mRNA_M-pyrifera_M_contig122171.4567.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122171.4567.1
Unique NamemRNA_M-pyrifera_M_contig122171.4567.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: A0A6J1SLE5_FRAOC (G patch domain-containing protein 11 n=1 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1SLE5_FRAOC)

HSP 1 Score: 79.7 bits (195), Expect = 2.350e-15
Identity = 55/134 (41.04%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   10 SSEEDDYLS----MDLEA------VLKTHDSRTQSKVVKKTKAK-AVTGKRQRQMSRRELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIRAKREAKQQWHA 378
            SS+EDDY+S    +D  A      +L   D +    + K+ +A+ AVT ++QR +  R +E   REEGL++AI  DN G+ LLQ+MGY+PG G+G++G G VDPI + +K  R+ +GR  AI   +E+K+ + A
Sbjct:    2 SSDEDDYMSAAFIVDSPAKDIRPGLLHNRDQQRSHDIYKRKQAQDAVTREQQRPV--RVIEAQRREEGLQEAIGADNKGFALLQKMGYKPGSGIGKSGTGSVDPIPLNLKTDRKGLGRAAAIEELKESKRLFRA 133          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: UPI00083C1061 (G patch domain-containing protein 11-like n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C1061)

HSP 1 Score: 76.6 bits (187), Expect = 2.170e-14
Identity = 53/127 (41.73%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   10 SSEEDDYLSMDLEAVL-------KTHDSRTQSKVVKKTKAKAVTGKRQRQMSRRELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIRAKREAKQQ 369
            SS+EDDY+S    A L       K    + Q ++ KK K K+V  K+       E E   RE GLK AI EDN G+K+LQ+MGY+PG GLG    GI++PI V +K     +G   +IR K+E  +Q
Sbjct:    2 SSDEDDYMSDKFLASLSSNVGLPKRKQDQRQHEMFKK-KIKSVLPKKA------ETEAAAREAGLKNAISEDNKGFKMLQKMGYKPGSGLGIRNTGIIEPINVIVKTNNSGVGAKSSIRIKKEKNRQ 121          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: A0A482X3G4_LAOST (G patch domain-containing protein 11 n=1 Tax=Laodelphax striatellus TaxID=195883 RepID=A0A482X3G4_LAOST)

HSP 1 Score: 75.1 bits (183), Expect = 1.250e-13
Identity = 33/72 (45.83%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  148 RELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIRAKREAK 363
            R +E+ +RE+GL Q I EDN G+K+LQ++G++PG GLG++ EG  +PI + +K  R+ +GR++AI+   E K
Sbjct:   57 RVVEQELREDGLSQPISEDNKGFKMLQKLGFKPGSGLGKSQEGCKEPIPINVKSDRQGLGRVQAIKEVMEKK 128          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: A0A1B6JFI2_9HEMI (G patch domain-containing protein 11 n=4 Tax=Proconiini TaxID=565685 RepID=A0A1B6JFI2_9HEMI)

HSP 1 Score: 72.8 bits (177), Expect = 9.360e-13
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  103 KAKAVTGKRQRQMSRRELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAI 342
            K KA    R R  S +E E   RE+ L + +  DNVG+K+LQ++G++PG GLGR+GEG V+PI V +K  R+ +GR  ++
Sbjct:   44 KMKADEKNRIRNPSMKEKESVNREDALSKPLDSDNVGFKMLQKLGFKPGTGLGRSGEGRVEPISVEVKSDRQGLGRKASL 123          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: UPI000B983B19 (G patch domain-containing protein 11 n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI000B983B19)

