L+T   S         LWA+V+DF WH+ H+SP++ I +P Q
Sbjct:  302 VFYTGAVFGSVWLENCNGCEFFVACRQLRVHLSAATTFHLRIPSHPIIEDCQQMQFGPYRLQFDGLKAQLERLNTLKDS--------GLWAKVNDFKWHKTHQSPNWSIRNPKQ 407          
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Match: A0A7S1CQH9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQH9_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.470e-20
Identity = 47/111 (42.34%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    4 VFAMPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKLSFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHFHILSPDQR 336
            V+A  +SGSV+L  C  C F  ++RQ+R+H+S  C +++   S PIIEH   L FAP  L +  I      AGL+ +  A   +LWA VDDFGWHR   SP++ +++P +R
Sbjct:  238 VYAGAVSGSVLLDACTDCVFVLSSRQIRIHSSQRCDYYLHVLSHPIIEHSSALRFAPCGLRYDGIDAQRARAGLAAERAA---TLWAAVDDFGWHRSQASPNWSVIAPAER 345          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123049.4739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812KHD2_9DINO2.380e-3049.55TFCC protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A833SNM2_PHYIN8.830e-2141.44Tubulin binding cofactor C domain-containing prote... [more]
A0A7S0HVR6_9EUKA9.010e-2140.54Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
W2PZ05_PHYPN1.640e-2041.44Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
A0A662WH21_9STRA1.730e-2041.44Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A2R5G785_9STRA2.050e-2041.44Tubulin-specific chaperone C n=1 Tax=Hondaea ferme... [more]
A0A329SUW7_9STRA3.190e-2041.44Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P2NI36_RHIMU3.250e-2040.54Uncharacterized protein MANES_12G134100 n=1 Tax=Rh... [more]
A0A421FXL1_9STRA3.700e-2042.98C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A7S1CQH9_9STRA4.470e-2042.34Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123049contigM-pyrifera_M_contig123049:2..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue1e-19
Seed eggNOG ortholog227086.JGI_V11_86651
Preferred nameTBCC
KEGG koko:K03860,ko:K21766
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0003824,GO:0003924,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0005929,GO:0006457,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007023,GO:0008047,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0030234,GO:0030695,GO:0032391,GO:0032991,GO:0034622,GO:0035869,GO:0042995,GO:0043005,GO:0043085,GO:0043087,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043547,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0050790,GO:0051082,GO:0051087,GO:0051336,GO:0051345,GO:0060589,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120038,GO:1990727
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size336
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.6850934-UTR-M-pyrifera_M_contig123049:1..131622815749.6850934-UTR-M-pyrifera_M_contig123049:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123049 2..13 +
1692277551.553448-UTR-M-pyrifera_M_contig123049:1..131692277551.553448-UTR-M-pyrifera_M_contig123049:1..13Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig123049 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.6992397-CDS-M-pyrifera_M_contig123049:13..3371622815749.6992397-CDS-M-pyrifera_M_contig123049:13..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123049 14..337 +
1692277551.567745-CDS-M-pyrifera_M_contig123049:13..3371692277551.567745-CDS-M-pyrifera_M_contig123049:13..337Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123049 14..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123049.4739.1prot_M-pyrifera_M_contig123049.4739.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123049 14..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123049.4739.1

>prot_M-pyrifera_M_contig123049.4739.1 ID=prot_M-pyrifera_M_contig123049.4739.1|Name=mRNA_M-pyrifera_M_contig123049.4739.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
MPISGSVILHDCQGCKFFFAARQLRLHTSILCTFFIRSASRPIIEHCEKL
SFAPYMLSHPSILEALDTAGLSPKANAEVPSLWARVDDFGWHRVHRSPHF
HILSPDQR
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mRNA from alignment at M-pyrifera_M_contig123049:2..337+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123049.4739.1 ID=mRNA_M-pyrifera_M_contig123049.4739.1|Name=mRNA_M-pyrifera_M_contig123049.4739.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig123049:2..337+ (Macrocystis pyrifera P11B4 male)
GTGGTGTTTGCCATGCCAATTTCTGGGAGTGTCATTTTACACGATTGTCA AGGTTGCAAGTTCTTCTTTGCAGCACGTCAACTTCGTCTCCACACTTCCA TCTTGTGCACATTTTTCATTCGCTCTGCATCTCGACCAATCATTGAACAT TGTGAGAAGCTCTCATTCGCCCCATACATGCTCTCCCACCCTTCCATCCT CGAAGCACTCGATACTGCTGGCCTCTCTCCCAAAGCCAACGCTGAAGTGC CATCCTTGTGGGCTCGAGTGGACGATTTTGGGTGGCATCGAGTGCATCGC TCTCCTCATTTCCACATTCTCTCCCCCGACCAACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123049:2..337+

>mRNA_M-pyrifera_M_contig123049.4739.1 ID=mRNA_M-pyrifera_M_contig123049.4739.1|Name=mRNA_M-pyrifera_M_contig123049.4739.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig123049:2..337+ (Macrocystis pyrifera P11B4 male)
ATGCCAATTTCTGGGAGTGTCATTTTACACGATTGTCAAGGTTGCAAGTT
CTTCTTTGCAGCACGTCAACTTCGTCTCCACACTTCCATCTTGTGCACAT
TTTTCATTCGCTCTGCATCTCGACCAATCATTGAACATTGTGAGAAGCTC
TCATTCGCCCCATACATGCTCTCCCACCCTTCCATCCTCGAAGCACTCGA
TACTGCTGGCCTCTCTCCCAAAGCCAACGCTGAAGTGCCATCCTTGTGGG
CTCGAGTGGACGATTTTGGGTGGCATCGAGTGCATCGCTCTCCTCATTTC
CACATTCTCTCCCCCGACCAACGCATGCCAATTTCTGGGAGTGTCATTTT
ACACGATTGTCAAGGTTGCAAGTTCTTCTTTGCAGCACGTCAACTTCGTC
TCCACACTTCCATCTTGTGCACATTTTTCATTCGCTCTGCATCTCGACCA
ATCATTGAACATTGTGAGAAGCTCTCATTCGCCCCATACATGCTCTCCCA
CCCTTCCATCCTCGAAGCACTCGATACTGCTGGCCTCTCTCCCAAAGCCA
ACGCTGAAGTGCCATCCTTGTGGGCTCGAGTGGACGATTTTGGGTGGCAT
CGAGTGCATCGCTCTCCTCATTTCCACATTCTCTCCCCCGACCAACGC
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