mRNA_M-pyrifera_M_contig122609.4655.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122609.4655.1
Unique NamemRNA_M-pyrifera_M_contig122609.4655.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A2E7KI57_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KI57_9PLAN)

HSP 1 Score: 309 bits (791), Expect = 8.760e-105
Identity = 151/152 (99.34%), Postives = 152/152 (100.00%), Query Frame = 1
Query:    1 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLPRAEQHFKKLPETKPNQK 456
            RQQLLTIEKQLRTEQLVSSEKLKLQEQQTEL+ACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLPRAEQHFKKLPETKPNQK
Sbjct:  117 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELQACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLPRAEQHFKKLPETKPNQK 268          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A517Q5S7_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q5S7_9PLAN)

HSP 1 Score: 240 bits (613), Expect = 9.780e-78
Identity = 116/152 (76.32%), Postives = 132/152 (86.84%), Query Frame = 1
Query:    1 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLPRAEQHFKKLPETKPNQK 456
            RQQ+LTIEK+L+T+QL  +E+ +L++QQTEL+ACLDMPCRTFA FMLDRWKFQRH+YLTYG+GRILWQQAGIEAFD MYRWLQ REKQGEFSIDDPRLH+EFYAYWT+QKHGAFLT DQKRIR+FL P W     + E HFKK P  K NQK
Sbjct:  117 RQQILTIEKRLKTDQLTKAEQKELKDQQTELQACLDMPCRTFAHFMLDRWKFQRHLYLTYGRGRILWQQAGIEAFDAMYRWLQDREKQGEFSIDDPRLHSEFYAYWTSQKHGAFLTGDQKRIRDFLKPKWVPDTIKTENHFKK-PGAKQNQK 267          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A518ICA1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518ICA1_9PLAN)

HSP 1 Score: 147 bits (371), Expect = 3.110e-41
Identity = 74/132 (56.06%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIR-EFLSPDWA 393
            R++L  I++ L    L   +K KL ++Q EL+  L++P   FARF L +WKFQ+H+Y  YG GRILWQQAG+EAFD M+ WL+A+EKQG F I DP L   FY YWTT  HGAFLT D +RIR EFL P+WA
Sbjct:  116 RKKLEKIKQMLAAPDLKPEDKQKLLKRQAELQMDLEIPGSPFARFALKQWKFQKHLYDQYGGGRILWQQAGLEAFDAMHNWLKAQEKQGTFQITDPELRKAFYEYWTTHNHGAFLTDDPERIRKEFLEPEWA 247          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A5C5YYD0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium CA13 TaxID=2527986 RepID=A0A5C5YYD0_9BACT)

HSP 1 Score: 133 bits (334), Expect = 8.650e-36
Identity = 66/135 (48.89%), Postives = 92/135 (68.15%), Query Frame = 1
Query:    1 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLP 405
            R+QL ++++QL  + L    K KL  ++  L+A L+ P ++FA +ML+  KFQ H++ TYG GRIL+QQAG+EAFD   +WL+  E+ G+F I DP+L +  Y YWTTQ HG FL  D+KRI EFL P+W  Q P
Sbjct:  112 RRQLKSVKEQLTLKGLTEENKQKLTIEKMTLQARLNPPGKSFAAWMLNNRKFQLHLHQTYGGGRILFQQAGMEAFDATQKWLETLERDGKFKISDPKLRSVLYHYWTTQNHGPFLMDDKKRIHEFLEPEWMKQSP 246          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A6CH14_9PLAN (Uncharacterized protein (Fragment) n=3 Tax=Gimesia TaxID=1649453 RepID=A6CH14_9PLAN)

HSP 1 Score: 102 bits (253), Expect = 6.580e-24
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 1
Query:   28 QLRTEQLVSSEKLKLQEQQTEL-RACLDMPCRTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQL 402
            QL+   L  +E+ +L+++Q +L R   +   +     ML+ WKF++H+YLT G GRI     G EAFD  ++WL+A+EK+G+F I DP+L T F+ +WT + +  + T  Q+ I+EFL P W  +L
Sbjct:   92 QLKRSDLKPAERKRLEQKQQQLQRELKNGALKWMLLGMLEYWKFEKHLYLTQGGGRIRSMMFGEEAFDARFKWLEAQEKRGKFQITDPQLRTTFFEFWTDKNNRGYNTTSQESIQEFLEPQWQKEL 217          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A518A643_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A643_9PLAN)

