mRNA_M-pyrifera_M_contig123042.4738.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123042.4738.1
Unique NamemRNA_M-pyrifera_M_contig123042.4738.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A5A8CE79_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CE79_CAFRO)

HSP 1 Score: 120 bits (301), Expect = 1.290e-29
Identity = 53/93 (56.99%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 SLESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTS-RDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFVDT 285
            +L ++ PLEGDG+I NLY YLW KD L RGP GVR+PDTV+F+ R+PVAW+FTS +DG+I+R+ +A++  ENIE+ FL+  G+  + AYF+DT
Sbjct:    3 ALAAKSPLEGDGVIENLYEYLWEKDNLDRGPMGVRVPDTVVFKLRSPVAWYFTSAKDGTIKRKRKANLTMENIEEGFLSGLGSCGVAAYFIDT 95
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A813CRY9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CRY9_9DINO)

HSP 1 Score: 120 bits (301), Expect = 1.290e-29
Identity = 53/93 (56.99%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 SLESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTS-RDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFVDT 285
            +L ++ PLEGDG+I NLY YLW KD L RGP GVR+PDTV+F+ R+PVAW+FTS +DG+I+R+ +A++  ENIE+ FL+  G+  + AYF+DT
Sbjct:    3 ALAAKSPLEGDGVIENLYEYLWEKDNLDRGPMGVRVPDTVVFKLRSPVAWYFTSAKDGTIKRKRKANLTMENIEEGFLSGLGSCGVAAYFIDT 95
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A2R5GGU9_9STRA (Small glutamine-rich tetratricopeptide repeat-containing protein beta n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGU9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.720e-22
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 1 
Query:    4 SGSLESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSRDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFVDTS 288
            SG   +R PLEGDG+I NLYH+LW++D L  GP  + +PDTV++ FR P  W+FTSR G I++++R +++   IE+ F   + ASDIVA ++ T+
Sbjct:    3 SGVSLTRLPLEGDGVIKNLYHFLWTRDELDCGPK-INIPDTVIYEFRQPATWYFTSRSGHIKKKSRYNLSNIRIEETFTRNSLASDIVACYLSTN 96
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A397DGK7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DGK7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.030e-21
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   16 ESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSRDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            E+ + LEGDG++ NL++YLW KD  G GPS + +PDTV+++F  P  W+FTS+ G ++++ +AS+    IE  F  K+   DIVAY++
Sbjct:    4 EANWGLEGDGVVENLFYYLWCKDEFGGGPS-LLIPDTVVYKFTQPAFWYFTSKSGKVKKKAKASLTNVQIEKEFCRKSCGVDIVAYYI 90
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A397AS04_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AS04_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.460e-21
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   16 ESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSRDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            E+ + LEGDG++ NL++YLW KD  G GPS + +PDTV+++F  P  W+FTS+ G ++++ +AS+    IE  F  K+   DIVAY++
Sbjct:    4 EANWGLEGDGVVENLFYYLWCKDEFGGGPS-LLVPDTVVYKFTQPAFWYFTSKSGKVKKKAKASLTNVQIEKEFCRKSCGVDIVAYYI 90
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: G4ZM30_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZM30_PHYSP)

HSP 1 Score: 95.5 bits (236), Expect = 7.460e-21
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   28 PLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSR-DGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            PLEGDGL+ NL+HYLW+ D LG GP  V +P TV++R   PVAW+FTSR  G I+R++RA++ A +IE +F  +  ++DIVAY++
Sbjct:    6 PLEGDGLVENLFHYLWTTDDLGGGPR-VSVPPTVIYRGSQPVAWYFTSRKSGRIKRKHRANLTAAHIEHSFTKRKASTDIVAYYL 89
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A329S7F5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S7F5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.660e-21
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:   28 PLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSR-DGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            PLEGDGL+ NL+HYLW+ D LG GP  V +P TV++R   PVAW+FTSR  G I+R++RA++ A ++E +F  +  A+DIVAY++
Sbjct:    6 PLEGDGLVENLFHYLWTTDDLGGGPR-VCVPPTVIYRGSQPVAWYFTSRKSGRIKRKHRANLTAAHVEHSFTKRKAATDIVAYYL 89
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BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A225X014_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X014_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.040e-20
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   28 PLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSR-DGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            PLEGDGL+ NL+HYLW+ D LG GP  V +P TV++R   PVAW+FTSR  G I+R++RA++ A +IE +F  +   +DIVAY++
Sbjct:    6 PLEGDGLVENLFHYLWTTDDLGGGPR-VSVPPTVIYRGSQPVAWYFTSRKSGRIKRKHRANLTAAHIEHSFTKRRATTDIVAYYL 89
[Close]
BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: W2QAF2_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QAF2_PHYPN)

