mRNA_M-pyrifera_M_contig122949.4714.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122949.4714.1
Unique NamemRNA_M-pyrifera_M_contig122949.4714.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A2D8CI79_9BACT (LTD domain-containing protein n=3 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CI79_9BACT)

HSP 1 Score: 126 bits (316), Expect = 6.370e-31
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1
Query:   55 YSGSLTEFIDHDWLTYWVEAEDTDGETNQ--SNSKVF---NLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            YSGS+    +    ++++ AED    +++  +NS  F      +S NS++INEF+ DNE+GIQDE D F+DW+ELYNPT+  I L+D++LTDDF+D  KWA PDT I  G  +LIWAD+++EEG+LHTN
Sbjct:  486 YSGSIILDENIGDFSFYMMAEDEQALSSRYPNNSDRFLNYEFLASKNSLLINEFLTDNETGIQDESDSFEDWVELYNPTENSISLSDYFLTDDFDDPTKWAFPDTSIPAGGHLLIWADNDEEEGLLHTN 614          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A359E999_9BACT (LTD domain-containing protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A359E999_9BACT)

HSP 1 Score: 124 bits (312), Expect = 1.360e-30
Identity = 64/129 (49.61%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   55 YSGSLTEFIDHDWLTYWVEAEDTDGETNQ--SNSKVF---NLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            YSGS+    +    ++++ AED    +++  +NS  F      +S NS++INEF+ DNE+GIQDE D F+DW+ELYNPT+  I L+D++LTDDF D  KWA PDT I  G  +LIWAD+++EEG+LHTN
Sbjct:  400 YSGSIILDENIGDFSFYMMAEDEQALSSRYPNNSDRFLNYEFLASKNSLLINEFLTDNETGIQDESDSFEDWVELYNPTENSISLSDYFLTDDFYDPTKWAFPDTSIPAGGHLLIWADNDEEEGLLHTN 528          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A7C5HDR4_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7C5HDR4_9BACT)

HSP 1 Score: 108 bits (269), Expect = 1.590e-25
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 ITLSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDG--ETNQSNSKVFNLKSSIN----SIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKW-----ALPD-TIIQPGHFILIWADSEDEEGILH 420
            IT+ D+G + D GA D IY G + +      + Y++EA D      T   N+     +  ++     I INEFMADNES I D  ++++DWIE+YN ++EPI +   Y TD+F +   W     + PD T IQPG+F+L+WAD++ E+GILH
Sbjct:   23 ITMYDDGQHGDSGANDNIYGGYIPQLPSGTSVNYYLEATDDMSAVSTYPENAPDLTFQYVVDYDPPQIFINEFMADNESFITDPQEEYEDWIEIYNASEEPIDIGGLYFTDNFSNPTDWWKIPESYPDSTTIQPGNFLLLWADNDSEDGILH 174          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A2A5XW88_9BACT (LTD domain-containing protein n=1 Tax=Rhodothermaeota bacterium MED-G12 TaxID=1986237 RepID=A0A2A5XW88_9BACT)

HSP 1 Score: 109 bits (273), Expect = 4.060e-25
Identity = 53/116 (45.69%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   94 LTYWVEAEDTDGETNQ-----SNSKVFNLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            L Y + A   DG   +      N +   ++     ++INE MADNE+ +QD Y  F+DW+ELYNP   P++L+ +YLTDD  +  KWALPDT +Q G ++LIW D++DEEG LHTN
Sbjct:  542 LRYALHARSNDGGVKRYPRATENYRSLAVQRPSEKLLINELMADNETTLQDPYGAFEDWVELYNPGASPVNLSGYYLTDDLSNPGKWALPDTQLQAGGYLLIWTDNDDEEGSLHTN 657          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A2N2WJJ3_9BACT (LTD domain-containing protein n=1 Tax=Bacteroidetes bacterium HGW-Bacteroidetes-9 TaxID=2013699 RepID=A0A2N2WJJ3_9BACT)

HSP 1 Score: 108 bits (271), Expect = 7.450e-25
Identity = 61/143 (42.66%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 LSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQSNSKVFNLK---SSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            + D+G N D  A D IYS SL+    +  + + ++A D    T          K    ++ ++ INEFMA N S I DE  ++DDWIELYN  +  I L D YLTD+    +KWALPDT I PG F+L+WAD + E+G +HTN
Sbjct:  474 MHDDGQNGDLMADDHIYSVSLSGMEGNTLIEFSIKATDNSQLTTIRPCSPIQYKIPSGNVYNLYINEFMASNSSTITDENGEYDDWIELYNAGNSTIWLGDKYLTDNLSSPVKWALPDTTIAPGSFMLVWADGQPEQGQIHTN 616          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A2E6N5Z0_9BACT (LTD domain-containing protein n=2 Tax=Balneola sp. TaxID=2024824 RepID=A0A2E6N5Z0_9BACT)

