mRNA_M-pyrifera_M_contig123021.4734.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig123021.4734.1
Unique NamemRNA_M-pyrifera_M_contig123021.4734.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A517WDY8_9PLAN (Extracellular serine protease n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WDY8_9PLAN)

HSP 1 Score: 183 bits (464), Expect = 3.090e-50
Identity = 163/175 (93.14%), Postives = 164/175 (93.71%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA 525
            TISTLGTGAILLTSNRNIK        TV GGITLLAND GL AGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSS+ASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA
Sbjct: 3713 TISTLGTGAILLTSNRNIKXXXXXXXXTVXGGITLLANDGGLTAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSSASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA 3887
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A6I6AK40_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AK40_9PLAN)

HSP 1 Score: 183 bits (464), Expect = 3.110e-50
Identity = 163/175 (93.14%), Postives = 164/175 (93.71%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA 525
            TISTLGTGAILLTSNRNIK        TV GGITLLAND GL AGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSS+ASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA
Sbjct: 5165 TISTLGTGAILLTSNRNIKXXXXXXXXTVXGGITLLANDGGLTAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSSASGIDAGTITINGTAGEGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADITILGTTTA 5339
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A517VWK0_9PLAN (Cadherin domain protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VWK0_9PLAN)

HSP 1 Score: 163 bits (413), Expect = 2.240e-43
Identity = 86/113 (76.11%), Postives = 99/113 (87.61%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            TI+T GTGA+LLTS RNIKLN+GSNL+TVNGGITLLAND G+ AGDF G+EA+NATI TTG GNIL+TGFGGAD +TSDH+GV LHSGT+V+ST +G  AGTITINGT G GI
Sbjct: 4133 TIATFGTGALLLTSTRNIKLNNGSNLRTVNGGITLLANDGGVTAGDFSGIEAENATIETTGEGNILLTGFGGADALTSDHYGVHLHSGTSVTSTDTGASAGTITINGTGGTGI 4245
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A517X0I5_9PLAN (Cadherin domain protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X0I5_9PLAN)

HSP 1 Score: 159 bits (401), Expect = 9.190e-42
Identity = 85/113 (75.22%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            TI+T GTGA+LLTS RNIKLNSGSNL+TVNGGITLLAND G+ AGDF G+EA+NATI TTG GNIL+TGFGG   +TSDH+GV LHSGT+V+ST +G  AGTITINGT G GI
Sbjct: 4239 TIATFGTGALLLTSTRNIKLNSGSNLRTVNGGITLLANDGGVTAGDFSGIEAENATIQTTGEGNILLTGFGGVGALTSDHYGVHLHSGTSVTSTDTGALAGTITINGTGGTGI 4351
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A517RGJ3_9PLAN (Extracellular serine protease n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RGJ3_9PLAN)

HSP 1 Score: 158 bits (399), Expect = 1.700e-41
Identity = 83/113 (73.45%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            TI+T GTGA+LLTS RNIKLNSGSNLKTVN GITLLAN+ G+  GDF G+EADNA I T+GTGNI ITGFGG D +T  HHGV+LHSGTTV ST +G+ AGTITINGT G G+
Sbjct: 3579 TITTFGTGALLLTSTRNIKLNSGSNLKTVNXGITLLANNGGITTGDFTGIEADNAGIQTSGTGNISITGFGGTDALTGSHHGVYLHSGTTVISTDTGVSAGTITINGTGGTGL 3691
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A518IDE5_9PLAN (Extracellular serine protease n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IDE5_9PLAN)

HSP 1 Score: 155 bits (393), Expect = 1.090e-40
Identity = 82/113 (72.57%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            TI+T GTGA+LLTS RNIKLNSGSNLKTVNGGITLLAN+ G+  GDF G+EADNA I T+GTGNI ITGFGG D +T  H GV LH+GTTV ST +G+ AGTITINGT G G+
Sbjct: 3712 TITTFGTGALLLTSTRNIKLNSGSNLKTVNGGITLLANNGGITTGDFTGIEADNAVIQTSGTGNISITGFGGTDALTGSHQGVHLHTGTTVISTDTGVSAGTITINGTGGTGL 3824
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A3D3RB91_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RB91_9PLAN)

HSP 1 Score: 143 bits (361), Expect = 2.110e-36
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            T+ST   G +LLTS RNIKLNSGSNLKTVNGGITL AN  G  +GDF G+EA+NA+++T+G G+I +TGFGG D  TS+H+GV LHSGTTVSST  G+ AGTI INGT G GI
Sbjct:   16 TVSTFSAGVLLLTSTRNIKLNSGSNLKTVNGGITLQANTAGTTSGDFTGIEAENASVTTSGLGSINLTGFGGLDAGTSNHYGVHLHSGTTVSSTDIGVSAGTININGTGGTGI 128
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A2D5H4Y5_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2D5H4Y5_9PLAN)

