mRNA_M-pyrifera_M_contig122327.4600.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122327.4600.1
Unique NamemRNA_M-pyrifera_M_contig122327.4600.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A3B3RDL4_9TELE (Carboxypeptidase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RDL4_9TELE)

HSP 1 Score: 132 bits (331), Expect = 3.070e-36
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G GK+ ++ F ESQ  P TDPL+LWLNGGPG SS+ G + ENGP H+ +D ++ +NP+SWN QANVLYL+SP  VGFSYST  N  +G  D Q AEDNY  L  +F
Sbjct:   86 GPGKYFHYWFVESQHSPSTDPLVLWLNGGPGCSSMEGLLAENGPFHLKDDGKVYINPYSWNKQANVLYLDSPAGVGFSYSTSGNYQIG--DPQVAEDNYQALQQFF 189
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A8C4G9V0_9TELE (Carboxypeptidase n=5 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4G9V0_9TELE)

HSP 1 Score: 133 bits (335), Expect = 6.090e-35
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G+GK+ ++ F ESQ+ P TDP +LWLNGGPG SS+ G + ENGP H+ +D  + LNP+SWNL ANVLYLESP  VGFSYST  N     +D Q AEDNY  LL +F
Sbjct:   50 GSGKYFHYWFVESQNNPSTDPFILWLNGGPGCSSLEGMLSENGPFHLHDDATVYLNPYSWNLVANVLYLESPAGVGFSYSTTGN--YSTSDPQVAEDNYNALLDFF 153
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A3B3RDK6_9TELE (Carboxypeptidase n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RDK6_9TELE)

HSP 1 Score: 132 bits (331), Expect = 1.250e-34
Identity = 61/106 (57.55%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G GK+ ++ F ESQ  P TDPL+LWLNGGPG SS+ G + ENGP H+ +D ++ +NP+SWN QANVLYL+SP  VGFSYST  N  +G  D Q AEDNY  L  +F
Sbjct:   44 GPGKYFHYWFVESQHSPSTDPLVLWLNGGPGCSSMEGLLAENGPFHLKDDGKVYINPYSWNKQANVLYLDSPAGVGFSYSTSGNYQIG--DPQVAEDNYQALQQFF 147
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: W5KRU4_ASTMX (Carboxypeptidase n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=W5KRU4_ASTMX)

HSP 1 Score: 131 bits (330), Expect = 3.620e-34
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G GK+ ++ F ESQ+ P TDP+LLWLNGGPG SS+ G + ENGP H+++D  + +NP+SWNL ANVLYLESP  VGFSYST  N      D Q AEDNY  LL +F
Sbjct:   59 GQGKYFHYWFVESQNNPSTDPVLLWLNGGPGCSSMEGLLAENGPFHLNDDGTVYINPYSWNLLANVLYLESPAGVGFSYSTTGNYQTS--DPQVAEDNYNALLDFF 162
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A3B4E6S7_PYGNA (Carboxypeptidase n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4E6S7_PYGNA)

HSP 1 Score: 126 bits (317), Expect = 3.820e-34
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    7 GKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            GK+ ++ F ESQ+ P TDP++LWLNGGPG SS+ G + ENGP H+ +D  + LNP+SWNL ANVLY+ESP  VGFSYST  N      D Q AEDNY  LL +F
Sbjct:   85 GKYLHYWFVESQNNPSTDPVVLWLNGGPGCSSMEGLLAENGPFHLHDDGTVYLNPYSWNLLANVLYVESPPGVGFSYSTTGNYQTS--DPQVAEDNYNALLDFF 186
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A7C9CLY3_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CLY3_OPUST)

HSP 1 Score: 124 bits (311), Expect = 4.500e-34
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    7 GKHSYFMFYESQSKPETDPLLLWLNGGPGASSV-YGAMKENGPLHVDEDLQ-LSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G+  ++ F ES S PE+ PL+LWLNGGPG SS+ YGA +E GP HV+   + L LNPH+WN  AN+L+LESP  VGFSYS   +D     DN+TAEDNY FL  WF
Sbjct:   54 GRALFYWFIESPSNPESKPLVLWLNGGPGCSSIAYGAAEEIGPFHVNSGGKTLYLNPHAWNKLANLLFLESPAGVGFSYSNTTSDIYTGGDNKTAEDNYRFLEGWF 159
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: UPI0015929825 (lysosomal protective protein-like n=3 Tax=Lacertinae TaxID=162266 RepID=UPI0015929825)