HSP 1 Score: 106 bits (265), Expect = 4.840e-24
Identity = 51/116 (43.97%), Postives = 74/116 (63.79%), Query Frame = 1
Query:   94 LTYWVEAEDTDGETNQS-----NSKVFNLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            L Y + A   DG   +      N ++  ++     ++INE M+DNE+ I+D +D F+DW+E+YNP    I L+ +YLTDD  +  KWALPDT +  G+++LIWAD +DEEG LHTN
Sbjct:  538 LNYALHARSNDGGVKRFPRATVNYRIHTVQKLSKKLLINELMSDNETTIRDPFDVFEDWVEIYNPGSSNIELSGYYLTDDLNNPGKWALPDTQLLAGNYLLIWADDDDEEGSLHTN 653          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A3M1Z7U4_9BACT (LTD domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1Z7U4_9BACT)

HSP 1 Score: 106 bits (264), Expect = 6.560e-24
Identity = 55/142 (38.73%), Postives = 84/142 (59.15%), Query Frame = 1
Query:   13 DNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQS----NSKVFNLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            D+G + D  A DGI+   L        L Y+++A D DG+T +     N K++ L      I+INE M  N+  I D Y +FDDWIELYNPT+ P+ L +++L+D+ +   KW LP+T + P  ++L+WAD ++ +G  H N
Sbjct:  488 DDGLHDDDQAGDGIFGAILPALHQQTTLEYYIQATDADGKTARQPICQNLKIY-LGPINPGIVINEVMPKNDQTIADPYGEFDDWIELYNPTNTPVFLGNYFLSDNPDKPDKWRLPETFLTPNAYLLVWADKDEAQGNTHAN 628          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A7C5HL48_9BACT (Lamin tail domain-containing protein n=1 Tax=Candidatus Cloacimonetes bacterium TaxID=2030808 RepID=A0A7C5HL48_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.020e-23
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 ITLSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQ--SNSKVFNLKSSIN--SIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKW-ALPDT-----IIQPGHFILIWADSEDEEGILH 420
            I + DNG N D  A D +Y   +T+ I    ++Y++EAED +    +   N+ +   +   N  S+ INEF+A N +  QD   ++DDWIE+YN ++E I+++  Y+TDD  D   W  +P+T      IQPG FIL+WAD++  +GILH
Sbjct:   25 IYMFDNGQNNDGFAGDAVYGCYITQQISGTIVSYYIEAEDNEQVITRFPENNNLIEYEVDYNCPSLFINEFLALNRTTNQDPEGEYDDWIEIYNASEEAINISGMYITDDLTDHSHWYQIPETNPDSTTIQPGDFILLWADNDSADGILH 174          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A350BV52_9BACT (LTD domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A350BV52_9BACT)

HSP 1 Score: 103 bits (257), Expect = 5.710e-23
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 ITLSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQSNSKVFNLKS--SINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            + + D+G   D  A DGIY  S++    +  L Y+V AE+    T   ++  +N      +  ++INEF A N + I DE   F+DWIEL+N  D  I+L  ++L+DD  D  +W LP+  I  G + LIWAD+++E+GILHTN
Sbjct:  464 MEMKDDGLAGDDQAMDGIYGASISSSSAN--LDYYVYAENDSAGTFSPSNAAYNFYEIREVKQLVINEFCASNSTIISDENGQFEDWIELFNNGDTTINLLGYFLSDDINDLGQWGLPEISIAAGEYALIWADNDEEDGILHTN 605          
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Match: A0A848UUH0_9FLAO (T9SS type A sorting domain-containing protein n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A848UUH0_9FLAO)

HSP 1 Score: 101 bits (251), Expect = 8.410e-23
Identity = 60/143 (41.96%), Postives = 81/143 (56.64%), Query Frame = 1
Query:    1 ITLSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQSNSKVFNLKSSIN-SIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTDFYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN 426
            ++L DNG+N D+ A DG ++  L      D L Y +      GE            S  N  +++NE MA N +   DE   F+DWIEL+N +D  I+L D YLTDD ++ L+W +PD  I PG FIL WAD + +EGILHTN
Sbjct:   81 VSLWDNGTNGDQVAEDGTWTYFLNLDDWMDQLEYQMIGYHAGGEIIAPCEPQLVWTSPNNIGLVVNEVMASNATTNWDETGAFEDWIELFNDSDNAIYLGDKYLTDDIDNPLRWKMPDVTIDPGGFILFWADKDLDEGILHTN 223          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122949.4714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8CI79_9BACT6.370e-3149.61LTD domain-containing protein n=3 Tax=Balneolaceae... [more]
A0A359E999_9BACT1.360e-3049.61LTD domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A7C5HDR4_9BACT1.590e-2540.13T9SS type A sorting domain-containing protein n=1 ... [more]
A0A2A5XW88_9BACT4.060e-2545.69LTD domain-containing protein n=1 Tax=Rhodothermae... [more]
A0A2N2WJJ3_9BACT7.450e-2542.66LTD domain-containing protein n=1 Tax=Bacteroidete... [more]
A0A2E6N5Z0_9BACT4.840e-2443.97LTD domain-containing protein n=2 Tax=Balneola sp.... [more]
A0A3M1Z7U4_9BACT6.560e-2438.73LTD domain-containing protein n=1 Tax=Bacteroidete... [more]
A0A7C5HL48_9BACT2.020e-2338.67Lamin tail domain-containing protein n=1 Tax=Candi... [more]
A0A350BV52_9BACT5.710e-2338.89LTD domain-containing protein n=1 Tax=Bacteroidete... [more]
A0A848UUH0_9FLAO8.410e-2341.96T9SS type A sorting domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122949contigM-pyrifera_M_contig122949:101..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.9
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog1122179.KB890435_gene931
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG5337 Spore coat assembly protein
EggNOG OGs4NI4U@976,COG5337@1,COG5337@2
COG Functional cat.M
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size426
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.5094564-CDS-M-pyrifera_M_contig122949:100..5261622815748.5094564-CDS-M-pyrifera_M_contig122949:100..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122949 101..526 +
1692277551.027582-CDS-M-pyrifera_M_contig122949:100..5261692277551.027582-CDS-M-pyrifera_M_contig122949:100..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122949 101..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122949.4714.1prot_M-pyrifera_M_contig122949.4714.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122949 101..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122949.4714.1