HSP 1 Score: 143 bits (361), Expect = 2.140e-36
Identity = 76/113 (67.26%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            T+ST   G +LLTS RNIKLNSGSNLKTVNGGITL AN  G  +GDF G+EA+NA+++T+G G+I +TGFGG D  TS+H+GV LHSGTTVSST  G+ AGTI INGT G GI
Sbjct:  838 TVSTFSAGVLLLTSTRNIKLNSGSNLKTVNGGITLQANTAGTTSGDFTGIEAENASVTTSGLGSINLTGFGGLDAGTSNHYGVHLHSGTTVSSTDIGVSAGTININGTGGTGI 950
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A0A350K853_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K853_9PLAN)

HSP 1 Score: 142 bits (358), Expect = 5.360e-36
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            T+ST   G +LLTS RNI+LNSGSNLKTVNGGITL AN  G  +GDF G+EA+NA+++T+G G+I +TGFGG D  TS+H+GV LHSGTTVSST  G+ AGTI INGT G GI
Sbjct:  578 TVSTFSAGVLLLTSTRNIQLNSGSNLKTVNGGITLQANSAGTTSGDFTGIEAENASVTTSGLGSINLTGFGGLDAGTSNHYGVHLHSGTTVSSTDIGVSAGTININGTGGTGI 690
[Close]
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Match: A6BZA6_9PLAN (VCBS n=4 Tax=Gimesia maris TaxID=122 RepID=A6BZA6_9PLAN)

HSP 1 Score: 140 bits (354), Expect = 1.910e-35
Identity = 75/113 (66.37%), Postives = 90/113 (79.65%), Query Frame = 1 
Query:    1 TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGVEADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDAGTITINGTAGEGI 339
            T+ST   G +LLTS RNI+LNSGSNLKTVNGGITL AN  G  +GDF G+EA+NA+I+T+G+G+I +TGFGG D  TS+H+GV LHSGTTVSST  G+ AG I INGT G GI
Sbjct: 3515 TVSTFSAGVLLLTSTRNIQLNSGSNLKTVNGGITLQANTAGTTSGDFTGIEAENASITTSGSGSINLTGFGGLDAGTSNHYGVHLHSGTTVSSTDIGVSAGIININGTGGTGI 3627
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig123021.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WDY8_9PLAN3.090e-5093.14Extracellular serine protease n=5 Tax=Gimesia TaxI... [more]
A0A6I6AK40_9PLAN3.110e-5093.14Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]
A0A517VWK0_9PLAN2.240e-4376.11Cadherin domain protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517X0I5_9PLAN9.190e-4275.22Cadherin domain protein n=1 Tax=Gimesia aquarii Ta... [more]
A0A517RGJ3_9PLAN1.700e-4173.45Extracellular serine protease n=1 Tax=Gimesia alba... [more]
A0A518IDE5_9PLAN1.090e-4072.57Extracellular serine protease n=1 Tax=Gimesia fuma... [more]
A0A3D3RB91_9PLAN2.110e-3667.26Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A2D5H4Y5_9PLAN2.140e-3667.26Uncharacterized protein (Fragment) n=1 Tax=Gimesia... [more]
A0A350K853_9PLAN5.360e-3666.37Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A6BZA6_9PLAN1.910e-3566.37VCBS n=4 Tax=Gimesia maris TaxID=122 RepID=A6BZA6_... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig123021contigM-pyrifera_M_contig123021:2..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score144.4
Seed ortholog evalue4.9e-32
Seed eggNOG ortholog344747.PM8797T_28774
Preferred namehxuA
KEGG koko:K01317
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005576
EggNOG free text desc.domain, Protein
EggNOG OGs2J27Z@203682,COG1572@1,COG1572@2,COG3210@1,COG3210@2,COG4625@1,COG4625@2
EC3.4.21.10
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04131
Exons1
Model size525
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.486885-CDS-M-pyrifera_M_contig123021:1..5261622815749.486885-CDS-M-pyrifera_M_contig123021:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123021 2..526 +
1692277551.4683204-CDS-M-pyrifera_M_contig123021:1..5261692277551.4683204-CDS-M-pyrifera_M_contig123021:1..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig123021 2..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig123021.4734.1prot_M-pyrifera_M_contig123021.4734.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig123021 2..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig123021.4734.1

