mRNA_M-pyrifera_M_contig122737.4669.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122737.4669.1
Unique NamemRNA_M-pyrifera_M_contig122737.4669.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: UPI000D72EC9F (gamma-butyrobetaine dioxygenase-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72EC9F)

HSP 1 Score: 100 bits (248), Expect = 5.000e-24
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCL--EQAEVGGESVLADSFAAAFSLRESQPKHF 261
            VAE +GP+  TIYG TFDV S  +P+N+AY++  LDFHMDL YYE PPGIQ LHCL  +    GGES   D F  A   R +  KHF
Sbjct:   14 VAEHIGPISSTIYGKTFDVVSTPKPINVAYSSVALDFHMDLIYYESPPGIQFLHCLRFDDCVAGGESRFQDLFHTAERFRRNSSKHF 100          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A4P9XQF9_9FUNG (Taurine catabolism dioxygenase TauD, TfdA family-domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQF9_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 1.620e-23
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 TVAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEVGGESVLADSFAAAFSLRESQPKHF 261
            TVA   GP+  T YG ++DV+S  Q  NIAYT  +LD HMDL Y+E PPG+QLLHCL  +  GG SV ADS+ AA  LR+  P+ F
Sbjct:  200 TVASHFGPVRETFYGRSWDVRSVPQAKNIAYTDVDLDLHMDLLYFESPPGLQLLHCLANSVTGGSSVFADSYRAALELRQRSPEDF 285          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A2T7NWV0_POMCA (TauD domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NWV0_POMCA)

HSP 1 Score: 100 bits (248), Expect = 2.120e-23
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCL--EQAEVGGESVLADSFAAAFSLRESQPKHF 261
            VAE +GP+  TIYG TFDV S  +P+N+AY++  LDFHMDL YYE PPGIQ LHCL  +    GGES   D F  A   R +  KHF
Sbjct:   91 VAEHIGPISSTIYGKTFDVVSTPKPINVAYSSVALDFHMDLIYYESPPGIQFLHCLRFDDCVAGGESRFQDLFHTAERFRRNSSKHF 177          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A7S3WD88_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WD88_9SPIT)

HSP 1 Score: 97.4 bits (241), Expect = 2.450e-23
Identity = 50/87 (57.47%), Postives = 58/87 (66.67%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLE--QAEVGGESVLADSFAAAFSLRESQPKHF 261
            VAE +GPL   IYG T+DV S    +NIAYT   L  HMDLCYYE PPGIQLLHC+E     VGG+S L D+F  A  LRE+ P+ F
Sbjct:   67 VAEWIGPLQNQIYGETWDVISSDNAINIAYTGEYLGPHMDLCYYESPPGIQLLHCMEFHPEVVGGDSFLIDAFQVAEELRETNPQAF 153          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: UPI001BB1DFF5 (probable gamma-butyrobetaine dioxygenase n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1DFF5)

HSP 1 Score: 100 bits (250), Expect = 4.180e-23
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEV--GGESVLADSFAAAFSLRESQPKHF 261
            VA  +GP+  T+YG++FDV+SE +P+N+AY++  L FH+DL YYE PPG+QLLHCL+  +V  GGES+  D+F  A   R   P HF
Sbjct:  239 VANLIGPVTETLYGSSFDVRSEDKPINVAYSSVSLGFHIDLAYYESPPGLQLLHCLQFDDVVTGGESIFIDAFHIAEEFRRKFPHHF 325          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A2D3VM07_9PEZI (TauD domain-containing protein n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3VM07_9PEZI)

HSP 1 Score: 100 bits (250), Expect = 5.120e-23
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    4 TVAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEVGGESVLADSFAAAFSLRESQPKHF 261
            T+AE++GPL  T YG T+DV+S  Q  N+AYT+  L FHMDL Y E+PP IQLLHC+  +  GG S+  DSF A   L  S P+HF
Sbjct:  227 TLAERIGPLKSTFYGRTWDVRSVPQAKNVAYTSQNLGFHMDLLYMEQPPHIQLLHCIRSSSAGGASLFTDSFKAVEDLYRSNPEHF 312          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A7M7PNN2_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PNN2_STRPU)

