mRNA_M-pyrifera_M_contig122588.4651.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122588.4651.1
Unique NamemRNA_M-pyrifera_M_contig122588.4651.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A518AFG3_9PLAN (Inosose dehydratase n=18 Tax=Planctomycetaceae TaxID=126 RepID=A0A518AFG3_9PLAN)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-14
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG 102
            GFDSWISIEDGVNGMEELQESVAFLR+KMAQYWG
Sbjct:  260 GFDSWISIEDGVNGMEELQESVAFLRSKMAQYWG 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A517WNB6_9PLAN (Inosose dehydratase n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WNB6_9PLAN)

HSP 1 Score: 65.9 bits (159), Expect = 9.770e-12
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG 102
            GFDSWISIEDGVNG+EELQ+S  FLRAK++QYWG
Sbjct:  260 GFDSWISIEDGVNGIEELQKSATFLRAKVSQYWG 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A517VN61_9PLAN (Inosose dehydratase n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VN61_9PLAN)

HSP 1 Score: 64.7 bits (156), Expect = 2.590e-11
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG 102
            GFDSWISIEDGVNGM++L+ESV+FLRAK++QYW 
Sbjct:  260 GFDSWISIEDGVNGMKDLEESVSFLRAKISQYWA 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: UPI001F201266 (sugar phosphate isomerase/epimerase n=1 Tax=Larkinella sp. IE-0392 TaxID=2907205 RepID=UPI001F201266)

HSP 1 Score: 63.5 bits (153), Expect = 6.890e-11
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYW 99
            GFDSWISIEDGV+GME+L+ SVAFLR KMAQYW
Sbjct:  261 GFDSWISIEDGVDGMEQLERSVAFLRHKMAQYW 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A5K7XAI5_9BACT (AP_endonuc_2 domain-containing protein n=1 Tax=Lacipirellula parvula TaxID=2650471 RepID=A0A5K7XAI5_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-10
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG 102
            GFD WISIEDGV+GME+L ESVAFLR K+AQ+WG
Sbjct:  260 GFDGWISIEDGVDGMEQLHESVAFLRRKIAQHWG 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A4R4KA14_9BACT (Sugar phosphate isomerase/epimerase n=1 Tax=Arundinibacter roseus TaxID=2070510 RepID=A0A4R4KA14_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 1.350e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYW 99
            GFD WISIEDGV GME+L+ SVAFLR+KMAQYW
Sbjct:  261 GFDGWISIEDGVEGMEQLERSVAFLRSKMAQYW 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A1Q4FDB5_9SPHI (Myo-inositol catabolism protein IolH n=1 Tax=Sphingobacteriales bacterium 44-15 TaxID=1895837 RepID=A0A1Q4FDB5_9SPHI)

HSP 1 Score: 62.4 bits (150), Expect = 1.810e-10
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYW 99
            GFDSWISIEDGV+GME+L+ SVAFLR K+AQYW
Sbjct:  261 GFDSWISIEDGVDGMEQLERSVAFLRKKIAQYW 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: K1L5S6_9BACT (Hydroxypyruvate isomerase n=3 Tax=Cecembia TaxID=1187078 RepID=K1L5S6_9BACT)

HSP 1 Score: 62.4 bits (150), Expect = 1.830e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYW 99
            GFDSWISIEDGV GM++L+ SVAFLR KMAQYW
Sbjct:  261 GFDSWISIEDGVEGMDQLERSVAFLRKKMAQYW 293
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: A0A366HW64_9BACT (Sugar phosphate isomerase/epimerase n=2 Tax=Roseimicrobium TaxID=1348508 RepID=A0A366HW64_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.510e-10
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG 102
            GFD WISIEDGV GM++L+ SV FLR KMAQYWG
Sbjct:  261 GFDGWISIEDGVEGMDQLERSVTFLRKKMAQYWG 294
[Close]
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Match: UPI0019A3B97D (Sugar phosphate isomerase/epimerase n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=UPI0019A3B97D)

