mRNA_M-pyrifera_M_contig12302.4733.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig12302.4733.1
Unique NamemRNA_M-pyrifera_M_contig12302.4733.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig12302.4733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig12302contigM-pyrifera_M_contig12302:1001..1473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size473
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig12302.4733.1prot_M-pyrifera_M_contig12302.4733.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig12302 1101..1406 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.4168801-UTR-M-pyrifera_M_contig12302:1000..11001622815749.4168801-UTR-M-pyrifera_M_contig12302:1000..1100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12302 1001..1100 +
1692277551.434926-UTR-M-pyrifera_M_contig12302:1000..11001692277551.434926-UTR-M-pyrifera_M_contig12302:1000..1100Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12302 1001..1100 +
1622815749.443635-UTR-M-pyrifera_M_contig12302:1406..14731622815749.443635-UTR-M-pyrifera_M_contig12302:1406..1473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12302 1407..1473 +
1692277551.4550438-UTR-M-pyrifera_M_contig12302:1406..14731692277551.4550438-UTR-M-pyrifera_M_contig12302:1406..1473Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig12302 1407..1473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815749.4309433-CDS-M-pyrifera_M_contig12302:1100..14061622815749.4309433-CDS-M-pyrifera_M_contig12302:1100..1406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12302 1101..1406 +
1692277551.445695-CDS-M-pyrifera_M_contig12302:1100..14061692277551.445695-CDS-M-pyrifera_M_contig12302:1100..1406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig12302 1101..1406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig12302.4733.1

>prot_M-pyrifera_M_contig12302.4733.1 ID=prot_M-pyrifera_M_contig12302.4733.1|Name=mRNA_M-pyrifera_M_contig12302.4733.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
MPRCFVVRVTRYVYDEYVPAYSGTNQSRAYVRRKDRLVFCCRYPKTLLVF
PARVISFSAFVGAQSTMACLYVRRCMHRPITLASPACRCTRIFVLCCRVF
S*
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mRNA from alignment at M-pyrifera_M_contig12302:1001..1473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig12302.4733.1 ID=mRNA_M-pyrifera_M_contig12302.4733.1|Name=mRNA_M-pyrifera_M_contig12302.4733.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=473bp|location=Sequence derived from alignment at M-pyrifera_M_contig12302:1001..1473+ (Macrocystis pyrifera P11B4 male)
GGGACGGGGCATCTCGCGCGGCTCACTGGTGGGCAGGCACTGGGTTTTGT
TTATTTGCTCTAGAGATTGACGAGACATCGGCGATACACGTGTGGGGAAA
ATGCCGCGTTGCTTTGTCGTTCGAGTAACGCGCTACGTATACGATGAGTA
CGTACCTGCGTACTCCGGGACCAATCAAAGTCGTGCGTACGTACGACGTA
AGGACCGTTTGGTTTTTTGTTGTCGATACCCAAAAACCTTGCTTGTTTTT
CCGGCGAGAGTGATATCGTTCTCCGCCTTCGTTGGGGCTCAATCAACCAT
GGCTTGCCTGTATGTTCGCAGGTGCATGCACCGTCCCATCACCTTGGCTT
CGCCGGCTTGCAGGTGCACTCGTATTTTCGTTTTGTGCTGTCGCGTCTTC
TCATAACGCTCTTGCGTAGCTTCGATAGAGAGACCCTGCTTTCGCTGCTG
CTCTCTGTTTTTGTTTACTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig12302:1001..1473+

>mRNA_M-pyrifera_M_contig12302.4733.1 ID=mRNA_M-pyrifera_M_contig12302.4733.1|Name=mRNA_M-pyrifera_M_contig12302.4733.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig12302:1001..1473+ (Macrocystis pyrifera P11B4 male)
ATGCCGCGTTGCTTTGTCGTTCGAGTAACGCGCTACGTATACGATGAGTA
CGTACCTGCGTACTCCGGGACCAATCAAAGTCGTGCGTACGTACGACGTA
AGGACCGTTTGGTTTTTTGTTGTCGATACCCAAAAACCTTGCTTGTTTTT
CCGGCGAGAGTGATATCGTTCTCCGCCTTCGTTGGGGCTCAATCAACCAT
GGCTTGCCTGTATGTTCGCAGGTGCATGCACCGTCCCATCACCTTGGCTT
CGCCGGCTTGCAGGTGCACTCGTATTTTCGTTTTGTGCTGTCGCGTCTTC
TCATAAATGCCGCGTTGCTTTGTCGTTCGAGTAACGCGCTACGTATACGA
TGAGTACGTACCTGCGTACTCCGGGACCAATCAAAGTCGTGCGTACGTAC
GACGTAAGGACCGTTTGGTTTTTTGTTGTCGATACCCAAAAACCTTGCTT
GTTTTTCCGGCGAGAGTGATATCGTTCTCCGCCTTCGTTGGGGCTCAATC
AACCATGGCTTGCCTGTATGTTCGCAGGTGCATGCACCGTCCCATCACCT
TGGCTTCGCCGGCTTGCAGGTGCACTCGTATTTTCGTTTTGTGCTGTCGC
GTCTTCTCATAA
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