mRNA_M-pyrifera_M_contig122912.4701.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122912.4701.1
Unique NamemRNA_M-pyrifera_M_contig122912.4701.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A1Y2BSD7_9FUNG (Dehydrogenase/reductase SDR family member 12-like protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BSD7_9FUNG)

HSP 1 Score: 138 bits (347), Expect = 3.280e-37
Identity = 80/138 (57.97%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            +VTGANSGLG AAA   A  G  VH+LCRNE RG  ARD +A +TKS ++F+ VVDV++ + V  F + +    + +DVLVNNAG+L NER ET EGLE+TFATNTLGTY LT  LLP L KS    +P RVV V+SG
Sbjct:   49 LVTGANSGLGLAAATQFARRGANVHILCRNEARGKAARDSIAAETKSSAVFLEVVDVASVKDVKRFVSTWK---KPVDVLVNNAGILPNERSETQEGLESTFATNTLGTYTLTTLLLPFLQKSS---DP-RVVNVTSG 179          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: UPI001AE67423 (dehydrogenase/reductase SDR family member 12 isoform X2 n=3 Tax=Neognathae TaxID=8825 RepID=UPI001AE67423)

HSP 1 Score: 134 bits (336), Expect = 7.940e-37
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            ++TG+NSG+G+AAAK +A  G  VH++CRN+ R   A+ E+  +T + ++F+HVVD+SN + +  F   F   H +L+VL+NNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARVV VSSG
Sbjct:   44 LITGSNSGIGKAAAKEIARRGGTVHLVCRNKERAEDAKGEIVTETGNQNIFLHVVDISNPKEIWKFAEKFKNEH-KLNVLINNAGCMVNNRELTEDGLEKNFATNTLGTYVLTTALLPLLEK----EADARVVTVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A7RKW1_NEMVE (Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RKW1_NEMVE)

HSP 1 Score: 132 bits (331), Expect = 2.240e-36
Identity = 69/138 (50.00%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            ++TGANSG+G+  A+ALA+ G  VHM+CR+E RG +AR EL +++ + ++++HV+D+S   +V  F   F A++  L VLVNNAG ++N R  T++GLE  FATNTLGTY LT  LLP L    T++E  RV+ VSSG
Sbjct:   47 MITGANSGIGKETARALAKSGATVHMVCRDEQRGEQARQELLQESGNQNIYLHVLDMSQPSNVCKFARDFAASNRPLHVLVNNAGCMVNTRTITEDGLEMNFATNTLGTYILTRELLPCL----TSQESPRVITVSSG 180          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A6J0T572_9SAUR (dehydrogenase/reductase SDR family member 12 isoform X1 n=3 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0T572_9SAUR)

HSP 1 Score: 135 bits (340), Expect = 3.240e-36
Identity = 71/138 (51.45%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            +VTGANSG+G+AAAK +A  G  VH++CRNE R  +A+ E+  +T + ++F+H++D+SN + +  F   F   H RL+VL+NNAG ++N+R+ T++GLE  FATNTLGTY LT  LLPLL K    E+ ARV+ VSSG
Sbjct:   44 MVTGANSGIGKAAAKEIARRGGAVHLVCRNEDRAEEAKKEITTETGNQNIFVHILDMSNPKRIWEFAEQFKNEH-RLNVLINNAGCMVNKRELTEDGLENNFATNTLGTYILTTVLLPLLGK----EDDARVITVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A7L4DVX3_9AVES (DHR12 reductase (Fragment) n=7 Tax=Neognathae TaxID=8825 RepID=A0A7L4DVX3_9AVES)

