mRNA_M-pyrifera_M_contig122928.4707.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122928.4707.1
Unique NamemRNA_M-pyrifera_M_contig122928.4707.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A7S4I8T8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8T8_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 2.500e-16
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    1 CTLNLYMLADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCIFAEENVFIE 330
            C+L+L    D A I   L  +   GL+LA GNEG  R   D+ + LYLSRN GVTW+R+ EG   F   ++GSLF++       +++ +SW+QG ++D C +  E + +E
Sbjct:  399 CSLHLSGPVDGAEI---LTSREIPGLLLASGNEGTVRLTRDDNVNLYLSRNSGVTWERVQEGPRVFNWGNYGSLFVSTTAASETSSVEFSWDQGKSWDSCEYYSEPMEVE 505          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: UPI000A2A7146 (sortilin-related receptor n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7146)

HSP 1 Score: 68.2 bits (165), Expect = 4.830e-11
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   43 TPMLADKNAVGLILAQGNEGY-YRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQG 282
            TPML+  +A G+++A G  G   + +AD    L++S NGG+TW+  ++GS+ + M  HG +F+A       +  +YSWN+G
Sbjct:  476 TPMLSSASAPGIVMAMGTPGKSLKLNAD----LFMSTNGGLTWEEALKGSYFYNMGDHGGVFIAVPRGAPTDLFYYSWNEG 552          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A6P8HAP6_ACTTE (VPS10 domain-containing receptor SorCS1-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HAP6_ACTTE)

HSP 1 Score: 66.6 bits (161), Expect = 1.650e-10
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1
Query:    1 CTLNLYMLADQA--TITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCIFAEENV 321
            C LNL+M+  +    I+ +L+ ++A+GLI+AQGN G Y  +  +   +YLS +GG+ W++++ GS  +    HG L +A         ++YS  +G  F   I  E+NV
Sbjct:  446 CGLNLHMVHSERYYQISSVLSSESALGLIMAQGNVGRYLNEETD---VYLSSDGGLHWNKILNGSHDYVFGDHGGLIVAVALGNYTKKVWYSCTEGK-FWSTIEMEKNV 550          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: I7M6Q8_TETTS (BNR/Asp-box protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M6Q8_TETTS)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-9
Identity = 33/112 (29.46%), Postives = 62/112 (55.36%), Query Frame = 1
Query:    1 CTLNLYMLADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLF--YSWNQGAAFDGCIFAEENVFIE 330
            C LN++  ++        + KNAVGL+LA GN G Y   +   +  YLSR+ G+TW ++  G++ F +  HGS+ + A++     T F  Y+ ++G  ++    ++ ++ I+
Sbjct:  461 CFLNIHSNSNDL-YNSFYSSKNAVGLVLANGNVGKYLSHSPTQVNTYLSRDAGLTWKQIKRGAYVFEIGDHGSIIVMAKDKDYGTTKFIEYTLDEGITWNQVQISDTDIEID 571          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A6P5A1Z3_BRABE (VPS10 domain-containing receptor SorCS3-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P5A1Z3_BRABE)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-8
Identity = 34/115 (29.57%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 CTLNLYMLADQAT--ITPMLADKNAVGLILAQGNEGYYRQDADE-ALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAA--ENDRANNTLFYSWNQGAAFDGCIFAEENVFIE 330
            C+L+L+M   +    I  +++ +++VGL++AQGN G    D D  +  +++S NGG+TWD+++E  +      HG   +A   E+ +  +TL YS  +G  ++   F +  + I+
Sbjct:  428 CSLHLHMDFSKTIYHIPSVMSRESSVGLVMAQGNVG---DDLDSISSDVFVSHNGGLTWDQVLEDRYYVVFTDHGGAIVAVKLESGKPTDTLEYSCTEGQKWESFKFTDTPLLID 539          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A7SK47_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SK47_NEMVE)