HSP 1 Score: 72.8 bits (177), Expect = 9.690e-13
Identity = 29/64 (45.31%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  154 LEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIR 345
            +E+ +RE+GL Q I EDN G+K+LQ++G++PG GLG++ EG  +PI + +K  R+ +GR +A++
Sbjct:   59 VEKELREDGLSQPISEDNKGFKMLQKLGFKPGSGLGKSQEGCKEPIPINVKSDRQGLGRTQAVK 122          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: UPI001EEA22D2 (G patch domain-containing protein 11 isoform X1 n=2 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEA22D2)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  103 KAKAVTGKRQRQMSRRELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAI 342
            K KA    R R  S +E E   RE+ L + +  DNVG+K+LQ++G++PG GLGR+GEG V+PI V +K  R+ +GR  ++
Sbjct:   44 KIKADEKNRIRNPSMKEKESVNREDALSKPLDSDNVGFKMLQKLGFKPGTGLGRSGEGRVEPISVEVKSDRQGLGRKASL 123          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: E9H4K4_DAPPU (G patch domain-containing protein 11 n=4 Tax=Daphnia TaxID=6668 RepID=E9H4K4_DAPPU)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 1
Query:  154 LEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIR 345
            LE   REEGL  AI   N G+ +LQ+MGY PGKGLG+TGEG V+P+ V +K  R  +GR  A++
Sbjct:   47 LEAEKREEGLSTAITSQNKGFAMLQKMGYNPGKGLGKTGEGRVEPVAVELKVDRAGLGREAAVK 110          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: A0A0P5WYJ0_9CRUS (G patch domain-containing protein 11 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5WYJ0_9CRUS)

HSP 1 Score: 71.2 bits (173), Expect = 2.460e-12
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1
Query:  148 RELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIR 345
            R LE   REEGL  AI   N G+ +LQ+MGY PGKGLG+T EG V+P+ V IK  R  +GR  A++
Sbjct:   58 RVLEAEKREEGLSTAISSQNKGFAMLQKMGYNPGKGLGKTEEGRVEPVAVEIKTTRAGLGREAAVK 123          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: A0A1B6KW23_9HEMI (G patch domain-containing protein 11 n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KW23_9HEMI)

HSP 1 Score: 71.2 bits (173), Expect = 3.360e-12
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  103 KAKAVTGKRQRQMSRRELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAI 342
            K KA    R R  S +E E   RE+G+ + +  +NVG+K+LQ++G++PG GLGR+GEG V+PI V +K  R+ +GR  ++
Sbjct:   44 KMKADEKNRIRNPSFKEKESENREDGMSKPLDSNNVGFKMLQKLGFKPGSGLGRSGEGRVEPIPVEVKSDRQGLGRKASL 123          
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Match: UPI001CA81BFB (G patch domain-containing protein 11 isoform X1 n=2 Tax=Leptopilina heterotoma TaxID=63436 RepID=UPI001CA81BFB)

HSP 1 Score: 70.9 bits (172), Expect = 3.540e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  154 LEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVRIKKRRECIGRLEAIRAKR 354
            +EE  REEGL  AI  DN G+++L +MGY PGKGLG+T  GI +PI V +K  R  +G+ + ++ K+
Sbjct:   70 IEEEKREEGLSSAISSDNKGFEMLMKMGYNPGKGLGKTETGISEPIGVDVKNNRHGLGKEKVMKIKK 136          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122171.4567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J1SLE5_FRAOC2.350e-1541.04G patch domain-containing protein 11 n=1 Tax=Frank... [more]
UPI00083C10612.170e-1441.73G patch domain-containing protein 11-like n=1 Tax=... [more]
A0A482X3G4_LAOST1.250e-1345.83G patch domain-containing protein 11 n=1 Tax=Laode... [more]
A0A1B6JFI2_9HEMI9.360e-1345.00G patch domain-containing protein 11 n=4 Tax=Proco... [more]
UPI000B983B199.690e-1345.31G patch domain-containing protein 11 n=1 Tax=Nilap... [more]
UPI001EEA22D21.010e-1245.00G patch domain-containing protein 11 isoform X1 n=... [more]
E9H4K4_DAPPU1.100e-1253.13G patch domain-containing protein 11 n=4 Tax=Daphn... [more]
A0A0P5WYJ0_9CRUS2.460e-1253.03G patch domain-containing protein 11 n=2 Tax=Daphn... [more]
A0A1B6KW23_9HEMI3.360e-1243.75G patch domain-containing protein 11 n=1 Tax=Graph... [more]
UPI001CA81BFB3.540e-1247.76G patch domain-containing protein 11 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122171contigM-pyrifera_M_contig122171:9..386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.8
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog6669.EFX73154
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0098687
EggNOG free text desc.nucleic acid binding
EggNOG OGs39SU8@33154,3BFQX@33208,3CTUY@33213,41ZVM@6656,KOG1994@1,KOG1994@2759
COG Functional cat.A
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.5834763-CDS-M-pyrifera_M_contig122171:8..3861622815741.5834763-CDS-M-pyrifera_M_contig122171:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122171 9..386 -
1692277547.7850604-CDS-M-pyrifera_M_contig122171:8..3861692277547.7850604-CDS-M-pyrifera_M_contig122171:8..386Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122171 9..386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122171.4567.1prot_M-pyrifera_M_contig122171.4567.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122171 9..386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122171.4567.1