HSP 1 Score: 135 bits (339), Expect = 4.080e-36
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            ++TGANSG+G+A AK +A+ G  VH++CRN+ R   AR E+  +T + S+F+H+VD+SN + +  F   F   H +L+VL+NNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARV+ VSSG
Sbjct:   35 LITGANSGIGKATAKEIAKRGGTVHLVCRNKERAEVARGEIVTETGNQSIFLHIVDISNPKEIWKFAEKFKNEH-KLNVLINNAGCMVNNRELTEDGLEKNFATNTLGTYILTTALLPLLEK----EADARVITVSSG 167          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A6J3EQJ2_AYTFU (dehydrogenase/reductase SDR family member 12 isoform X2 n=5 Tax=Galloanserae TaxID=1549675 RepID=A0A6J3EQJ2_AYTFU)

HSP 1 Score: 131 bits (330), Expect = 6.390e-36
Identity = 68/138 (49.28%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            ++TG+NSG+G+A AK +A+ G  VH++CRN+ R   A+ E+  +T + ++F+H+VD+SN + +  F   F   H +L+VL+NNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARV+ VSSG
Sbjct:   44 LITGSNSGIGKATAKEIAKRGGTVHLVCRNKERAEDAKGEIVTETGNQNVFLHIVDISNPKEIWKFAEQFKNEH-KLNVLINNAGCMVNNRELTEDGLEKNFATNTLGTYVLTTALLPLLEK----EADARVITVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: UPI001ADEB0BE (dehydrogenase/reductase SDR family member 12 isoform X2 n=2 Tax=Falco TaxID=8952 RepID=UPI001ADEB0BE)

HSP 1 Score: 131 bits (330), Expect = 6.390e-36
Identity = 71/138 (51.45%), Postives = 96/138 (69.57%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            +VTGANSG+G+A AK +A  G  VH++CRN+ R   A+ E+  +T + ++F H+VD+SN + +  F   F   H +L+VLVNNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARV+ VSSG
Sbjct:   44 LVTGANSGIGKATAKEIARRGGTVHLVCRNKERAEVAKGEIVTETGNHNIFFHIVDLSNPKEIWTFAEKFKNEH-KLNVLVNNAGCMVNNRELTEDGLEKNFATNTLGTYILTTALLPLLEK----EADARVITVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: UPI001F081963 (dehydrogenase/reductase SDR family member 12 n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F081963)

HSP 1 Score: 134 bits (338), Expect = 6.420e-36
Identity = 71/138 (51.45%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            ++TGANSG+G+AAA  +A+ G  VH++CRN+GR   A+DE+ E +K+ ++F+H+VD+SNA+ V  F  +F+ ++  ++VL+NNAG ++N+R+ T+EG+E  FATNTLGTY LT AL+P L +   AE+P RVV VSSG
Sbjct:   44 MITGANSGIGKAAAHEIAKRGGTVHLVCRNKGRAETAKDEIVELSKNQNVFVHIVDMSNAKQVWEFVQSFSQSNS-VNVLINNAGCMVNQRELTEEGIEKNFATNTLGTYILTMALIPTLKQ---AEDP-RVVTVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A7L1YFA7_9PASS (DHR12 reductase (Fragment) n=9 Tax=Neognathae TaxID=8825 RepID=A0A7L1YFA7_9PASS)

HSP 1 Score: 134 bits (338), Expect = 7.000e-36
Identity = 71/138 (51.45%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            +VTGANSG+G+A AK +A+ G  VH++CRN+ R   A++E+  +T + ++F+H+VD+SN + V  F   F   H +L+VL+NNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARV+ VSSG
Sbjct:   44 LVTGANSGIGKATAKEIAKRGGTVHLVCRNKERAEVAKEEIVTETGNQNIFLHIVDISNPKEVWKFAEKFRNEH-KLNVLINNAGCMVNNRELTEDGLEKNFATNTLGTYILTTALLPLLEK----EADARVITVSSG 176          
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Match: A0A7K5AZ79_9FURN (DHR12 reductase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K5AZ79_9FURN)

