mRNA_M-pyrifera_M_contig122724.4667.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122724.4667.1
Unique NamemRNA_M-pyrifera_M_contig122724.4667.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A8H4BM59_MUCCL (Cysteine protease n=1 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A8H4BM59_MUCCL)

HSP 1 Score: 75.5 bits (184), Expect = 6.180e-15
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSR-SLPLAAMND-PPDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            QGD L+YLDPH SR +L   ++++   +   T HC  P +IP   +DPSM +GF+CRT+ E D FC+++KTH        +F+++++ P
Sbjct:   47 QGDDLIYLDPHFSRPALETKSLSEYTREDFSTYHCTIPRRIPIANLDPSMMLGFYCRTQRELDLFCDQIKTH------TAIFSIQQSAP 129
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A397JBU9_9GLOM (Cysteine protease n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JBU9_9GLOM)

HSP 1 Score: 75.5 bits (184), Expect = 2.330e-14
Identity = 37/90 (41.11%), Postives = 51/90 (56.67%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRSLPLAAMNDP--PDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTPD 264
            Q D L YLDPH SR       ND    + + T HC  P+KI   ++DPSM +GF+C+T+ +F+DFC RV+          VFT+ +  PD
Sbjct:  122 QADGLFYLDPHHSRPAIELKSNDQLTEEELLTYHCDVPHKISISQLDPSMLLGFYCKTKDDFEDFCSRVEK-----IRQPVFTIAQEAPD 206
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A367KHS8_RHIST (Cysteine protease n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KHS8_RHIST)

HSP 1 Score: 77.0 bits (188), Expect = 2.330e-14
Identity = 41/89 (46.07%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSR-SLPLAAMND-PPDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            QGD L+YLDPH SR +L    + D   +   T HC  P KIP   IDPSM +GF+CRTR E D F E++  H   +    +FT+E++TP
Sbjct:  359 QGDDLIYLDPHFSRPALETKRLTDYTREDFVTYHCAIPRKIPLANIDPSMMIGFYCRTRQELDHFYEQI--HRISEQHTPIFTIEQHTP 445
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A433Q7Z5_9FUNG (Cysteine protease n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7Z5_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 1.450e-13
Identity = 42/90 (46.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRSLPLAAMNDPPDVMQ---TVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            QGD L YLDPH SR   L          Q   T HC TP KI    +DPSM +GF+CRTR EFDDFC RV           +FT++E  P
Sbjct:  225 QGDELFYLDPHFSRQA-LETKKSSEYTEQDYATYHCDTPRKIHISHLDPSMLLGFYCRTRGEFDDFCARVMKVAK--KYTPIFTIDEQAP 311
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A433CVU9_9FUNG (Cysteine protease n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CVU9_9FUNG)

HSP 1 Score: 74.7 bits (182), Expect = 1.620e-13
Identity = 42/90 (46.67%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRSLPLAAMNDPPDVMQ---TVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            QGD L YLDPH SR   L          Q   T HC TP KI    +DPSM +GF+CRTR EFDDFC RV           +FT++E  P
Sbjct:  565 QGDELFYLDPHFSRQA-LETKKSSEYTEQDYATYHCDTPRKIHISHLDPSMLLGFYCRTRGEFDDFCARVMKVAK--KYTPIFTIDEQAP 651
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A163KLV2_ABSGL (Cysteine protease n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163KLV2_ABSGL)

HSP 1 Score: 74.3 bits (181), Expect = 2.150e-13
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRS-LPLAAMNDPPDV-MQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            Q D L+Y+DPH SRS L   ++ D  +  + T HC  P KI   ++DPSM +GF+CRT+ +FD FCE++     G    ++FTVEE  P
Sbjct:  437 QDDELIYIDPHFSRSALETKSLVDYTEQDLATYHCTIPRKIHISQLDPSMMLGFYCRTQQDFDIFCEQIT--QIGQHYSSIFTVEEQAP 523
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A397G5E0_9GLOM (Cysteine protease n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G5E0_9GLOM)