>prot_M-pyrifera_M_contig122171.4567.1 ID=prot_M-pyrifera_M_contig122171.4567.1|Name=mRNA_M-pyrifera_M_contig122171.4567.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
AAESSEEDDYLSMDLEAVLKTHDSRTQSKVVKKTKAKAVTGKRQRQMSRR
ELEETVREEGLKQAIKEDNVGYKLLQRMGYEPGKGLGRTGEGIVDPIEVR
IKKRRECIGRLEAIRAKREAKQQWHA
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mRNA from alignment at M-pyrifera_M_contig122171:9..386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122171.4567.1 ID=mRNA_M-pyrifera_M_contig122171.4567.1|Name=mRNA_M-pyrifera_M_contig122171.4567.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig122171:9..386- (Macrocystis pyrifera P11B4 male)
GCAGCGGAGTCTTCTGAAGAGGATGACTACTTGTCAATGGACTTGGAAGC TGTGCTTAAGACTCATGACAGCCGCACACAGAGCAAGGTGGTCAAGAAGA CCAAAGCAAAGGCTGTTACTGGCAAGAGACAGCGACAGATGAGCAGACGA GAGCTGGAGGAGACTGTGCGGGAGGAGGGCCTCAAGCAGGCGATCAAGGA AGACAACGTGGGCTACAAGCTTCTGCAGCGCATGGGATATGAGCCCGGGA AGGGCCTCGGGCGCACGGGAGAGGGAATCGTGGACCCGATCGAGGTGCGC ATCAAGAAGAGGAGAGAGTGCATTGGTCGGCTCGAGGCGATCAGAGCGAA GCGAGAGGCGAAGCAACAGTGGCACGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122171:9..386-

>mRNA_M-pyrifera_M_contig122171.4567.1 ID=mRNA_M-pyrifera_M_contig122171.4567.1|Name=mRNA_M-pyrifera_M_contig122171.4567.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig122171:9..386- (Macrocystis pyrifera P11B4 male)
GCAGCGGAGTCTTCTGAAGAGGATGACTACTTGTCAATGGACTTGGAAGC
TGTGCTTAAGACTCATGACAGCCGCACACAGAGCAAGGTGGTCAAGAAGA
CCAAAGCAAAGGCTGTTACTGGCAAGAGACAGCGACAGATGAGCAGACGA
GAGCTGGAGGAGACTGTGCGGGAGGAGGGCCTCAAGCAGGCGATCAAGGA
AGACAACGTGGGCTACAAGCTTCTGCAGCGCATGGGATATGAGCCCGGGA
AGGGCCTCGGGCGCACGGGAGAGGGAATCGTGGACCCGATCGAGGTGCGC
ATCAAGAAGAGGAGAGAGTGCATTGGTCGGCTCGAGGCGATCAGAGCGAA
GCGAGAGGCGAAGCAACAGTGGCACGCCGCAGCGGAGTCTTCTGAAGAGG
ATGACTACTTGTCAATGGACTTGGAAGCTGTGCTTAAGACTCATGACAGC
CGCACACAGAGCAAGGTGGTCAAGAAGACCAAAGCAAAGGCTGTTACTGG
CAAGAGACAGCGACAGATGAGCAGACGAGAGCTGGAGGAGACTGTGCGGG
AGGAGGGCCTCAAGCAGGCGATCAAGGAAGACAACGTGGGCTACAAGCTT
CTGCAGCGCATGGGATATGAGCCCGGGAAGGGCCTCGGGCGCACGGGAGA
GGGAATCGTGGACCCGATCGAGGTGCGCATCAAGAAGAGGAGAGAGTGCA
TTGGTCGGCTCGAGGCGATCAGAGCGAAGCGAGAGGCGAAGCAACAGTGG
CACGCC
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