HSP 1 Score: 129 bits (325), Expect = 2.530e-33
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G+G++ ++ F ESQ  P TDP++LWLNGGPG SS+ G + ENGP H+++D  L LNP+SWN  ANVLY+ESP  VG+SY+T+++     ND+Q AEDNY  L S+F
Sbjct:   82 GSGQYFHYWFVESQGNPATDPVVLWLNGGPGCSSMEGLLAENGPFHLNDDATLYLNPNSWNKVANVLYMESPAGVGYSYATEDSPI---NDSQVAEDNYQALQSFF 184
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A670K7M9_PODMU (Carboxypeptidase n=1 Tax=Podarcis muralis TaxID=64176 RepID=A0A670K7M9_PODMU)

HSP 1 Score: 129 bits (325), Expect = 3.080e-33
Identity = 58/106 (54.72%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G+G++ ++ F ESQ  P TDP++LWLNGGPG SS+ G + ENGP H+++D  L LNP+SWN  ANVLY+ESP  VG+SY+T+++     ND+Q AEDNY  L S+F
Sbjct:   82 GSGQYFHYWFVESQGNPATDPVVLWLNGGPGCSSMEGLLAENGPFHLNDDATLYLNPNSWNKVANVLYMESPAGVGYSYATEDSPI---NDSQVAEDNYQALQSFF 184
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: UPI001C4A7865 (lysosomal protective protein-like n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4A7865)

HSP 1 Score: 127 bits (319), Expect = 3.220e-33
Identity = 59/106 (55.66%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G G++ ++ F ESQ  P TDPL+LWLNGGPG SS+ G + ENGP H++ D  L LNP SWN  AN+LY+ESP  VG+SYST E+  +  +D+Q AEDNY  L S+F
Sbjct:   52 GPGQYFHYWFVESQGNPSTDPLVLWLNGGPGCSSMEGFLAENGPFHLNSDGTLYLNPSSWNQVANMLYIESPAGVGYSYSTSEDTTI--DDSQVAEDNYQALQSFF 155
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BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Match: A0A8D0DJN4_9SAUR (Carboxypeptidase n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0DJN4_9SAUR)

HSP 1 Score: 128 bits (322), Expect = 3.790e-33
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 GTGKHSYFMFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPHSWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWF 318
            G+G++ ++ F ESQ  P TDP++LWLNGGPG SS+ G + ENGPLH+++D  L LNPHSWN  ANVLY+ESP  VG+SY+  +N  +   D++ AE+NY  L S+F
Sbjct:   53 GSGRYLHYWFVESQGSPATDPVVLWLNGGPGCSSMEGLLAENGPLHMNDDGTLYLNPHSWNAVANVLYVESPAGVGYSYAAAQNSPIS--DDEVAEENYQALQSFF 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122327.4600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B3RDL4_9TELE3.070e-3657.55Carboxypeptidase n=1 Tax=Paramormyrops kingsleyae ... [more]
A0A8C4G9V0_9TELE6.090e-3558.49Carboxypeptidase n=5 Tax=Denticeps clupeoides TaxI... [more]
A0A3B3RDK6_9TELE1.250e-3457.55Carboxypeptidase n=2 Tax=Paramormyrops kingsleyae ... [more]
W5KRU4_ASTMX3.620e-3458.49Carboxypeptidase n=2 Tax=Astyanax mexicanus TaxID=... [more]
A0A3B4E6S7_PYGNA3.820e-3457.69Carboxypeptidase n=1 Tax=Pygocentrus nattereri Tax... [more]
A0A7C9CLY3_OPUST4.500e-3456.60Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
UPI00159298252.530e-3354.72lysosomal protective protein-like n=3 Tax=Lacertin... [more]
A0A670K7M9_PODMU3.080e-3354.72Carboxypeptidase n=1 Tax=Podarcis muralis TaxID=64... [more]
UPI001C4A78653.220e-3355.66lysosomal protective protein-like n=1 Tax=Scelopor... [more]
A0A8D0DJN4_9SAUR3.790e-3353.77Carboxypeptidase n=1 Tax=Salvator merianae TaxID=9... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122327contigM-pyrifera_M_contig122327:197..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score122.9
Seed ortholog evalue8.6e-26
Seed eggNOG ortholog246437.XP_006148543.1
KEGG koko:K13289
KEGG Pathwayko04142,ko04614,map04142,map04614
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of chaperone-mediated autophagy
EggNOG OGs35AFF@314146,38FWP@33154,3BDSA@33208,3CUIQ@33213,3J72V@40674,48109@7711,48YEJ@7742,COG2939@1,KOG1282@2759
EC3.4.16.5
COG Functional cat.O
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110,ko04131,ko04147
Exons1
Model size321
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.0733097-CDS-M-pyrifera_M_contig122327:196..4931622815743.0733097-CDS-M-pyrifera_M_contig122327:196..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122327 197..493 -
1692277548.350947-CDS-M-pyrifera_M_contig122327:196..4931692277548.350947-CDS-M-pyrifera_M_contig122327:196..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122327 197..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815743.0868235-UTR-M-pyrifera_M_contig122327:493..5171622815743.0868235-UTR-M-pyrifera_M_contig122327:493..517Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122327 494..517 -
1692277548.3628724-UTR-M-pyrifera_M_contig122327:493..5171692277548.3628724-UTR-M-pyrifera_M_contig122327:493..517Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122327 494..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122327.4600.1prot_M-pyrifera_M_contig122327.4600.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122327 197..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122327.4600.1