HSP 1 Score: 134 bits (338), Expect = 7.000e-36
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSLFMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEATFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG 414
            +VTGANSG+G+A AK +A  G  VH++CRN+ R   A++E+  +T + ++F+H+VD+SN + V  F   F   H +L+VLVNNAG ++N R+ T++GLE  FATNTLGTY LT ALLPLL K    E  ARV+ VSSG
Sbjct:   44 LVTGANSGIGKATAKEIARRGGTVHLVCRNKERAEVAKEEIVTETGNQNIFLHIVDISNPKEVWKFAEKFRNEH-KLNVLVNNAGCMVNNRELTEDGLEKNFATNTLGTYILTTALLPLLEK----EADARVITVSSG 176          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122912.4701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2BSD7_9FUNG3.280e-3757.97Dehydrogenase/reductase SDR family member 12-like ... [more]
UPI001AE674237.940e-3751.45dehydrogenase/reductase SDR family member 12 isofo... [more]
A7RKW1_NEMVE2.240e-3650.00Predicted protein n=1 Tax=Nematostella vectensis T... [more]
A0A6J0T572_9SAUR3.240e-3651.45dehydrogenase/reductase SDR family member 12 isofo... [more]
A0A7L4DVX3_9AVES4.080e-3651.45DHR12 reductase (Fragment) n=7 Tax=Neognathae TaxI... [more]
A0A6J3EQJ2_AYTFU6.390e-3649.28dehydrogenase/reductase SDR family member 12 isofo... [more]
UPI001ADEB0BE6.390e-3651.45dehydrogenase/reductase SDR family member 12 isofo... [more]
UPI001F0819636.420e-3651.45dehydrogenase/reductase SDR family member 12 n=1 T... [more]
A0A7L1YFA7_9PASS7.000e-3651.45DHR12 reductase (Fragment) n=9 Tax=Neognathae TaxI... [more]
A0A7K5AZ79_9FURN7.000e-3652.17DHR12 reductase (Fragment) n=2 Tax=Passeriformes T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122912contigM-pyrifera_M_contig122912:9..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score139.0
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog215358.XP_010744776.1
Preferred nameDHRS12
KEGG koko:K11168
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Dehydrogenase reductase SDR family member
EggNOG OGs38GDU@33154,3BEJT@33208,3CXNV@33213,486WC@7711,4980G@7742,49U8Y@7898,COG1028@1,KOG1208@2759
COG Functional cat.Q
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122912.4701.1prot_M-pyrifera_M_contig122912.4701.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122912 9..526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815747.7955875-CDS-M-pyrifera_M_contig122912:8..1541622815747.7955875-CDS-M-pyrifera_M_contig122912:8..154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 9..154 +
1692277550.6748047-CDS-M-pyrifera_M_contig122912:8..1541692277550.6748047-CDS-M-pyrifera_M_contig122912:8..154Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 9..154 +
1622815747.8110096-CDS-M-pyrifera_M_contig122912:207..3261622815747.8110096-CDS-M-pyrifera_M_contig122912:207..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 208..326 +
1692277550.687815-CDS-M-pyrifera_M_contig122912:207..3261692277550.687815-CDS-M-pyrifera_M_contig122912:207..326Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 208..326 +
1622815747.823812-CDS-M-pyrifera_M_contig122912:377..5261622815747.823812-CDS-M-pyrifera_M_contig122912:377..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 378..526 +
1692277550.6988974-CDS-M-pyrifera_M_contig122912:377..5261692277550.6988974-CDS-M-pyrifera_M_contig122912:377..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122912 378..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122912.4701.1