HSP 1 Score: 73.9 bits (180), Expect = 2.910e-13
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRSLPLAAMNDP--PDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTPD 264
            Q D L YLDPH SR       ND    + + T HC  P KI   ++DPSM +GF+C+T+ +F+DFC RV+          VFT+ +  PD
Sbjct:  390 QADGLFYLDPHHSRPAIELKSNDQLTEEELLTYHCDVPRKISISQLDPSMLLGFYCKTKDDFEDFCSRVEK-----IRQPVFTIAQEAPD 474
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A8H7S0H6_9FUNG (Cysteine protease n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S0H6_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 5.080e-13
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRS-LPLAAMND-PPDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVK--THMHGDSMMTVFTVEENTP 261
            QGD L+Y+DPH SR+ L   AMN    + ++T HC  P K    ++DPSM +GF+CRT  EF+DFC+ +     +H      +FT+E + P
Sbjct:  314 QGDDLIYMDPHFSRTALETKAMNAYDEESLETYHCTIPRKTHISQLDPSMLLGFYCRTEQEFNDFCDHITQLATVH----TPIFTIENHAP 400
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A8H7UHK4_MORIS (Cysteine protease n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UHK4_MORIS)

HSP 1 Score: 72.0 bits (175), Expect = 1.400e-12
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRS-LPLAAMNDPPDV-MQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTP 261
            QGD L+YLDPH SRS +   ++N+  +    T HC  P K+    +DPSM +GF+CRT  +FDD C  +      +   +V +V+E  P
Sbjct:  446 QGDDLIYLDPHFSRSAIQTKSLNEYEETDFSTYHCSIPRKVHISHLDPSMLLGFYCRTEADFDDLCNSIAKINEENHRTSVLSVDEAAP 534
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BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Match: A0A0K9PDW8_ZOSMR (Cysteine protease n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PDW8_ZOSMR)

HSP 1 Score: 71.6 bits (174), Expect = 1.750e-12
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:    1 QGDSLLYLDPHRSRSLPLAAMNDPPDVMQTVHCRTPYKIPAEEIDPSMAMGFFCRTRPEFDDFCERVKTHMHGDSMMTVFTV 246
            Q + +LYLDPH  +   + + N+      + HC TP  IP E+IDPS+A+GF+CR + +FDDFC R        +   +FTV
Sbjct:  297 QDNKVLYLDPHVVQQAVVISRNNLEADTSSYHCSTPQHIPIEQIDPSLAIGFYCRDKDDFDDFCGRATKLAERSNGAPLFTV 378
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122724.4667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H4BM59_MUCCL6.180e-1540.45Cysteine protease n=1 Tax=Mucor circinelloides f. ... [more]
A0A397JBU9_9GLOM2.330e-1441.11Cysteine protease n=1 Tax=Diversispora epigaea Tax... [more]
A0A367KHS8_RHIST2.330e-1446.07Cysteine protease n=1 Tax=Rhizopus stolonifer TaxI... [more]
A0A433Q7Z5_9FUNG1.450e-1346.67Cysteine protease n=1 Tax=Jimgerdemannia flammicor... [more]
A0A433CVU9_9FUNG1.620e-1346.67Cysteine protease n=2 Tax=Jimgerdemannia flammicor... [more]
A0A163KLV2_ABSGL2.150e-1343.82Cysteine protease n=1 Tax=Absidia glauca TaxID=482... [more]
A0A397G5E0_9GLOM2.910e-1341.11Cysteine protease n=1 Tax=Diversispora epigaea Tax... [more]
A0A8H7S0H6_9FUNG5.080e-1341.76Cysteine protease n=1 Tax=Mucor circinatus TaxID=2... [more]
A0A8H7UHK4_MORIS1.400e-1239.33Cysteine protease n=1 Tax=Mortierella isabellina T... [more]
A0A0K9PDW8_ZOSMR1.750e-1240.24Cysteine protease n=1 Tax=Zostera marina TaxID=296... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122724contigM-pyrifera_M_contig122724:54..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score74.3
Seed ortholog evalue3.5e-11
Seed eggNOG ortholog588596.U9T4F5
Preferred nameATG4
KEGG koko:K08342
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000422,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006497,GO:0006501,GO:0006508,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009058,GO:0009059,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016236,GO:0016237,GO:0016787,GO:0018410,GO:0019538,GO:0019783,GO:0019786,GO:0022411,GO:0022607,GO:0032258,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0034727,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043170,GO:0043412,GO:0043687,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051697,GO:0061726,GO:0061919,GO:0070011,GO:0070647,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0072665,GO:0090150,GO:0140096,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1905037
EggNOG free text desc.Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy
EggNOG OGs38XHK@33154,3NVXP@4751,KOG2674@1,KOG2674@2759
COG Functional cat.UZ
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029,ko04131
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815746.0542564-CDS-M-pyrifera_M_contig122724:53..891622815746.0542564-CDS-M-pyrifera_M_contig122724:53..89Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122724 54..89 +
1692277549.7338922-CDS-M-pyrifera_M_contig122724:53..891692277549.7338922-CDS-M-pyrifera_M_contig122724:53..89Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122724 54..89 +
1622815746.068505-CDS-M-pyrifera_M_contig122724:142..4061622815746.068505-CDS-M-pyrifera_M_contig122724:142..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122724 143..406 +
1692277549.7461767-CDS-M-pyrifera_M_contig122724:142..4061692277549.7461767-CDS-M-pyrifera_M_contig122724:142..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122724 143..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122724.4667.1prot_M-pyrifera_M_contig122724.4667.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122724 54..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122724.4667.1

