mRNA_M-pyrifera_M_contig122947.4712.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122947.4712.1
Unique NamemRNA_M-pyrifera_M_contig122947.4712.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A2Z6RIK6_9GLOM (Mitotic checkpoint protein BUB3-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RIK6_9GLOM)

HSP 1 Score: 113 bits (283), Expect = 3.060e-30
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 QRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +++AFKCHR+  DGVD VYPVN L FHPTHGT A+ GADG V++WD   KK + Q   YPTS+ASL FS DG   A+A +YT+E+GEK+
Sbjct:   30 RKYAFKCHRKVIDGVDTVYPVNALAFHPTHGTFASGGADGIVNIWDGFNKKRLRQYPQYPTSIASLDFSRDGQYLAIASSYTFEEGEKD 118
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BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A2V0NS07_9CHLO (Mitotic checkpoint protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NS07_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 6.210e-30
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    7 RFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGE 264
            ++AFKCHRRNE G D VYPV+ + +HP HGT AT G DG V++WD D KK + Q+A YPTSVASLAFS DGAL AVA +Y  E+GE
Sbjct:  220 KYAFKCHRRNEGGRDAVYPVHAIAYHPVHGTFATGGGDGVVNVWDGDNKKRLFQVAPYPTSVASLAFSADGALLAVAASYCHERGE 305
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BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: UPI001C1B71C5 (Hypothetical protein n=3 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1B71C5)

HSP 1 Score: 113 bits (283), Expect = 8.530e-30
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 QRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +++AFKCHR+  DGVD VYPVN L FHPTHGT A+ GADG V++WD   KK + Q   YPTS+ASL FS DG   A+A +YT+E+GEK+
Sbjct:   37 RKYAFKCHRKVIDGVDTVYPVNALAFHPTHGTFASGGADGMVNIWDGFNKKRLRQYPQYPTSIASLDFSRDGQYLAIASSYTFEEGEKD 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A4P9Y269_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y269_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 4.660e-29
Identity = 56/90 (62.22%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    4 QRFAFKCHRRN-EDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +++AFKCHR+   DGVDVVYPVN L FHPTHGT A+ G+DG V +WD  KKK V QL  Y TSVASL FSPDG   AVA +YT+++GE++
Sbjct:  222 KKYAFKCHRQTGPDGVDVVYPVNALAFHPTHGTFASGGSDGVVHVWDGKKKKRVRQLPRYTTSVASLDFSPDGTRLAVAASYTFDEGERD 311
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BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A6T7WF00_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A6T7WF00_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 6.220e-29
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:    4 QRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQG 261
            +++AFKC+R++E G D+VYPVN L FHPTHGT  + G DG V++WD   KK + Q A YPTS+++LAFS DGAL AVA +YT+E G
Sbjct:    1 KKYAFKCYRKSEGGRDIVYPVNTLAFHPTHGTFVSGGCDGLVNIWDGANKKRLHQYAPYPTSISALAFSADGALLAVASSYTFELG 86
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A6G3MMG1_HENSL (Mitotic checkpoint protein BUB3 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MMG1_HENSL)

HSP 1 Score: 109 bits (273), Expect = 6.560e-29
Identity = 48/90 (53.33%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    4 QRFAFKCHRRN-EDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +++AFKCHR    DG ++++PVN + FHPTHGT AT G+DG VS+WD   KK +CQL  +PTS++SL+FS DG++ A+A +Y +E+ EKE
Sbjct:   18 KKYAFKCHRSTGNDGFEIIHPVNAVSFHPTHGTFATGGSDGMVSIWDPFNKKRICQLHRFPTSISSLSFSSDGSMLAIASSYQYEENEKE 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A7S1SS84_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SS84_9CHLO)

HSP 1 Score: 114 bits (286), Expect = 9.670e-29
Identity = 52/90 (57.78%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 TQRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            T+++AFKCHRR E+G DVVYPVN + FH  HGT AT G DG V++WD + KK + Q   YPTS+A+L+F+  G+L AVA +YT+EQGEK+
Sbjct:  222 TRKYAFKCHRRQENGKDVVYPVNSISFHREHGTFATGGCDGIVNVWDGENKKRLYQYQRYPTSIAALSFNRSGSLLAVASSYTYEQGEKD 311
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A812W6H0_SYMMI (BUB3.1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W6H0_SYMMI)