>prot_M-pyrifera_M_contig122327.4600.1 ID=prot_M-pyrifera_M_contig122327.4600.1|Name=mRNA_M-pyrifera_M_contig122327.4600.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
MFYESQSKPETDPLLLWLNGGPGASSVYGAMKENGPLHVDEDLQLSLNPH
SWNLQANVLYLESPVAVGFSYSTDENDYVGQNDNQTAEDNYAFLLSWFD
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mRNA from alignment at M-pyrifera_M_contig122327:197..517-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122327.4600.1 ID=mRNA_M-pyrifera_M_contig122327.4600.1|Name=mRNA_M-pyrifera_M_contig122327.4600.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig122327:197..517- (Macrocystis pyrifera P11B4 male)
GGTACAGGAAAGCACAGCTACTTCATGTTCTATGAGTCACAGTCCAAGCC
AGAGACCGACCCTCTCCTGCTCTGGCTTAATGGAGGCCCTGGCGCTAGCT
CTGTCTATGGAGCCATGAAAGAGAACGGCCCTCTTCATGTGGATGAGGAC
CTGCAGCTCTCGCTCAACCCCCATAGCTGGAACCTCCAGGCGAATGTGCT
CTATCTCGAGTCTCCCGTGGCTGTCGGCTTCTCGTACTCCACAGATGAGA
ACGACTACGTTGGTCAGAACGACAACCAGACTGCAGAAGATAACTACGCG
TTTCTTCTCTCATGGTTCGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122327:197..517-

>mRNA_M-pyrifera_M_contig122327.4600.1 ID=mRNA_M-pyrifera_M_contig122327.4600.1|Name=mRNA_M-pyrifera_M_contig122327.4600.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig122327:197..517- (Macrocystis pyrifera P11B4 male)
ATGTTCTATGAGTCACAGTCCAAGCCAGAGACCGACCCTCTCCTGCTCTG
GCTTAATGGAGGCCCTGGCGCTAGCTCTGTCTATGGAGCCATGAAAGAGA
ACGGCCCTCTTCATGTGGATGAGGACCTGCAGCTCTCGCTCAACCCCCAT
AGCTGGAACCTCCAGGCGAATGTGCTCTATCTCGAGTCTCCCGTGGCTGT
CGGCTTCTCGTACTCCACAGATGAGAACGACTACGTTGGTCAGAACGACA
ACCAGACTGCAGAAGATAACTACGCGTTTCTTCTCTCATGGTTCGATATG
TTCTATGAGTCACAGTCCAAGCCAGAGACCGACCCTCTCCTGCTCTGGCT
TAATGGAGGCCCTGGCGCTAGCTCTGTCTATGGAGCCATGAAAGAGAACG
GCCCTCTTCATGTGGATGAGGACCTGCAGCTCTCGCTCAACCCCCATAGC
TGGAACCTCCAGGCGAATGTGCTCTATCTCGAGTCTCCCGTGGCTGTCGG
CTTCTCGTACTCCACAGATGAGAACGACTACGTTGGTCAGAACGACAACC
AGACTGCAGAAGATAACTACGCGTTTCTTCTCTCATGGTTCGAT
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