mRNA_M-pyrifera_M_contig122761.4671.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122761.4671.1
Unique NamemRNA_M-pyrifera_M_contig122761.4671.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122761.4671.1 vs. uniprot
Match: A0A2P6NXC2_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXC2_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-9
Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:   16 LTAFLGTHLGDDTNPVIKVLKCCNQSAIAPALIELKFGLGVENTTKDVSNSWRLIVIISADKVRAMNQKRELCISGRFELEWELSV-----CMERPSMDRLEDIYLKVVDLSFNYTKQTP 360
            L  +L   L +++  V+ +LK CN + ++PA+IELKF LG++  TKDV NSW+  ++   + V     K E  + G    EW LS+       E+      E I L+V D+   Y + TP
Sbjct:  343 LKVYLSEVLKEESK-VVWLLKLCNSATMSPAIIELKFALGIQFMTKDVPNSWKFDILFHENTVEVTTGKTEEELKG----EWVLSMKYNPGTEEKVKQIDFESIQLQVTDII--YAESTP 455
[Close]
BLAST of mRNA_M-pyrifera_M_contig122761.4671.1 vs. uniprot
Match: A0A151Z2J0_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z2J0_9MYCE)

HSP 1 Score: 61.2 bits (147), Expect = 1.930e-8
Identity = 39/127 (30.71%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:    1 FLPEVLTAFLGTHLGDDTNPVIKVLKCCNQSAIAPALIELKFGLGVENTTKDVSNSWRLIVIISADKVRAMNQKRELCISGR-----FELEWELSVCMERPSMDRLEDIYLKVVDLSFNYTKQTPKR 366
            F+   LT FL     + + PV+ +LK CNQS IAP++IELK G+      KD +  W + V +  D+V   + K++  +  R     FE  WEL +   R  + +L ++ L +++++F    ++ K+
Sbjct:  954 FVTNELTKFLVDQFAEQS-PVLLILKACNQSIIAPSVIELKLGICGRLMFKD-AGGWNIKVQVRDDQVLVSHSKKQQHMDLRKEEEYFEFIWELELIFNR-DVSQLLNVSLSILEVNFGEKTRSDKK 1077
[Close]
BLAST of mRNA_M-pyrifera_M_contig122761.4671.1 vs. uniprot
Match: A0A8J4PTH7_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTH7_9MYCE)

HSP 1 Score: 54.7 bits (130), Expect = 3.750e-6
Identity = 37/111 (33.33%), Postives = 60/111 (54.05%), Query Frame = 1 
Query:   49 DTNPVIKVLKCCNQSAIAPALIELKFGLGVENTTKDVSNSWRLIV-IISAD-------------KVRAMNQKRELCISGRFELEWELSVCMERPSMDRLEDIYLKVVDLSF 339
            + +P+++VLK CNQS IAP++IELK G+      KD +  W++ V ++SAD             K + M+ ++E      FE  WEL +   R  +  L  + L ++DL+F
Sbjct:  907 ENSPILQVLKVCNQSIIAPSVIELKLGICPRLMFKD-AGGWQIKVQLLSADTATDNTVIVSHCKKQQHMDPRKE---EEYFEFIWELEMIFNR-DISALNQVSLSILDLTF 1012
[Close]
BLAST of mRNA_M-pyrifera_M_contig122761.4671.1 vs. uniprot
Match: Q54SH1_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54SH1_DICDI)

HSP 1 Score: 52.8 bits (125), Expect = 1.790e-5
Identity = 34/112 (30.36%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:   49 DTNPVIKVLKCCNQSAIAPALIELKFGLGVENTTKDVSNSWRL-IVIISADKVRAMNQKRELCISGR-----FELEWELSVCMERPSMDRLEDIYLKVVDLSFNYTKQTPKR 366
            + +P+++ LK CNQS IAP++IELK G+      KD +  W + I  I  D V   + K++  +  R     FE  WEL +      + +L ++ L +++L F    +  K+
Sbjct: 1216 EQSPILQALKACNQSIIAPSVIELKLGICQRLMFKD-AGGWEISIKAIDNDTVIISHVKKQQHMDPRKEEEYFEFLWELELIFNG-DLSKLNNVTLSILELKFGEKTRQDKK 1325
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122761.4671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2P6NXC2_9EUKA2.150e-934.17Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A151Z2J0_9MYCE1.930e-830.71Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]
A0A8J4PTH7_9MYCE3.750e-633.33Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
Q54SH1_DICDI1.790e-530.36Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122761contigM-pyrifera_M_contig122761:18..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.2453773-CDS-M-pyrifera_M_contig122761:17..1071622815746.2453773-CDS-M-pyrifera_M_contig122761:17..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122761 18..107 +
1692277549.830517-CDS-M-pyrifera_M_contig122761:17..1071692277549.830517-CDS-M-pyrifera_M_contig122761:17..107Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122761 18..107 +
1622815746.2586775-CDS-M-pyrifera_M_contig122761:234..5101622815746.2586775-CDS-M-pyrifera_M_contig122761:234..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122761 235..510 +
1692277549.8406749-CDS-M-pyrifera_M_contig122761:234..5101692277549.8406749-CDS-M-pyrifera_M_contig122761:234..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122761 235..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122761.4671.1prot_M-pyrifera_M_contig122761.4671.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122761 18..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122761.4671.1