HSP 1 Score: 114 bits (284), Expect = 1.360e-28
Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   10 FAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +AFKCHRR     DV YPVN + FHP  GT AT G DGTV++WD D KK +CQL  YPTS+ASLAFS DG++ A+A +YT+E+GEK+
Sbjct:  207 YAFKCHRRG----DVAYPVNAIAFHPVFGTFATGGGDGTVNVWDGDNKKKLCQLHQYPTSIASLAFSRDGSMLAIASSYTFEEGEKQ 289
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: A0A433QNC4_9FUNG (WD40-repeat-containing domain protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QNC4_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 2.410e-28
Identity = 55/90 (61.11%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 TQRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            ++++AFKCHR+  DGVD VYPVN L F+P HGT A+ GADG V++WD   KK + Q   YPTSVASLAFS DG L AVA +YT+E+GEK+
Sbjct:  218 SRKYAFKCHRQVIDGVDTVYPVNALAFNPVHGTFASGGADGVVNVWDRWNKKRLRQYPRYPTSVASLAFSHDGRLLAVASSYTFEEGEKD 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Match: U9THX1_RHIID (Mitotic checkpoint protein BUB3 n=7 Tax=Glomeraceae TaxID=36751 RepID=U9THX1_RHIID)

HSP 1 Score: 113 bits (283), Expect = 2.490e-28
Identity = 53/89 (59.55%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    4 QRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDKKKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKE 270
            +++AFKCHR+  DGVD VYPVN L FHPTHGT A+ GADG V++WD   KK + Q   YPTS+ASL FS DG   A+A +YT+E+GEK+
Sbjct:  219 RKYAFKCHRKVIDGVDTVYPVNALAFHPTHGTFASGGADGMVNIWDGFNKKRLRQYPQYPTSIASLDFSRDGQYLAIASSYTFEEGEKD 307
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122947.4712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6RIK6_9GLOM3.060e-3059.55Mitotic checkpoint protein BUB3-like n=1 Tax=Rhizo... [more]
A0A2V0NS07_9CHLO6.210e-3063.95Mitotic checkpoint protein n=1 Tax=Raphidocelis su... [more]
UPI001C1B71C58.530e-3059.55Hypothetical protein n=3 Tax=Rhizophagus irregular... [more]
A0A4P9Y269_9FUNG4.660e-2962.22WD40-repeat-containing domain protein n=1 Tax=Pipt... [more]
A0A6T7WF00_9CHLO6.220e-2958.14Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A6G3MMG1_HENSL6.560e-2953.33Mitotic checkpoint protein BUB3 (Trinotate predict... [more]
A0A7S1SS84_9CHLO9.670e-2957.78Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A812W6H0_SYMMI1.360e-2860.92BUB3.1 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A433QNC4_9FUNG2.410e-2861.11WD40-repeat-containing domain protein n=2 Tax=Jimg... [more]
U9THX1_RHIID2.490e-2859.55Mitotic checkpoint protein BUB3 n=7 Tax=Glomeracea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122947contigM-pyrifera_M_contig122947:154..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score123.2
Seed ortholog evalue6.5e-26
Seed eggNOG ortholog248742.XP_005648737.1
KEGG koko:K02180
KEGG Pathwayko04110,ko04111,ko05166,map04110,map04111,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000075,GO:0000151,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0000819,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005819,GO:0005828,GO:0005856,GO:0005874,GO:0005876,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008608,GO:0009524,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0016043,GO:0022402,GO:0030071,GO:0031461,GO:0031577,GO:0031974,GO:0031981,GO:0032182,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033597,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070013,GO:0071173,GO:0071174,GO:0071840,GO:0080008,GO:0098687,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1902494,GO:1903047,GO:1905818,GO:1905819,GO:1990234,GO:1990298,GO:2000816,GO:2001251
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs34IZQ@3041,37I3C@33090,KOG1036@1,KOG1036@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-15_003170.1
COG Functional cat.D
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko03041
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.409992-CDS-M-pyrifera_M_contig122947:153..3581622815748.409992-CDS-M-pyrifera_M_contig122947:153..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122947 154..358 -
1692277550.981615-CDS-M-pyrifera_M_contig122947:153..3581692277550.981615-CDS-M-pyrifera_M_contig122947:153..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122947 154..358 -
1622815748.4213955-CDS-M-pyrifera_M_contig122947:426..5151622815748.4213955-CDS-M-pyrifera_M_contig122947:426..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122947 427..515 -
1692277550.9974785-CDS-M-pyrifera_M_contig122947:426..5151692277550.9974785-CDS-M-pyrifera_M_contig122947:426..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122947 427..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122947.4712.1prot_M-pyrifera_M_contig122947.4712.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122947 154..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122947.4712.1