>prot_M-pyrifera_M_contig122912.4701.1 ID=prot_M-pyrifera_M_contig122912.4701.1|Name=mRNA_M-pyrifera_M_contig122912.4701.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
VVTGANSGLGRAAAKALAELGHEVHMLCRNEGRGAKARDELAEDTKSDSL
FMHVVDVSNAESVAAFCTAFTAAHERLDVLVNNAGVLLNERQETDEGLEA
TFATNTLGTYRLTEALLPLLSKSGTAEEPARVVAVSSG
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mRNA from alignment at M-pyrifera_M_contig122912:9..526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122912.4701.1 ID=mRNA_M-pyrifera_M_contig122912.4701.1|Name=mRNA_M-pyrifera_M_contig122912.4701.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=518bp|location=Sequence derived from alignment at M-pyrifera_M_contig122912:9..526+ (Macrocystis pyrifera P11B4 male)
GTAGTGACAGGCGCCAATTCGGGCCTGGGAAGAGCAGCAGCCAAGGCGCT TGCAGAGCTGGGCCATGAGGTGCACATGCTCTGCCGCAACGAAGGCCGAG GCGCCAAGGCCCGCGACGAGCTCGCCGAGGACACCAAGAGCGACAGGTGA GCCGCTACAGCCCACGTGAATGCCGCCTTCCACACCGCTGACGGTGCAGC CTCTTCATGCACGTGGTGGACGTCAGCAATGCCGAGTCGGTTGCCGCCTT CTGCACCGCCTTCACTGCCGCGCACGAGCGGCTGGACGTCCTGGTCAACA ACGCAGGAGTGCTACTCAGTGCGTGCCCTTGCGCCTTTGCATTGGCGCCT GTCTGACGCCATTGCGCAGATGAGCGGCAGGAGACCGACGAAGGGCTCGA GGCCACATTCGCGACGAACACGCTCGGCACCTACCGCCTCACAGAGGCGC TGCTTCCCCTCCTATCCAAGTCGGGCACAGCGGAGGAGCCTGCAAGGGTC GTCGCGGTCTCCTCTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122912:9..526+

>mRNA_M-pyrifera_M_contig122912.4701.1 ID=mRNA_M-pyrifera_M_contig122912.4701.1|Name=mRNA_M-pyrifera_M_contig122912.4701.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig122912:9..526+ (Macrocystis pyrifera P11B4 male)
GTAGTGACAGGCGCCAATTCGGGCCTGGGAAGAGCAGCAGCCAAGGCGCT
TGCAGAGCTGGGCCATGAGGTGCACATGCTCTGCCGCAACGAAGGCCGAG
GCGCCAAGGCCCGCGACGAGCTCGCCGAGGACACCAAGAGCGACAGGTAG
TGACAGGCGCCAATTCGGGCCTGGGAAGAGCAGCAGCCAAGGCGCTTGCA
GAGCTGGGCCATGAGGTGCACATGCTCTGCCGCAACGAAGGCCGAGGCGC
CAAGGCCCGCGACGAGCTCGCCGAGGACACCAAGAGCGACAGCCTCTTCA
TGCACGTGGTGGACGTCAGCAATGCCGAGTCGGTTGCCGCCTTCTGCACC
GCCTTCACTGCCGCGCACGAGCGGCTGGACGTCCTGGTCAACAACGCAGG
AGTGCTACTCACCTCTTCATGCACGTGGTGGACGTCAGCAATGCCGAGTC
GGTTGCCGCCTTCTGCACCGCCTTCACTGCCGCGCACGAGCGGCTGGACG
TCCTGGTCAACAACGCAGGAGTGCTACTCAATGAGCGGCAGGAGACCGAC
GAAGGGCTCGAGGCCACATTCGCGACGAACACGCTCGGCACCTACCGCCT
CACAGAGGCGCTGCTTCCCCTCCTATCCAAGTCGGGCACAGCGGAGGAGC
CTGCAAGGGTCGTCGCGGTCTCCTCTGGCATGAGCGGCAGGAGACCGACG
AAGGGCTCGAGGCCACATTCGCGACGAACACGCTCGGCACCTACCGCCTC
ACAGAGGCGCTGCTTCCCCTCCTATCCAAGTCGGGCACAGCGGAGGAGCC
TGCAAGGGTCGTCGCGGTCTCCTCTGGC
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