>prot_M-pyrifera_M_contig122949.4714.1 ID=prot_M-pyrifera_M_contig122949.4714.1|Name=mRNA_M-pyrifera_M_contig122949.4714.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=142bp
ITLSDNGSNIDKGAYDGIYSGSLTEFIDHDWLTYWVEAEDTDGETNQSNS
KVFNLKSSINSIIINEFMADNESGIQDEYDDFDDWIELYNPTDEPIHLTD
FYLTDDFEDELKWALPDTIIQPGHFILIWADSEDEEGILHTN
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mRNA from alignment at M-pyrifera_M_contig122949:101..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122949.4714.1 ID=mRNA_M-pyrifera_M_contig122949.4714.1|Name=mRNA_M-pyrifera_M_contig122949.4714.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig122949:101..526+ (Macrocystis pyrifera P11B4 male)
ATAACTCTTTCTGATAATGGCTCTAACATTGATAAAGGGGCCTATGATGG GATTTATTCTGGCTCATTAACTGAATTTATTGATCACGATTGGCTTACTT ATTGGGTTGAAGCGGAAGATACAGATGGGGAAACTAATCAATCGAATAGT AAAGTTTTTAATCTCAAATCTTCTATCAATTCAATTATTATTAACGAATT TATGGCAGATAACGAGTCTGGAATTCAGGATGAATATGATGATTTTGATG ATTGGATTGAATTGTACAACCCAACGGATGAACCCATACATTTAACCGAT TTTTATCTCACTGATGATTTTGAAGACGAACTAAAGTGGGCGTTACCTGA TACTATTATACAACCCGGTCATTTCATACTTATTTGGGCGGATAGCGAGG ACGAAGAAGGAATTTTACACACTAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122949:101..526+

>mRNA_M-pyrifera_M_contig122949.4714.1 ID=mRNA_M-pyrifera_M_contig122949.4714.1|Name=mRNA_M-pyrifera_M_contig122949.4714.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=852bp|location=Sequence derived from alignment at M-pyrifera_M_contig122949:101..526+ (Macrocystis pyrifera P11B4 male)
ATAACTCTTTCTGATAATGGCTCTAACATTGATAAAGGGGCCTATGATGG
GATTTATTCTGGCTCATTAACTGAATTTATTGATCACGATTGGCTTACTT
ATTGGGTTGAAGCGGAAGATACAGATGGGGAAACTAATCAATCGAATAGT
AAAGTTTTTAATCTCAAATCTTCTATCAATTCAATTATTATTAACGAATT
TATGGCAGATAACGAGTCTGGAATTCAGGATGAATATGATGATTTTGATG
ATTGGATTGAATTGTACAACCCAACGGATGAACCCATACATTTAACCGAT
TTTTATCTCACTGATGATTTTGAAGACGAACTAAAGTGGGCGTTACCTGA
TACTATTATACAACCCGGTCATTTCATACTTATTTGGGCGGATAGCGAGG
ACGAAGAAGGAATTTTACACACTAATATAACTCTTTCTGATAATGGCTCT
AACATTGATAAAGGGGCCTATGATGGGATTTATTCTGGCTCATTAACTGA
ATTTATTGATCACGATTGGCTTACTTATTGGGTTGAAGCGGAAGATACAG
ATGGGGAAACTAATCAATCGAATAGTAAAGTTTTTAATCTCAAATCTTCT
ATCAATTCAATTATTATTAACGAATTTATGGCAGATAACGAGTCTGGAAT
TCAGGATGAATATGATGATTTTGATGATTGGATTGAATTGTACAACCCAA
CGGATGAACCCATACATTTAACCGATTTTTATCTCACTGATGATTTTGAA
GACGAACTAAAGTGGGCGTTACCTGATACTATTATACAACCCGGTCATTT
CATACTTATTTGGGCGGATAGCGAGGACGAAGAAGGAATTTTACACACTA
AT
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