>prot_M-pyrifera_M_contig122947.4712.1 ID=prot_M-pyrifera_M_contig122947.4712.1|Name=mRNA_M-pyrifera_M_contig122947.4712.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
TQRFAFKCHRRNEDGVDVVYPVNDLVFHPTHGTLATCGADGTVSMWDVDK
KKMVCQLASYPTSVASLAFSPDGALAAVAVAYTWEQGEKEKCVAALPV
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mRNA from alignment at M-pyrifera_M_contig122947:154..515-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122947.4712.1 ID=mRNA_M-pyrifera_M_contig122947.4712.1|Name=mRNA_M-pyrifera_M_contig122947.4712.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=362bp|location=Sequence derived from alignment at M-pyrifera_M_contig122947:154..515- (Macrocystis pyrifera P11B4 male)
ACGCAGCGTTTTGCGTTCAAGTGCCACAGACGAAACGAGGACGGTGTGGA
CGTAGTGTACCCGGTGAACGACCTCGTGTTCCACCCTACGTGCGTTCGAG
AGCGTGTGCCGCGGGGCTGCGAGCAGTGTGCGTAGCTCACTGGCCGCCAC
CACGCAGACACGGCACGCTGGCCACTTGCGGAGCAGACGGGACCGTGTCG
ATGTGGGACGTGGACAAGAAGAAGATGGTGTGCCAGCTGGCGTCGTACCC
GACCAGCGTGGCATCTCTGGCGTTCAGCCCGGACGGCGCGCTGGCAGCCG
TTGCAGTGGCGTACACGTGGGAGCAGGGGGAGAAGGAGAAGTGCGTAGCG
GCGCTGCCTGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122947:154..515-

>mRNA_M-pyrifera_M_contig122947.4712.1 ID=mRNA_M-pyrifera_M_contig122947.4712.1|Name=mRNA_M-pyrifera_M_contig122947.4712.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig122947:154..515- (Macrocystis pyrifera P11B4 male)
ACGCAGCGTTTTGCGTTCAAGTGCCACAGACGAAACGAGGACGGTGTGGA
CGTAGTGTACCCGGTGAACGACCTCGTGTTCCACCCTACACGCAGCGTTT
TGCGTTCAAGTGCCACAGACGAAACGAGGACGGTGTGGACGTAGTGTACC
CGGTGAACGACCTCGTGTTCCACCCTACACACGGCACGCTGGCCACTTGC
GGAGCAGACGGGACCGTGTCGATGTGGGACGTGGACAAGAAGAAGATGGT
GTGCCAGCTGGCGTCGTACCCGACCAGCGTGGCATCTCTGGCGTTCAGCC
CGGACGGCGCGCTGGCAGCCGTTGCAGTGGCGTACACGTGGGAGCAGGGG
GAGAAGGAGAAGTGCGTAGCGGCGCTGCCTGTGACACGGCACGCTGGCCA
CTTGCGGAGCAGACGGGACCGTGTCGATGTGGGACGTGGACAAGAAGAAG
ATGGTGTGCCAGCTGGCGTCGTACCCGACCAGCGTGGCATCTCTGGCGTT
CAGCCCGGACGGCGCGCTGGCAGCCGTTGCAGTGGCGTACACGTGGGAGC
AGGGGGAGAAGGAGAAGTGCGTAGCGGCGCTGCCTGTG
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