HSP 1 Score: 59.7 bits (143), Expect = 4.450e-8
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 1
Query:    1 CTLNLYMLADQA--TITPMLADKNAVGLILAQGNEGY-YRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQG 282
            C+LNL+M   Q    I  +++ K AVGLI+AQG  G  +  + +    +++SR+GG+TW R++ GS+ F +  HG +  A        T+ YS ++G
Sbjct:  451 CSLNLHMQHSQHYYQIPGIVSSKTAVGLIIAQGELGTSFTLNPN----VFMSRDGGLTWKRVLYGSYDFVLLDHGGIIAAVPLRNNTKTVQYSCSEG 543          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A1Y2HW46_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HW46_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 1.150e-7
Identity = 30/102 (29.41%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    1 CTLNLYML-ADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCI 303
            C L+L+ + A    +  M ++++A GL+   GN G +  D  +A  +++S +GGVTW+ + EG   + +   GSL +  + D   N L YS + G +++  +
Sbjct:  445 CALHLHSVTAGLGVVGKMFSERSAPGLLTGVGNVGTHLTDVRQAS-MFVSTDGGVTWNHVQEGVHHYRLLDSGSLLVLVDMDSVTNELLYSKDVGKSWNKVV 545          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A1X7VDR5_AMPQE (VPS10 domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VDR5_AMPQE)

HSP 1 Score: 57.8 bits (138), Expect = 2.060e-7
Identity = 33/114 (28.95%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    1 CTLNLYMLADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAEN-----DRANNTLFYSWNQGAAFDGCIFAEENVFI 327
            C+L+L+M + Q   T + +  +A G+I+A G  G    D++  LF+  SR+GGV+W+  ++ S+  ++  +G L +AA++        +  L YS N+G ++    F++ N  +
Sbjct:  416 CSLHLHMSSSQYWRTGVYSTASAPGIIIAHGVTGAKLNDSNVNLFI--SRDGGVSWNMTLKSSWGVSVLDYGGLIIAAQDYHQFQQTPSRRLAYSCNEGRSWSYFQFSQTNTVV 527          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A507FSJ8_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FSJ8_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 2.160e-7
Identity = 30/117 (25.64%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 CTLNLYMLADQAT-------ITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCIFAEENVFIE 330
            C LN+Y+    +T          +L   +A G ++A G+ G    DA +   +YL+++ G +W  + + + ++ +  HG++ +  +++RA +TL YSWN G ++    F+E+ + ++
Sbjct: 1106 CGLNIYLKIAGSTGHFGGEGKASVLTSAHAAGFMVAVGSIGS-SLDAYKESNMYLTKDAGRSWTEIRKDAHKWAIGDHGAMIVMVDDERATDTLVYSWNYGQSWATFKFSEKPIRVD 1221          
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Match: A0A6A5C6A9_NAEFO (VPS10 domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C6A9_NAEFO)

HSP 1 Score: 57.0 bits (136), Expect = 3.860e-7
Identity = 28/108 (25.93%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 CTLNL--YMLADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTWDRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCIFAEEN 318
            C LN+  +  +  +    +L+ K+AVG+ILA GN G Y     + +  Y+SR+GG++W  + +GS  + + +HG + +  +N++    + Y+ ++   +    F + +
Sbjct:  429 CYLNIHGFTASSSSNYVKILSHKDAVGIILANGNVGQYLDS--KIVNTYMSRDGGLSWFEIAKGSHLYEILNHGGILVTVKNNQPTVEIRYTLDEAETWITANFTDRS 534          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122928.4707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A7S4I8T8_9EUKA2.500e-1639.09Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI000A2A71464.830e-1137.04sortilin-related receptor n=1 Tax=Exaiptasia diaph... [more]
A0A6P8HAP6_ACTTE1.650e-1033.94VPS10 domain-containing receptor SorCS1-like n=1 T... [more]
I7M6Q8_TETTS1.050e-929.46BNR/Asp-box protein n=1 Tax=Tetrahymena thermophil... [more]
A0A6P5A1Z3_BRABE4.450e-829.57VPS10 domain-containing receptor SorCS3-like n=3 T... [more]
A7SK47_NEMVE4.450e-835.05Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A1Y2HW46_9FUNG1.150e-729.41Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A1X7VDR5_AMPQE2.060e-728.95VPS10 domain-containing protein n=1 Tax=Amphimedon... [more]
A0A507FSJ8_9FUNG2.160e-725.64Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A6A5C6A9_NAEFO3.860e-725.93VPS10 domain-containing protein n=2 Tax=Naegleria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122928contigM-pyrifera_M_contig122928:20..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue4.4e-12
Seed eggNOG ortholog5932.XP_004035806.1
Preferred nameVPS10
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005783,GO:0005794,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0007034,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0016482,GO:0031224,GO:0031410,GO:0031982,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708
EggNOG free text desc.VPS10
EggNOG OGs3ZBJD@5878,KOG3511@1,KOG3511@2759
COG Functional cat.U
Best tax levelCiliophora
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.0875332-UTR-M-pyrifera_M_contig122928:19..371622815748.0875332-UTR-M-pyrifera_M_contig122928:19..37Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122928 20..37 +
1692277550.8081996-UTR-M-pyrifera_M_contig122928:19..371692277550.8081996-UTR-M-pyrifera_M_contig122928:19..37Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122928 20..37 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815748.102225-CDS-M-pyrifera_M_contig122928:37..3491622815748.102225-CDS-M-pyrifera_M_contig122928:37..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122928 38..349 +
1692277550.8192542-CDS-M-pyrifera_M_contig122928:37..3491692277550.8192542-CDS-M-pyrifera_M_contig122928:37..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122928 38..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122928.4707.1prot_M-pyrifera_M_contig122928.4707.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122928 38..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122928.4707.1