>prot_M-pyrifera_M_contig122761.4671.1 ID=prot_M-pyrifera_M_contig122761.4671.1|Name=mRNA_M-pyrifera_M_contig122761.4671.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
FLPEVLTAFLGTHLGDDTNPVIKVLKCCNQSAIAPALIELKFGLGVENTT
KDVSNSWRLIVIISADKVRAMNQKRELCISGRFELEWELSVCMERPSMDR
LEDIYLKVVDLSFNYTKQTPKR
back to top

mRNA from alignment at M-pyrifera_M_contig122761:18..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122761.4671.1 ID=mRNA_M-pyrifera_M_contig122761.4671.1|Name=mRNA_M-pyrifera_M_contig122761.4671.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=493bp|location=Sequence derived from alignment at M-pyrifera_M_contig122761:18..510+ (Macrocystis pyrifera P11B4 male)
TTTCTTCCCGAGGTCCTCACTGCCTTCCTGGGCACGCACCTCGGCGACGA
CACCAACCCGGTGATCAAGGTGCTCAAGTGCTGCAACCAGGTGTGCTTCC
TCCCTCTCTCCCCCCTCCCTCCCTGCCCCTTGTTGGGCGAGAGGCCTTGG
ACTCTACCCGGGGAAGTCTTCTTCTCCGCTTCTCCCGCTGTTGTTGTGGC
CGACTGACCGTGGGCAGTCTGCGATTGCGCCGGCGCTGATTGAGCTGAAG
TTTGGATTGGGAGTGGAGAACACAACGAAGGACGTGAGCAACAGCTGGAG
GCTGATTGTGATCATTTCCGCGGATAAGGTGCGGGCGATGAACCAGAAGC
GAGAGCTCTGCATCAGTGGGAGGTTTGAGCTGGAGTGGGAGCTGTCTGTT
TGCATGGAGAGGCCGTCCATGGACCGACTCGAGGACATCTACCTCAAGGT
GGTGGACCTGTCCTTCAACTATACGAAGCAGACGCCCAAGAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122761:18..510+

>mRNA_M-pyrifera_M_contig122761.4671.1 ID=mRNA_M-pyrifera_M_contig122761.4671.1|Name=mRNA_M-pyrifera_M_contig122761.4671.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig122761:18..510+ (Macrocystis pyrifera P11B4 male)
TTTCTTCCCGAGGTCCTCACTGCCTTCCTGGGCACGCACCTCGGCGACGA
CACCAACCCGGTGATCAAGGTGCTCAAGTGCTGCAACCAGTTTCTTCCCG
AGGTCCTCACTGCCTTCCTGGGCACGCACCTCGGCGACGACACCAACCCG
GTGATCAAGGTGCTCAAGTGCTGCAACCAGTCTGCGATTGCGCCGGCGCT
GATTGAGCTGAAGTTTGGATTGGGAGTGGAGAACACAACGAAGGACGTGA
GCAACAGCTGGAGGCTGATTGTGATCATTTCCGCGGATAAGGTGCGGGCG
ATGAACCAGAAGCGAGAGCTCTGCATCAGTGGGAGGTTTGAGCTGGAGTG
GGAGCTGTCTGTTTGCATGGAGAGGCCGTCCATGGACCGACTCGAGGACA
TCTACCTCAAGGTGGTGGACCTGTCCTTCAACTATACGAAGCAGACGCCC
AAGAGGTCTGCGATTGCGCCGGCGCTGATTGAGCTGAAGTTTGGATTGGG
AGTGGAGAACACAACGAAGGACGTGAGCAACAGCTGGAGGCTGATTGTGA
TCATTTCCGCGGATAAGGTGCGGGCGATGAACCAGAAGCGAGAGCTCTGC
ATCAGTGGGAGGTTTGAGCTGGAGTGGGAGCTGTCTGTTTGCATGGAGAG
GCCGTCCATGGACCGACTCGAGGACATCTACCTCAAGGTGGTGGACCTGT
CCTTCAACTATACGAAGCAGACGCCCAAGAGG
back to top