mRNA_M-pyrifera_M_contig122991.4724.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122991.4724.1
Unique NamemRNA_M-pyrifera_M_contig122991.4724.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A372RT60_9GLOM (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-domain-containing protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=A0A372RT60_9GLOM)

HSP 1 Score: 92.0 bits (227), Expect = 2.700e-22
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            WG  L+ A+   FV +M+ +V  K +PETGN+ +D+++ D YYC LVP+T+PVT +AV+ NWLGMKFFRHN
Sbjct:   59 WGWFLLFAAYFIFVFSMYAIVVSKFVPETGNKTLDWIKKDEYYCLLVPLTLPVTIYAVFFNWLGMKFFRHN 129          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A397TBE7_9GLOM (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TBE7_9GLOM)

HSP 1 Score: 91.7 bits (226), Expect = 3.170e-22
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            WG  L+ A+   FV++M+ +V  K +PETGN+ +D+++ D YYC L+P+T+PVT +A++ NWLGMKFFRHN
Sbjct:   52 WGWFLLFAAYFIFVVSMYAIVVSKFVPETGNKTLDWIKKDEYYCLLIPLTLPVTIYAIFFNWLGMKFFRHN 122          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: Q54MF4_DICDI (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54MF4_DICDI)

HSP 1 Score: 92.8 bits (229), Expect = 5.590e-22
Identity = 36/71 (50.70%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            +G  +++ + +FF+++ +C+V  KLLP+TGN ++DF++ D+YYC LVP+ IPVT   VY NWL +KFFRHN
Sbjct:  115 YGWIIIICTLTFFIISTYCLVFSKLLPDTGNRILDFIKYDWYYCLLVPVIIPVTIITVYFNWLSLKFFRHN 185          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A2Z6QYY8_9GLOM (Transmembrane protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QYY8_9GLOM)

HSP 1 Score: 89.0 bits (219), Expect = 4.180e-21
Identity = 35/71 (49.30%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            WG  ++ A+   FV +++ +V  K +PETGN+ +D+++ D YYC L+P+T+PVT +A++ NWLGMKFFRHN
Sbjct:   57 WGWFILFAAYFIFVFSVYAIVVSKFVPETGNKTLDWIKKDEYYCLLIPLTLPVTIYAIFFNWLGMKFFRHN 127          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: F0ZA67_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZA67_DICPU)

HSP 1 Score: 89.0 bits (219), Expect = 5.590e-21
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            +G  +++ + +FF++  +C++  KLLP+TGN ++DF++ D+YYC L+P  +PVT   VY NWL +KFFRHN
Sbjct:   68 YGWIIIICTLTFFIVTTYCLIFSKLLPDTGNRILDFIKYDWYYCLLIPALVPVTVATVYFNWLSLKFFRHN 138          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: UPI000644E2F9 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E2F9)

HSP 1 Score: 89.4 bits (220), Expect = 2.680e-20
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            +G  +++ +  FF+ + +C+V  KLLP+TGN ++DF++ D+YYC L+P+ IPVT   VYLNWL +KFFRHN
Sbjct:  150 YGWFVILCTLVFFLFSTYCLVISKLLPDTGNRILDFIKYDWYYCLLLPVIIPVTIITVYLNWLSLKFFRHN 220          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: D3BNN2_POLPP (Transmembrane protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BNN2_POLPP)

HSP 1 Score: 88.2 bits (217), Expect = 1.160e-19
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            +G  +++ +  FF+   +C+V  K LP+TGN ++DF++ D+YYC L+P+ +PVT   VYLNWL +KFFRHN
Sbjct:  173 YGWLVILCTLIFFIFTTYCLVISKFLPDTGNRILDFIKYDWYYCLLLPVLVPVTIITVYLNWLSLKFFRHN 243          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A1Y1Z6F4_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z6F4_9FUNG)

HSP 1 Score: 84.0 bits (206), Expect = 1.200e-19
Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            WG  L++A+   FVL M+ +V  KL+P TGN+ +D+++ D YYC L+P+T  V+ +AV+ NW+GMKFFRHN
Sbjct:   13 WGYVLLIATYVLFVLFMYAIVVSKLMPYTGNKYLDWIKEDTYYCLLIPVTWFVSVYAVFWNWMGMKFFRHN 83          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A397U052_9GLOM (Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U052_9GLOM)

HSP 1 Score: 84.7 bits (208), Expect = 1.890e-19
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            WG  L+  +   FV +M+ +V  K +PETGN+ +D+++ D YYC L+P+T+ VT +A++ NWLGMKFFRHN
Sbjct:   56 WGWILLFTAYCIFVGSMYAIVVSKFMPETGNKTLDWIKVDEYYCLLIPITLLVTIYAIFWNWLGMKFFRHN 126          
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Match: A0A151ZHZ4_9MYCE (Ubiquitin domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZHZ4_9MYCE)