>prot_M-pyrifera_M_contig123021.4734.1 ID=prot_M-pyrifera_M_contig123021.4734.1|Name=mRNA_M-pyrifera_M_contig123021.4734.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
TISTLGTGAILLTSNRNIKLNSGSNLKTVNGGITLLANDLGLAAGDFIGV
EADNATISTTGTGNILITGFGGADVVTSDHHGVFLHSGTTVSSTASGIDA
GTITINGTAGEGINDNHGVMIDGAGTNITSTDGEIGITGTTDYGTGFAIS
DQSKIVSNGAGVNAADITILGTTTA
back to top

mRNA from alignment at M-pyrifera_M_contig123021:2..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig123021.4734.1 ID=mRNA_M-pyrifera_M_contig123021.4734.1|Name=mRNA_M-pyrifera_M_contig123021.4734.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=525bp|location=Sequence derived from alignment at M-pyrifera_M_contig123021:2..526+ (Macrocystis pyrifera P11B4 male)
ACCATCAGCACACTGGGAACCGGTGCAATTCTGCTGACATCGAACCGGAA
TATCAAACTGAACAGTGGCAGCAACCTGAAAACAGTCAACGGCGGCATTA
CACTGCTGGCCAATGATCTTGGCTTAGCTGCGGGCGATTTCATCGGTGTA
GAGGCAGACAATGCGACGATCTCGACTACCGGAACAGGCAACATCCTGAT
TACCGGCTTCGGCGGAGCGGATGTCGTGACCAGTGATCATCATGGCGTCT
TCCTGCATTCCGGAACGACAGTCTCGTCCACAGCCAGCGGAATCGATGCA
GGCACGATCACTATCAATGGGACCGCGGGAGAGGGAATCAACGACAATCA
TGGTGTCATGATTGATGGTGCAGGCACGAATATCACGTCTACCGATGGCG
AAATTGGAATCACTGGAACCACGGATTACGGCACCGGTTTTGCGATCTCC
GACCAGTCAAAGATTGTCTCGAATGGTGCGGGTGTCAATGCAGCGGACAT
CACCATTCTGGGAACAACGACTGCA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig123021:2..526+

>mRNA_M-pyrifera_M_contig123021.4734.1 ID=mRNA_M-pyrifera_M_contig123021.4734.1|Name=mRNA_M-pyrifera_M_contig123021.4734.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig123021:2..526+ (Macrocystis pyrifera P11B4 male)
ACCATCAGCACACTGGGAACCGGTGCAATTCTGCTGACATCGAACCGGAA
TATCAAACTGAACAGTGGCAGCAACCTGAAAACAGTCAACGGCGGCATTA
CACTGCTGGCCAATGATCTTGGCTTAGCTGCGGGCGATTTCATCGGTGTA
GAGGCAGACAATGCGACGATCTCGACTACCGGAACAGGCAACATCCTGAT
TACCGGCTTCGGCGGAGCGGATGTCGTGACCAGTGATCATCATGGCGTCT
TCCTGCATTCCGGAACGACAGTCTCGTCCACAGCCAGCGGAATCGATGCA
GGCACGATCACTATCAATGGGACCGCGGGAGAGGGAATCAACGACAATCA
TGGTGTCATGATTGATGGTGCAGGCACGAATATCACGTCTACCGATGGCG
AAATTGGAATCACTGGAACCACGGATTACGGCACCGGTTTTGCGATCTCC
GACCAGTCAAAGATTGTCTCGAATGGTGCGGGTGTCAATGCAGCGGACAT
CACCATTCTGGGAACAACGACTGCAACCATCAGCACACTGGGAACCGGTG
CAATTCTGCTGACATCGAACCGGAATATCAAACTGAACAGTGGCAGCAAC
CTGAAAACAGTCAACGGCGGCATTACACTGCTGGCCAATGATCTTGGCTT
AGCTGCGGGCGATTTCATCGGTGTAGAGGCAGACAATGCGACGATCTCGA
CTACCGGAACAGGCAACATCCTGATTACCGGCTTCGGCGGAGCGGATGTC
GTGACCAGTGATCATCATGGCGTCTTCCTGCATTCCGGAACGACAGTCTC
GTCCACAGCCAGCGGAATCGATGCAGGCACGATCACTATCAATGGGACCG
CGGGAGAGGGAATCAACGACAATCATGGTGTCATGATTGATGGTGCAGGC
ACGAATATCACGTCTACCGATGGCGAAATTGGAATCACTGGAACCACGGA
TTACGGCACCGGTTTTGCGATCTCCGACCAGTCAAAGATTGTCTCGAATG
GTGCGGGTGTCAATGCAGCGGACATCACCATTCTGGGAACAACGACTGCA
back to top