>prot_M-pyrifera_M_contig122928.4707.1 ID=prot_M-pyrifera_M_contig122928.4707.1|Name=mRNA_M-pyrifera_M_contig122928.4707.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MLADQATITPMLADKNAVGLILAQGNEGYYRQDADEALFLYLSRNGGVTW
DRLMEGSFQFTMASHGSLFLAAENDRANNTLFYSWNQGAAFDGCIFAEEN
VFIE
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mRNA from alignment at M-pyrifera_M_contig122928:20..349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122928.4707.1 ID=mRNA_M-pyrifera_M_contig122928.4707.1|Name=mRNA_M-pyrifera_M_contig122928.4707.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig122928:20..349+ (Macrocystis pyrifera P11B4 male)
TGCACGCTCAACCTCTACATGCTCGCAGACCAGGCCACGATCACGCCCAT GCTGGCAGACAAGAACGCAGTGGGCCTCATTCTCGCGCAGGGCAACGAAG GCTACTACCGCCAGGACGCCGACGAGGCTCTCTTTCTCTACCTCAGCCGA AACGGAGGTGTCACCTGGGACCGCCTCATGGAGGGCAGCTTCCAGTTCAC TATGGCCTCCCACGGCTCTCTCTTCCTCGCTGCCGAGAACGACCGCGCCA ACAACACCCTCTTCTACTCCTGGAACCAGGGCGCCGCCTTCGACGGCTGC ATCTTTGCCGAAGAGAACGTCTTCATCGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122928:20..349+

>mRNA_M-pyrifera_M_contig122928.4707.1 ID=mRNA_M-pyrifera_M_contig122928.4707.1|Name=mRNA_M-pyrifera_M_contig122928.4707.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig122928:20..349+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCAGACCAGGCCACGATCACGCCCATGCTGGCAGACAAGAACGC
AGTGGGCCTCATTCTCGCGCAGGGCAACGAAGGCTACTACCGCCAGGACG
CCGACGAGGCTCTCTTTCTCTACCTCAGCCGAAACGGAGGTGTCACCTGG
GACCGCCTCATGGAGGGCAGCTTCCAGTTCACTATGGCCTCCCACGGCTC
TCTCTTCCTCGCTGCCGAGAACGACCGCGCCAACAACACCCTCTTCTACT
CCTGGAACCAGGGCGCCGCCTTCGACGGCTGCATCTTTGCCGAAGAGAAC
GTCTTCATCGAAATGCTCGCAGACCAGGCCACGATCACGCCCATGCTGGC
AGACAAGAACGCAGTGGGCCTCATTCTCGCGCAGGGCAACGAAGGCTACT
ACCGCCAGGACGCCGACGAGGCTCTCTTTCTCTACCTCAGCCGAAACGGA
GGTGTCACCTGGGACCGCCTCATGGAGGGCAGCTTCCAGTTCACTATGGC
CTCCCACGGCTCTCTCTTCCTCGCTGCCGAGAACGACCGCGCCAACAACA
CCCTCTTCTACTCCTGGAACCAGGGCGCCGCCTTCGACGGCTGCATCTTT
GCCGAAGAGAACGTCTTCATCGAA
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