HSP 1 Score: 100 bits (249), Expect = 5.610e-23
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEV--GGESVLADSFAAAFSLRESQPKHF 261
            VA  +GP+  T+YG TFDV++E +P+N+AY++  L FH+DL YYE PPG+QLLHCL+  ++  GGES+  D F  A   RE  P HF
Sbjct:  235 VANMIGPVTETLYGHTFDVQTEDKPINVAYSSVGLGFHVDLAYYESPPGLQLLHCLQFDDMVLGGESIFLDGFCIAEEFREKFPHHF 321          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A7S0J2F9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2F9_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 7.330e-23
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEV--GGESVLADSFAAAFSLRESQPKHF 261
            +A+ +GPL P IYG  FDV+    P+N+AY+   +  HMDLCYYE PPG+QLLHC++      GGES+L D FAA   LR  QP  F
Sbjct:   29 IAQMIGPLQPQIYGELFDVRVTHDPINLAYSTEAIGAHMDLCYYESPPGLQLLHCIQHDAHTGGGESLLIDGFAAVEQLRAEQPDAF 115          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A6P8IVY5_ACTTE (uncharacterized protein LOC116305659 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IVY5_ACTTE)

HSP 1 Score: 99.4 bits (246), Expect = 7.520e-23
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCL--EQAEVGGESVLADSFAAAFSLRESQPKHF 261
            VA K+GP++ TIYG  FDV S  +P+NIAY+++ L  HMDL YY+ PPGIQLLHC   +    GGES+  D FA A S RE+ P+ F
Sbjct:  194 VARKMGPVLRTIYGEVFDVISTPKPINIAYSSSYLPLHMDLAYYQSPPGIQLLHCFRFDPQVAGGESIFLDVFAVAESFRETHPEEF 280          
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Match: A0A4V2WZB0_9GAMM (DUF971 domain-containing protein n=2 Tax=unclassified Halomonas TaxID=2609666 RepID=A0A4V2WZB0_9GAMM)

HSP 1 Score: 99.0 bits (245), Expect = 1.120e-22
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 VAEKLGPLMPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQAEVGGESVLADSFAAAFSLRESQPKHF 261
            +AE++GPL PT +GA FDV+S+  P N AYTA  L  H DL  + +PP IQLL+CLE    GGES+ AD FAAA SLR+S P+ F
Sbjct:  175 LAERIGPLRPTNFGARFDVRSKPNPNNAAYTAIALALHTDLPNWRQPPDIQLLYCLENGAEGGESIFADGFAAAESLRQSSPEAF 259          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122737.4669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000D72EC9F5.000e-2455.17gamma-butyrobetaine dioxygenase-like n=1 Tax=Pomac... [more]
A0A4P9XQF9_9FUNG1.620e-2354.65Taurine catabolism dioxygenase TauD, TfdA family-d... [more]
A0A2T7NWV0_POMCA2.120e-2355.17TauD domain-containing protein n=1 Tax=Pomacea can... [more]
A0A7S3WD88_9SPIT2.450e-2357.47Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
UPI001BB1DFF54.180e-2351.72probable gamma-butyrobetaine dioxygenase n=1 Tax=L... [more]
A0A2D3VM07_9PEZI5.120e-2353.49TauD domain-containing protein n=1 Tax=Ramularia c... [more]
A0A7M7PNN2_STRPU5.610e-2351.72Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A7S0J2F9_9EUKA7.330e-2351.72Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6P8IVY5_ACTTE7.520e-2354.02uncharacterized protein LOC116305659 n=1 Tax=Actin... [more]
A0A4V2WZB0_9GAMM1.120e-2256.47DUF971 domain-containing protein n=2 Tax=unclassif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122737contigM-pyrifera_M_contig122737:4..264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score92.0
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog4929.XP_001482057.1
KEGG rclassRC00709
KEGG koko:K00471
KEGG ReactionR02397
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0016043,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071840
EggNOG free text desc.Taurine catabolism dioxygenase TauD, TfdA family
EggNOG OGs39RY8@33154,3NX7E@4751,3QRRZ@4890,3RS83@4891,47BMZ@766764,COG2175@1,KOG3888@2759
EC1.14.11.1
COG Functional cat.I
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size261
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.1442714-CDS-M-pyrifera_M_contig122737:3..2341622815746.1442714-CDS-M-pyrifera_M_contig122737:3..234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122737 4..234 -
1692277549.7968023-CDS-M-pyrifera_M_contig122737:3..2341692277549.7968023-CDS-M-pyrifera_M_contig122737:3..234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122737 4..234 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.157875-UTR-M-pyrifera_M_contig122737:234..2641622815746.157875-UTR-M-pyrifera_M_contig122737:234..264Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122737 235..264 -
1692277549.8089802-UTR-M-pyrifera_M_contig122737:234..2641692277549.8089802-UTR-M-pyrifera_M_contig122737:234..264Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122737 235..264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122737.4669.1prot_M-pyrifera_M_contig122737.4669.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122737 4..234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122737.4669.1

