mRNA_M-pyrifera_M_contig1223.4595.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1223.4595.1
Unique NamemRNA_M-pyrifera_M_contig1223.4595.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1223.4595.1 vs. uniprot
Match: D7G1W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W5_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.830e-28
Identity = 100/147 (68.03%), Postives = 111/147 (75.51%), Query Frame = 1 
Query:   19 VRRLASELEALQDNAAAFGSQRTGLAGCWKLIYSSAGADGRVA-RGSDQLKSIEDISYVSENCRLSHT-DTGSLRVYKRVTAPPRVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGKAGRAAATAAGRGVGKQPLRRRMFFGWRRR 453
            VRRLA+ELE+LQDNAA FGSQ++GL G WKLIYSSA  +G    RG D+L +IEDISYVSEN RLSH+ +   LRVYKRV+ PP   XXXXXXXXXXXXXXXXXXXXXXXXXXXX     R       RGV K PLRRR FFG+ RR
Sbjct:   13 VRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSSAACEGNGGGRGGDRLTTIEDISYVSENYRLSHSGEQDDLRVYKRVSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR-------RGVSKLPLRRRTFFGFLRR 152
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BLAST of mRNA_M-pyrifera_M_contig1223.4595.1 vs. uniprot
Match: A0A6H5KTQ0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTQ0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 2.710e-22
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1 
Query:   19 VRRLASELEALQDNAAAFGSQRTGLAGCWKLIYSSAGADGRVA-RGSDQLKSIEDISYVSENCRLSHT-DTGSLRVYKRVTAP 261
            VRRLA+ELE+LQDNAA FGSQ++GL G WKLIYS A  +G+   RG D+L +IE ISYVSEN RLSH+ +   LRVYKRV+ P
Sbjct:  126 VRRLATELESLQDNAAEFGSQKSGLTGSWKLIYSRAACEGKGGGRGGDRLPTIEVISYVSENYRLSHSGEEDDLRVYKRVSPP 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1223.4595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W5_ECTSI4.830e-2868.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTQ0_9PHAE2.710e-2265.06Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1223contigM-pyrifera_M_contig1223:26946..28122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003880.1
Exons2
Model size456
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815742.7786198-CDS-M-pyrifera_M_contig1223:26945..273001622815742.7786198-CDS-M-pyrifera_M_contig1223:26945..27300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 26946..27300 -
1692277548.2188232-CDS-M-pyrifera_M_contig1223:26945..273001692277548.2188232-CDS-M-pyrifera_M_contig1223:26945..27300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 26946..27300 -
1622815742.791593-CDS-M-pyrifera_M_contig1223:28021..281221622815742.791593-CDS-M-pyrifera_M_contig1223:28021..28122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 28022..28122 -
1692277548.2271235-CDS-M-pyrifera_M_contig1223:28021..281221692277548.2271235-CDS-M-pyrifera_M_contig1223:28021..28122Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1223 28022..28122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1223.4595.1prot_M-pyrifera_M_contig1223.4595.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1223 26946..28122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1223.4595.1

>prot_M-pyrifera_M_contig1223.4595.1 ID=prot_M-pyrifera_M_contig1223.4595.1|Name=mRNA_M-pyrifera_M_contig1223.4595.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