HSP 1 Score: 95.1 bits (235), Expect = 1.050e-20
Identity = 48/96 (50.00%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:   28 PLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSR-DGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV------DTSPS 294
            PLEGDGL+ NL+HYLW+ D LG GP  V +P TV++    PVAW+FTSR  G I+R++RA++ A +IE +F  +  A+DIVAY++      +TSP+
Sbjct:   26 PLEGDGLVENLFHYLWTTDDLGGGPR-VSVPPTVIYHGSQPVAWYFTSRKSGRIKRKHRANLTAAHIEHSFTKRKAATDIVAYYLYLPKAENTSPA 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Match: A0A6A3UK57_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3UK57_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.430e-20
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:   28 PLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTPVAWFFTSR-DGSIRRRNRASINAENIEDAFLAKAGASDIVAYFV 279
            PLEGDGL+ NL+HYLW+ D LG GP  V +P TV++R   PVAW+FTSR  G I R++RA++ A +IE +F  +  ++DIVAY++
Sbjct:    6 PLEGDGLVENLFHYLWTTDDLGGGPR-VSVPPTVIYRGSQPVAWYFTSRRSGRIERKHRANLTAAHIEHSFTKRRASTDIVAYYL 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123042.4738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CE79_CAFRO1.290e-2956.99Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A813CRY9_9DINO1.290e-2956.99Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A2R5GGU9_9STRA4.720e-2247.37Small glutamine-rich tetratricopeptide repeat-cont... [more]
A0A397DGK7_9STRA1.030e-2144.32Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A397AS04_9STRA1.460e-2144.32Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
G4ZM30_PHYSP7.460e-2152.94Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A329S7F5_9STRA7.660e-2152.94Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225X014_9STRA1.040e-2052.94Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
W2QAF2_PHYPN1.050e-2050.00Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
A0A6A3UK57_9STRA1.430e-2052.94Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123042contigM-pyrifera_M_contig123042:149..442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue5e-18
Seed eggNOG ortholog4792.ETI48004
Hectar predicted targeting categoryother localisation
EggNOG OGs28Q4D@1,2QWT8@2759,3QG7U@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.6475697-CDS-M-pyrifera_M_contig123042:148..4421622815749.6475697-CDS-M-pyrifera_M_contig123042:148..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123042 149..442 -
1692277551.5336971-CDS-M-pyrifera_M_contig123042:148..4421692277551.5336971-CDS-M-pyrifera_M_contig123042:148..442Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123042 149..442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123042.4738.1prot_M-pyrifera_M_contig123042.4738.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123042 149..442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123042.4738.1

>prot_M-pyrifera_M_contig123042.4738.1 ID=prot_M-pyrifera_M_contig123042.4738.1|Name=mRNA_M-pyrifera_M_contig123042.4738.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MSGSLESRYPLEGDGLIPNLYHYLWSKDALGRGPSGVRLPDTVLFRFRTP
VAWFFTSRDGSIRRRNRASINAENIEDAFLAKAGASDIVAYFVDTSPS
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mRNA from alignment at M-pyrifera_M_contig123042:149..442-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123042.4738.1 ID=mRNA_M-pyrifera_M_contig123042.4738.1|Name=mRNA_M-pyrifera_M_contig123042.4738.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig123042:149..442- (Macrocystis pyrifera P11B4 male)
ATGTCGGGATCATTGGAATCTCGATACCCGTTGGAGGGAGATGGCCTAAT
TCCCAACTTGTACCACTATTTGTGGAGTAAAGATGCGCTAGGACGGGGAC
CCAGTGGGGTACGGCTCCCTGACACGGTGTTGTTTCGGTTTCGAACACCT
GTAGCGTGGTTTTTCACGTCAAGAGATGGCAGCATTCGGCGTCGTAACCG
TGCTAGCATCAATGCAGAGAACATTGAGGATGCATTCTTGGCAAAGGCTG
GAGCAAGTGACATTGTGGCATACTTTGTGGATACTTCACCATCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig123042:149..442-

>mRNA_M-pyrifera_M_contig123042.4738.1 ID=mRNA_M-pyrifera_M_contig123042.4738.1|Name=mRNA_M-pyrifera_M_contig123042.4738.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig123042:149..442- (Macrocystis pyrifera P11B4 male)
ATGTCGGGATCATTGGAATCTCGATACCCGTTGGAGGGAGATGGCCTAAT
TCCCAACTTGTACCACTATTTGTGGAGTAAAGATGCGCTAGGACGGGGAC
CCAGTGGGGTACGGCTCCCTGACACGGTGTTGTTTCGGTTTCGAACACCT
GTAGCGTGGTTTTTCACGTCAAGAGATGGCAGCATTCGGCGTCGTAACCG
TGCTAGCATCAATGCAGAGAACATTGAGGATGCATTCTTGGCAAAGGCTG
GAGCAAGTGACATTGTGGCATACTTTGTGGATACTTCACCATCTATGTCG
GGATCATTGGAATCTCGATACCCGTTGGAGGGAGATGGCCTAATTCCCAA
CTTGTACCACTATTTGTGGAGTAAAGATGCGCTAGGACGGGGACCCAGTG
GGGTACGGCTCCCTGACACGGTGTTGTTTCGGTTTCGAACACCTGTAGCG
TGGTTTTTCACGTCAAGAGATGGCAGCATTCGGCGTCGTAACCGTGCTAG
CATCAATGCAGAGAACATTGAGGATGCATTCTTGGCAAAGGCTGGAGCAA
GTGACATTGTGGCATACTTTGTGGATACTTCACCATCT
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