HSP 1 Score: 57.8 bits (138), Expect = 6.120e-10
Identity = 23/33 (69.70%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 GFDSWISIEDGVNGMEELQESVAFLRAKMAQYW 99
            GF++WISIEDG++GM++L+ SVAFLR K+AQYW
Sbjct:   59 GFNNWISIEDGIDGMDQLERSVAFLRKKIAQYW 91
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122588.4651.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518AFG3_9PLAN1.400e-1497.06Inosose dehydratase n=18 Tax=Planctomycetaceae Tax... [more]
A0A517WNB6_9PLAN9.770e-1282.35Inosose dehydratase n=2 Tax=Gimesia aquarii TaxID=... [more]
A0A517VN61_9PLAN2.590e-1179.41Inosose dehydratase n=1 Tax=Gimesia algae TaxID=25... [more]
UPI001F2012666.890e-1184.85sugar phosphate isomerase/epimerase n=1 Tax=Larkin... [more]
A0A5K7XAI5_9BACT1.330e-1079.41AP_endonuc_2 domain-containing protein n=1 Tax=Lac... [more]
A0A4R4KA14_9BACT1.350e-1081.82Sugar phosphate isomerase/epimerase n=1 Tax=Arundi... [more]
A0A1Q4FDB5_9SPHI1.810e-1081.82Myo-inositol catabolism protein IolH n=1 Tax=Sphin... [more]
K1L5S6_9BACT1.830e-1081.82Hydroxypyruvate isomerase n=3 Tax=Cecembia TaxID=1... [more]
A0A366HW64_9BACT2.510e-1076.47Sugar phosphate isomerase/epimerase n=2 Tax=Roseim... [more]
UPI0019A3B97D6.120e-1069.70Sugar phosphate isomerase/epimerase n=1 Tax=Bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122588contigM-pyrifera_M_contig122588:2..106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score66.2
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog344747.PM8797T_10089
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Xylose isomerase-like TIM barrel
EggNOG OGs2IY42@203682,COG1082@1,COG1082@2
COG Functional cat.G
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size105
Cds size105
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815745.3872762-CDS-M-pyrifera_M_contig122588:1..1061622815745.3872762-CDS-M-pyrifera_M_contig122588:1..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122588 2..106 +
1692277549.4075322-CDS-M-pyrifera_M_contig122588:1..1061692277549.4075322-CDS-M-pyrifera_M_contig122588:1..106Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122588 2..106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122588.4651.1prot_M-pyrifera_M_contig122588.4651.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122588 2..106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122588.4651.1

>prot_M-pyrifera_M_contig122588.4651.1 ID=prot_M-pyrifera_M_contig122588.4651.1|Name=mRNA_M-pyrifera_M_contig122588.4651.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=35bp
GFDSWISIEDGVNGMEELQESVAFLRAKMAQYWG*
back to top

mRNA from alignment at M-pyrifera_M_contig122588:2..106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122588.4651.1 ID=mRNA_M-pyrifera_M_contig122588.4651.1|Name=mRNA_M-pyrifera_M_contig122588.4651.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=105bp|location=Sequence derived from alignment at M-pyrifera_M_contig122588:2..106+ (Macrocystis pyrifera P11B4 male)
GGATTCGACAGCTGGATCAGCATCGAAGATGGCGTCAACGGGATGGAAGA
ACTCCAGGAAAGTGTGGCATTTCTGCGGGCCAAAATGGCTCAATATTGGG
GATAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig122588:2..106+

>mRNA_M-pyrifera_M_contig122588.4651.1 ID=mRNA_M-pyrifera_M_contig122588.4651.1|Name=mRNA_M-pyrifera_M_contig122588.4651.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig122588:2..106+ (Macrocystis pyrifera P11B4 male)
GGATTCGACAGCTGGATCAGCATCGAAGATGGCGTCAACGGGATGGAAGA
ACTCCAGGAAAGTGTGGCATTTCTGCGGGCCAAAATGGCTCAATATTGGG
GATAAGGATTCGACAGCTGGATCAGCATCGAAGATGGCGTCAACGGGATG
GAAGAACTCCAGGAAAGTGTGGCATTTCTGCGGGCCAAAATGGCTCAATA
TTGGGGATAA
back to top