>prot_M-pyrifera_M_contig122724.4667.1 ID=prot_M-pyrifera_M_contig122724.4667.1|Name=mRNA_M-pyrifera_M_contig122724.4667.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
QGDSLLYLDPHRSRSLPLAAMNDPPDVMQTVHCRTPYKIPAEEIDPSMAM
GFFCRTRPEFDDFCERVKTHMHGDSMMTVFTVEENTPDDESDEEDRDKTD
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mRNA from alignment at M-pyrifera_M_contig122724:54..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122724.4667.1 ID=mRNA_M-pyrifera_M_contig122724.4667.1|Name=mRNA_M-pyrifera_M_contig122724.4667.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=353bp|location=Sequence derived from alignment at M-pyrifera_M_contig122724:54..406+ (Macrocystis pyrifera P11B4 male)
CAAGGCGACAGCTTGCTCTACCTTGACCCCCACAGAGTGCACGCAGCTCC
GTCATTGGATCCGCAAGACACGTTTCTCCCGGAGGTTAGTCCCGCTCTTT
GCCCTTGGCAGCTATGAATGACCCTCCTGACGTGATGCAGACGGTCCACT
GCCGAACGCCCTACAAGATTCCCGCCGAGGAGATAGACCCCTCGATGGCA
ATGGGCTTCTTCTGCAGAACGCGCCCTGAGTTCGATGACTTCTGTGAAAG
AGTGAAGACACACATGCATGGCGACAGCATGATGACCGTGTTCACCGTGG
AGGAGAACACACCTGACGACGAAAGTGACGAAGAAGACCGCGACAAGACG
GAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122724:54..406+

>mRNA_M-pyrifera_M_contig122724.4667.1 ID=mRNA_M-pyrifera_M_contig122724.4667.1|Name=mRNA_M-pyrifera_M_contig122724.4667.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig122724:54..406+ (Macrocystis pyrifera P11B4 male)
CAAGGCGACAGCTTGCTCTACCTTGACCCCCACAGACAAGGCGACAGCTT
GCTCTACCTTGACCCCCACAGATCCCGCTCTTTGCCCTTGGCAGCTATGA
ATGACCCTCCTGACGTGATGCAGACGGTCCACTGCCGAACGCCCTACAAG
ATTCCCGCCGAGGAGATAGACCCCTCGATGGCAATGGGCTTCTTCTGCAG
AACGCGCCCTGAGTTCGATGACTTCTGTGAAAGAGTGAAGACACACATGC
ATGGCGACAGCATGATGACCGTGTTCACCGTGGAGGAGAACACACCTGAC
GACGAAAGTGACGAAGAAGACCGCGACAAGACGGATTCCCGCTCTTTGCC
CTTGGCAGCTATGAATGACCCTCCTGACGTGATGCAGACGGTCCACTGCC
GAACGCCCTACAAGATTCCCGCCGAGGAGATAGACCCCTCGATGGCAATG
GGCTTCTTCTGCAGAACGCGCCCTGAGTTCGATGACTTCTGTGAAAGAGT
GAAGACACACATGCATGGCGACAGCATGATGACCGTGTTCACCGTGGAGG
AGAACACACCTGACGACGAAAGTGACGAAGAAGACCGCGACAAGACGGAT
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