HSP 1 Score: 87.8 bits (216), Expect = 3.140e-18
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARF-MLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQL 402
            R+ L  I+ QL+   L  +E+ +L+ ++ +L+  + +    F    +++  KF+RH+YL+ G+GRI     G EAFD  ++WL+A+EK G+F I DP+L   FY +WT Q+    +   +  I+ FL P W+  L
Sbjct:  117 REILSDIKAQLKQADLSQTERQRLKSKEKQLQQEIKLGAFQFYVIGLIEVEKFERHLYLSNGRGRIRAMMMGEEAFDARHQWLKAQEKLGKFKITDPQLRDSFYKFWTDQQQRGHILNSKDSIKSFLEPVWSRPL 251          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: UPI000784D541 (hypothetical protein n=1 Tax=Pseudoxanthomonas mexicana TaxID=128785 RepID=UPI000784D541)

HSP 1 Score: 76.6 bits (187), Expect = 2.130e-14
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query:  151 KFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRIREFL 378
            K Q+ +Y  YG GR+L+QQAG+EAFD   R L+ARE  G F+I DP      Y YWT + HGAF+  D  +I + L
Sbjct:  116 KLQKQLYDAYGGGRLLFQQAGVEAFDATRRMLEAREAGGRFAITDPEARALAYDYWT-RDHGAFMITDPAKIADAL 190          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A0Q8F266_9GAMM (Uncharacterized protein n=1 Tax=Pseudoxanthomonas sp. Root65 TaxID=1736576 RepID=A0A0Q8F266_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 4.180e-14
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  136 MLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKHGAFLTRDQKRI 366
            +L   K Q+ ++  YG GR+L+QQAG+EAFD   + L+ARE +G F+I+DP +    Y YWT + HGAF+  D  RI
Sbjct:  111 LLGNVKLQKRLHDDYGGGRLLFQQAGVEAFDATRKMLEAREAEGGFAINDPDIRALAYDYWT-RDHGAFMITDPDRI 186          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A517ZI46_9PLAN (Uncharacterized protein n=1 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZI46_9PLAN)

HSP 1 Score: 63.5 bits (153), Expect = 3.460e-9
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 1
Query:   10 LLTIEKQLRTEQLVSSEKLKLQEQQ----TELRACLDMPC----RTFARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQKH 333
            LL ++K+L    L +  K KL+++Q    T + +  ++P      + AR  +  WK +R ++  YG GR+++QQAG+EA DG  R  +  EK G+   DD  +   FY Y+   KH
Sbjct:  120 LLELQKELAAPNLSNENKAKLKKEQAMYETIVASIRELPKADKPNSIARHFIVAWKTERELHRMYG-GRVIFQQAGLEALDGRRRLFEQAEKNGDIKFDDAGVRHLFYYYYADMKH 234          
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Match: A0A1H2U9J8_THIRO (Uncharacterized protein n=1 Tax=Thiocapsa roseopersicina TaxID=1058 RepID=A0A1H2U9J8_THIRO)

HSP 1 Score: 58.2 bits (139), Expect = 2.010e-7
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 1
Query:  127 ARFMLDRWKFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHTEFYAYWTTQK-HGAFLTRDQKRIREFLSPDW 390
            AR ++ +WK  + +Y  YG GRI +QQ G E  D   ++L+ R+ +G F I DP L   F+ Y+T +  H           R F  P W
Sbjct:  115 ARAIIRQWKINKALYAQYG-GRISYQQLGPEPLDAYRKFLEQRQAEGAFGIQDPALADGFWRYFTDESIHDFMAPGGADAARAFKVPPW 202          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122609.4655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2E7KI57_9PLAN8.760e-10599.34Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
A0A517Q5S7_9PLAN9.780e-7876.32Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A518ICA1_9PLAN3.110e-4156.06Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A5C5YYD0_9BACT8.650e-3648.89Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A6CH14_9PLAN6.580e-2439.68Uncharacterized protein (Fragment) n=3 Tax=Gimesia... [more]
A0A518A643_9PLAN3.140e-1834.81Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
UPI000784D5412.130e-1448.68hypothetical protein n=1 Tax=Pseudoxanthomonas mex... [more]
A0A0Q8F266_9GAMM4.180e-1446.75Uncharacterized protein n=1 Tax=Pseudoxanthomonas ... [more]
A0A517ZI46_9PLAN3.460e-933.62Uncharacterized protein n=1 Tax=Symmachiella dynat... [more]
A0A1H2U9J8_THIRO2.010e-734.83Uncharacterized protein n=1 Tax=Thiocapsa roseoper... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122609contigM-pyrifera_M_contig122609:68..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog768671.ThimaDRAFT_3169
Hectar predicted targeting categoryother localisation
EggNOG OGs1N02H@1224,1SA2K@1236,2ESM0@1,33K5K@2
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.526769-CDS-M-pyrifera_M_contig122609:67..5261622815745.526769-CDS-M-pyrifera_M_contig122609:67..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122609 68..526 -
1692277549.4546812-CDS-M-pyrifera_M_contig122609:67..5261692277549.4546812-CDS-M-pyrifera_M_contig122609:67..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122609 68..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122609.4655.1prot_M-pyrifera_M_contig122609.4655.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122609 68..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122609.4655.1