AQAEEHVRRLASELEALQDNAAAFGSQRTGLAGCWKLIYSSAGADGRVAR
GSDQLKSIEDISYVSENCRLSHTDTGSLRVYKRVTAPPRVAAAATAAASR
AAGGDDTASALMGGGAGGGPGKAGRAAATAAGRGVGKQPLRRRMFFGWRR
R*
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mRNA from alignment at M-pyrifera_M_contig1223:26946..28122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1223.4595.1 ID=mRNA_M-pyrifera_M_contig1223.4595.1|Name=mRNA_M-pyrifera_M_contig1223.4595.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1177bp|location=Sequence derived from alignment at M-pyrifera_M_contig1223:26946..28122- (Macrocystis pyrifera P11B4 male)
GCGCAGGCCGAAGAGCACGTTCGCCGCTTGGCTTCCGAGCTGGAGGCACT
CCAGGACAATGCGGCCGCTTTCGGGTCGCAGAGGACTGGCCTCGCCGGAT
GGTGCGATAATGTAGTGCTGTATCAAAATATACTGGTACCTGGTAGATAA
TACAGCTGTCTGCTCCTAGCAGCTCGCGCAGACGTCGACGGCCATCTATA
AATGTGAAGGAACACCCACAACATACGGAACTCGCGCAGCAGGATGTTCG
AAACTGTCGTGAACTGATCTGCATAGGACGCTTCAGGAAAACTCGAGAGG
GATGCTTGTTATACTACTGTAGTTGTTTTGTATGCCGTTAAAAGTTGAAA
CCCGTATTCGTCCGTATTTTCGGGGGACCATAGTAAGTAGGACCTACGGT
ACACACAAAAACCTAGATATTTCCTTATTTGTACTAACAATATTTGATAC
CCCATGGTCCCCCGTAAATGACAAGACCCCTTTTCAAGACCTGCAGCCTC
TAAAGCACTGGGAAGTTGGTTGTTTCCGATTATTTGTCGCTTTTTTTGCA
ATGGTAACAGGTTTTTACTTTGAATTCCAGGTGTTAATAGTTTGTCGCCC
TGACGCCCTTGCGGTTATTTTGACCGTGCTATCTCGAATTTTGAGATATA
ATTACTTATTCAATGAGATTGTTTCAACAGCAGTGCTACTTTGAAGTATG
GGATTAAATGGGATTAAACCCAACCCTCCCCCCTTCACCGCCTATTCCTG
CACCCCCATCGCTTCGCACGCACTAACCCCCCCTTCCCCCGCCTTCCCTC
TCTTTACCACGTGCTCTTCCAGCTGGAAGCTGATCTACTCGAGCGCGGGG
GCAGACGGCAGGGTCGCCAGAGGCTCCGACCAGCTCAAATCGATCGAGGA
CATCTCGTACGTTTCCGAGAACTGCCGGCTCTCCCACACCGACACCGGCT
CTCTGCGCGTATACAAGCGGGTCACGGCCCCCCCGAGGGTTGCCGCCGCC
GCCACCGCGGCCGCTTCGAGGGCCGCTGGGGGCGACGACACTGCGTCTGC
TTTGATGGGAGGGGGCGCGGGTGGCGGGCCGGGAAAGGCTGGGCGCGCTG
CGGCGACTGCCGCGGGACGCGGGGTGGGCAAGCAGCCCCTACGCAGGCGC
ATGTTTTTCGGCTGGCGGCGGCGCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1223:26946..28122-

>mRNA_M-pyrifera_M_contig1223.4595.1 ID=mRNA_M-pyrifera_M_contig1223.4595.1|Name=mRNA_M-pyrifera_M_contig1223.4595.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig1223:26946..28122- (Macrocystis pyrifera P11B4 male)
GCGCAGGCCGAAGAGCACGTTCGCCGCTTGGCTTCCGAGCTGGAGGCACT
CCAGGACAATGCGGCCGCTTTCGGGTCGCAGAGGACTGGCCTCGCCGGAT
GGCGCAGGCCGAAGAGCACGTTCGCCGCTTGGCTTCCGAGCTGGAGGCAC
TCCAGGACAATGCGGCCGCTTTCGGGTCGCAGAGGACTGGCCTCGCCGGA
TGCTGGAAGCTGATCTACTCGAGCGCGGGGGCAGACGGCAGGGTCGCCAG
AGGCTCCGACCAGCTCAAATCGATCGAGGACATCTCGTACGTTTCCGAGA
ACTGCCGGCTCTCCCACACCGACACCGGCTCTCTGCGCGTATACAAGCGG
GTCACGGCCCCCCCGAGGGTTGCCGCCGCCGCCACCGCGGCCGCTTCGAG
GGCCGCTGGGGGCGACGACACTGCGTCTGCTTTGATGGGAGGGGGCGCGG
GTGGCGGGCCGGGAAAGGCTGGGCGCGCTGCGGCGACTGCCGCGGGACGC
GGGGTGGGCAAGCAGCCCCTACGCAGGCGCATGTTTTTCGGCTGGCGGCG
GCGCTAACTGGAAGCTGATCTACTCGAGCGCGGGGGCAGACGGCAGGGTC
GCCAGAGGCTCCGACCAGCTCAAATCGATCGAGGACATCTCGTACGTTTC
CGAGAACTGCCGGCTCTCCCACACCGACACCGGCTCTCTGCGCGTATACA
AGCGGGTCACGGCCCCCCCGAGGGTTGCCGCCGCCGCCACCGCGGCCGCT
TCGAGGGCCGCTGGGGGCGACGACACTGCGTCTGCTTTGATGGGAGGGGG
CGCGGGTGGCGGGCCGGGAAAGGCTGGGCGCGCTGCGGCGACTGCCGCGG
GACGCGGGGTGGGCAAGCAGCCCCTACGCAGGCGCATGTTTTTCGGCTGG
CGGCGGCGCTAA
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