>prot_M-pyrifera_M_contig122737.4669.1 ID=prot_M-pyrifera_M_contig122737.4669.1|Name=mRNA_M-pyrifera_M_contig122737.4669.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MPTIYGATFDVKSEKQPVNIAYTATELDFHMDLCYYEEPPGIQLLHCLEQ
AEVGGESVLADSFAAAFSLRESQPKHF
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mRNA from alignment at M-pyrifera_M_contig122737:4..264-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122737.4669.1 ID=mRNA_M-pyrifera_M_contig122737.4669.1|Name=mRNA_M-pyrifera_M_contig122737.4669.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig122737:4..264- (Macrocystis pyrifera P11B4 male)
GTTACGGTTGCGGAGAAGCTGGGGCCGCTGATGCCAACCATCTACGGCGC GACGTTCGACGTGAAGAGCGAGAAGCAGCCGGTGAACATTGCCTACACCG CCACGGAGCTCGACTTCCACATGGATCTCTGTTACTACGAAGAGCCTCCT GGCATTCAGCTTTTGCACTGCCTCGAACAGGCGGAGGTGGGAGGAGAGAG TGTGCTGGCAGACAGCTTTGCTGCCGCCTTTTCCTTGAGAGAGAGCCAGC CGAAGCACTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122737:4..264-

>mRNA_M-pyrifera_M_contig122737.4669.1 ID=mRNA_M-pyrifera_M_contig122737.4669.1|Name=mRNA_M-pyrifera_M_contig122737.4669.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig122737:4..264- (Macrocystis pyrifera P11B4 male)
ATGCCAACCATCTACGGCGCGACGTTCGACGTGAAGAGCGAGAAGCAGCC
GGTGAACATTGCCTACACCGCCACGGAGCTCGACTTCCACATGGATCTCT
GTTACTACGAAGAGCCTCCTGGCATTCAGCTTTTGCACTGCCTCGAACAG
GCGGAGGTGGGAGGAGAGAGTGTGCTGGCAGACAGCTTTGCTGCCGCCTT
TTCCTTGAGAGAGAGCCAGCCGAAGCACTTCATGCCAACCATCTACGGCG
CGACGTTCGACGTGAAGAGCGAGAAGCAGCCGGTGAACATTGCCTACACC
GCCACGGAGCTCGACTTCCACATGGATCTCTGTTACTACGAAGAGCCTCC
TGGCATTCAGCTTTTGCACTGCCTCGAACAGGCGGAGGTGGGAGGAGAGA
GTGTGCTGGCAGACAGCTTTGCTGCCGCCTTTTCCTTGAGAGAGAGCCAG
CCGAAGCACTTC
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