>prot_M-pyrifera_M_contig122609.4655.1 ID=prot_M-pyrifera_M_contig122609.4655.1|Name=mRNA_M-pyrifera_M_contig122609.4655.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
RQQLLTIEKQLRTEQLVSSEKLKLQEQQTELRACLDMPCRTFARFMLDRW
KFQRHIYLTYGKGRILWQQAGIEAFDGMYRWLQAREKQGEFSIDDPRLHT
EFYAYWTTQKHGAFLTRDQKRIREFLSPDWAHQLPRAEQHFKKLPETKPN
QK*
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mRNA from alignment at M-pyrifera_M_contig122609:68..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122609.4655.1 ID=mRNA_M-pyrifera_M_contig122609.4655.1|Name=mRNA_M-pyrifera_M_contig122609.4655.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig122609:68..526- (Macrocystis pyrifera P11B4 male)
CGTCAGCAACTGCTGACGATTGAAAAGCAACTCAGAACAGAACAGCTCGT ATCATCAGAGAAGCTGAAACTACAGGAACAGCAGACCGAACTCCGGGCTT GTCTGGACATGCCCTGCCGCACCTTTGCCCGTTTCATGCTCGACCGCTGG AAATTCCAGCGACATATTTATCTGACTTACGGCAAAGGAAGAATTCTCTG GCAACAGGCCGGCATCGAAGCATTCGACGGCATGTACCGCTGGCTGCAGG CTCGGGAAAAGCAGGGGGAATTCAGCATTGATGATCCCCGGCTTCACACC GAGTTTTACGCTTACTGGACCACGCAGAAGCACGGTGCATTTCTCACCCG CGATCAGAAACGCATCCGCGAATTTCTCAGCCCTGACTGGGCACACCAAC TTCCAAGAGCAGAACAGCATTTCAAAAAACTGCCGGAAACGAAACCGAAT CAGAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122609:68..526-

>mRNA_M-pyrifera_M_contig122609.4655.1 ID=mRNA_M-pyrifera_M_contig122609.4655.1|Name=mRNA_M-pyrifera_M_contig122609.4655.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig122609:68..526- (Macrocystis pyrifera P11B4 male)
CGTCAGCAACTGCTGACGATTGAAAAGCAACTCAGAACAGAACAGCTCGT
ATCATCAGAGAAGCTGAAACTACAGGAACAGCAGACCGAACTCCGGGCTT
GTCTGGACATGCCCTGCCGCACCTTTGCCCGTTTCATGCTCGACCGCTGG
AAATTCCAGCGACATATTTATCTGACTTACGGCAAAGGAAGAATTCTCTG
GCAACAGGCCGGCATCGAAGCATTCGACGGCATGTACCGCTGGCTGCAGG
CTCGGGAAAAGCAGGGGGAATTCAGCATTGATGATCCCCGGCTTCACACC
GAGTTTTACGCTTACTGGACCACGCAGAAGCACGGTGCATTTCTCACCCG
CGATCAGAAACGCATCCGCGAATTTCTCAGCCCTGACTGGGCACACCAAC
TTCCAAGAGCAGAACAGCATTTCAAAAAACTGCCGGAAACGAAACCGAAT
CAGAAATAACGTCAGCAACTGCTGACGATTGAAAAGCAACTCAGAACAGA
ACAGCTCGTATCATCAGAGAAGCTGAAACTACAGGAACAGCAGACCGAAC
TCCGGGCTTGTCTGGACATGCCCTGCCGCACCTTTGCCCGTTTCATGCTC
GACCGCTGGAAATTCCAGCGACATATTTATCTGACTTACGGCAAAGGAAG
AATTCTCTGGCAACAGGCCGGCATCGAAGCATTCGACGGCATGTACCGCT
GGCTGCAGGCTCGGGAAAAGCAGGGGGAATTCAGCATTGATGATCCCCGG
CTTCACACCGAGTTTTACGCTTACTGGACCACGCAGAAGCACGGTGCATT
TCTCACCCGCGATCAGAAACGCATCCGCGAATTTCTCAGCCCTGACTGGG
CACACCAACTTCCAAGAGCAGAACAGCATTTCAAAAAACTGCCGGAAACG
AAACCGAATCAGAAATAA
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