HSP 1 Score: 86.7 bits (213), Expect = 3.440e-19
Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   13 WGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTLVPMTIPVTFFAVYLNWLGMKFFRHN 225
            +G  +++ +  FF++  +C+V  KLLP++GN ++DF++ D+YYC L+P  +PVT   VY NWL +KFFRHN
Sbjct:  158 YGWVIILCTLIFFIVTSYCLVFSKLLPDSGNRVLDFIKHDWYYCLLIPALVPVTIITVYFNWLSLKFFRHN 228          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122991.4724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A372RT60_9GLOM2.700e-2254.93Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A397TBE7_9GLOM3.170e-2252.11Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
Q54MF4_DICDI5.590e-2250.70Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A2Z6QYY8_9GLOM4.180e-2149.30Transmembrane protein n=1 Tax=Rhizophagus clarus T... [more]
F0ZA67_DICPU5.590e-2146.48Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
UPI000644E2F92.680e-2050.70hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BNN2_POLPP1.160e-1947.89Transmembrane protein n=1 Tax=Polysphondylium pall... [more]
A0A1Y1Z6F4_9FUNG1.200e-1950.70Uncharacterized protein (Fragment) n=1 Tax=Basidio... [more]
A0A397U052_9GLOM1.890e-1949.30Phosphatidylinositol N-acetylglucosaminyltransfera... [more]
A0A151ZHZ4_9MYCE3.440e-1946.48Ubiquitin domain-containing protein n=1 Tax=Tieghe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122991contigM-pyrifera_M_contig122991:53..385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog44689.DDB0235232
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
EggNOG OGs2CZBD@1,2S9HF@2759,3XHDP@554915
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size228
Cds size228
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.9166129-CDS-M-pyrifera_M_contig122991:52..1141622815748.9166129-CDS-M-pyrifera_M_contig122991:52..114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122991 53..114 +
1692277551.2099333-CDS-M-pyrifera_M_contig122991:52..1141692277551.2099333-CDS-M-pyrifera_M_contig122991:52..114Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122991 53..114 +
1622815748.9327943-CDS-M-pyrifera_M_contig122991:219..3851622815748.9327943-CDS-M-pyrifera_M_contig122991:219..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122991 220..385 +
1692277551.2218533-CDS-M-pyrifera_M_contig122991:219..3851692277551.2218533-CDS-M-pyrifera_M_contig122991:219..385Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122991 220..385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122991.4724.1prot_M-pyrifera_M_contig122991.4724.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122991 53..385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122991.4724.1

>prot_M-pyrifera_M_contig122991.4724.1 ID=prot_M-pyrifera_M_contig122991.4724.1|Name=mRNA_M-pyrifera_M_contig122991.4724.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
MSRAWGVCLVVASASFFVLAMFCMVAVKLLPETGNELIDFLRTDYYYCTL
VPMTIPVTFFAVYLNWLGMKFFRHN*
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mRNA from alignment at M-pyrifera_M_contig122991:53..385+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122991.4724.1 ID=mRNA_M-pyrifera_M_contig122991.4724.1|Name=mRNA_M-pyrifera_M_contig122991.4724.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig122991:53..385+ (Macrocystis pyrifera P11B4 male)
ATGTCCAGGGCCTGGGGCGTGTGTCTCGTGGTGGCGTCGGCCTCGTTCTT CGTCCTAGCGATGTAAGATGCGAAGTTTGAGGGGTATTAGGGGGAGAGAA GAGGGGGGTGAGGGAGGTGGTGGGGGGTAATGTTGCTGGGGAGCATCGAG AAATGTTGCAAATGCAGGTTTTGTATGGTTGCCGTGAAATTGCTGCCGGA GACGGGAAATGAACTCATCGATTTCCTAAGAACTGACTATTATTATTGTA CCTTGGTGCCTATGACCATACCAGTCACGTTCTTTGCTGTGTACTTGAAT TGGCTGGGAATGAAGTTTTTCAGACACAATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122991:53..385+

>mRNA_M-pyrifera_M_contig122991.4724.1 ID=mRNA_M-pyrifera_M_contig122991.4724.1|Name=mRNA_M-pyrifera_M_contig122991.4724.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig122991:53..385+ (Macrocystis pyrifera P11B4 male)
ATGTCCAGGGCCTGGGGCGTGTGTCTCGTGGTGGCGTCGGCCTCGTTCTT
CGTCCTAGCGATATGTCCAGGGCCTGGGGCGTGTGTCTCGTGGTGGCGTC
GGCCTCGTTCTTCGTCCTAGCGATGTTTTGTATGGTTGCCGTGAAATTGC
TGCCGGAGACGGGAAATGAACTCATCGATTTCCTAAGAACTGACTATTAT
TATTGTACCTTGGTGCCTATGACCATACCAGTCACGTTCTTTGCTGTGTA
CTTGAATTGGCTGGGAATGAAGTTTTTCAGACACAATTGAGTTTTGTATG
GTTGCCGTGAAATTGCTGCCGGAGACGGGAAATGAACTCATCGATTTCCT
AAGAACTGACTATTATTATTGTACCTTGGTGCCTATGACCATACCAGTCA
CGTTCTTTGCTGTGTACTTGAATTGGCTGGGAATGAAGTTTTTCAGACAC
AATTGA
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