mRNA_M-pyrifera_M_contig122159.4563.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122159.4563.1
Unique NamemRNA_M-pyrifera_M_contig122159.4563.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: UPI0014022AC5 (uncharacterized protein LOC116970282 n=1 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014022AC5)

HSP 1 Score: 58.2 bits (139), Expect = 6.880e-8
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   25 IKLWDAAL------NEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVWDVRVNGGKRRADVAMFHCKAPVSALAVSPANS 255
            I+ WD +       ++ + H   H DRV A    T++++VTASHD++ R+WD R         V  F C+APV +LA+SPA+S
Sbjct:  265 IRPWDGSNMMIREDSDNITHKQVHSDRVTAV-VATDDIIVTASHDQSVRLWDRRT-----LRQVGFFQCRAPVLSLALSPASS 341          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: A0A1V9Z5H9_9STRA (LisH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5H9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-7
Identity = 27/79 (34.18%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   13 YDGAI-KLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVWDVRVNGGKRRADVAMFHCKAPVSALAVSP 246
            YD AI +LWD   +    H+ GH   +N+ ++ T +L+++AS DRT R+WDVR    ++     +    +P  ++A+SP
Sbjct:  599 YDDAIVRLWDLETSTVSSHLPGHSSELNSVQYQTPHLILSASQDRTVRLWDVRSGCCEK-----LLKLHSPAQSIAISP 672          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: A0A196SFH0_BLAHN (Notchless family protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFH0_BLAHN)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-6
Identity = 23/53 (43.40%), Postives = 31/53 (58.49%), Query Frame = 1
Query:    1 ASVSYDGAIKLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVW 159
            AS S DG + +W+     +   I GH D +  C++  ENL+ TAS DRT RVW
Sbjct:  226 ASSSRDGTVVVWNVNTRRKEMTISGHSDSIECCKWGGENLIYTASRDRTIRVW 278          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: UPI0007B882D0 (telomerase protein component 1-like n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=UPI0007B882D0)

HSP 1 Score: 51.6 bits (122), Expect = 1.350e-6
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   76 HGDRVNACRFLTENLLVTASHDRTARVWDVRVNGGKRRADVAMFHCKAPVSALAVSPANSR 258
            H D+V+  + LTE+L+++ASHDRT ++WD R      +  V MF C  PV  L V+P N +
Sbjct:   19 HTDKVSVLQ-LTESLIISASHDRTVKLWDRRT-----KKQVGMFVCGGPVKVLEVNPCNPK 73          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: UPI000CE1E1CB (ribosome biogenesis protein ytm1-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1E1CB)

HSP 1 Score: 53.9 bits (128), Expect = 2.200e-6
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1
Query:    4 SVSYDGAIKLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVW--DVRVNGGKRRADVAMFHCKAPVSALAVSPANSRI 261
            S SYDG +++W+ + +E +    GH   V   RFL+   +V+AS DRT R+W  D  +        + +F  K+ V +LAV   +SRI
Sbjct:  145 SGSYDGQLRVWNMS-SEVMATGSGHAGAVKTARFLSPTQVVSASMDRTLRIWKYDDTLGAASLTPSIELFGHKSSVDSLAVHTPSSRI 231          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: A0A5C6DL35_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6DL35_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 2.350e-6
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   19 GAIKLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVWD 162
            G I++WDAAL    + + GH   + + RF     LV+ASHDRT R+WD
Sbjct:  886 GEIQIWDAALTRLKQTLHGHSGAITSLRFADRYRLVSASHDRTIRIWD 933          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: A0A423WZH5_9PEZI (Nuclear distribution protein PAC1 n=1 Tax=Valsa malicola TaxID=356882 RepID=A0A423WZH5_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 3.000e-6
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 ASVSYDGAIKLWDAALN-EEVRHIDGHGDRVNACRFL-----TENLLVTASHDRTARVWD 162
            AS S D  +KLWD A + + +R + GH   V+A RF+     + NLLV+AS D+T R+WD
Sbjct:  176 ASCSSDLTVKLWDPAKDYQNIRTLSGHDHSVSAVRFIPSTTSSANLLVSASRDKTLRIWD 235          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: UPI0007B96437 (telomerase protein component 1-like n=2 Tax=Sinocyclocheilus TaxID=75365 RepID=UPI0007B96437)

HSP 1 Score: 53.1 bits (126), Expect = 4.410e-6
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   76 HGDRVNACRFLTENLLVTASHDRTARVWDVRVNGGKRRADVAMFHCKAPVSALAVSPANSR 258
            H D+V+  R LTE+L+++ASHDRT ++WD R      +  V MF C  PV  L V+P N +
Sbjct: 2544 HTDKVSVLR-LTESLIISASHDRTVKLWDRRT-----KKQVGMFVCGGPVKVLEVNPCNPK 2598          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: A0A423VKJ5_9PEZI (Nuclear distribution protein PAC1 n=1 Tax=Valsa sordida TaxID=252740 RepID=A0A423VKJ5_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 5.850e-6
Identity = 28/61 (45.90%), Postives = 37/61 (60.66%), Query Frame = 1
Query:    1 ASVSYDGAIKLWDAALN-EEVRHIDGHGDRVNACRFLTE------NLLVTASHDRTARVWD 162
            AS S D  +KLWD A + + +R + GH   V+A RF+        NLLV+AS D+T RVWD
Sbjct:  176 ASCSSDLTVKLWDPANDYQNIRTLSGHDHSVSAVRFIPSAASSSGNLLVSASRDKTLRVWD 236          
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Match: D8SKF3_SELML (UDENN domain-containing protein n=7 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SKF3_SELML)

HSP 1 Score: 52.8 bits (125), Expect = 5.910e-6
Identity = 18/53 (33.96%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   16 DGAIKLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTARVWDVRVN 174
            D  + +WD A ++    +DGH ++++  R L+E  +++ASHD T ++WD R +
Sbjct:  910 DTLVLIWDKATSQNSMKLDGHREKISCVRMLSEERVLSASHDGTVKMWDARTD 962          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122159.4563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0014022AC56.880e-838.55uncharacterized protein LOC116970282 n=1 Tax=Ambly... [more]
A0A1V9Z5H9_9STRA1.870e-734.18LisH domain-containing protein n=1 Tax=Thraustothe... [more]
A0A196SFH0_BLAHN1.180e-643.40Notchless family protein n=1 Tax=Blastocystis sp. ... [more]
UPI0007B882D01.350e-642.62telomerase protein component 1-like n=2 Tax=Sinocy... [more]
UPI000CE1E1CB2.200e-635.23ribosome biogenesis protein ytm1-like n=1 Tax=Quer... [more]
A0A5C6DL35_9BACT2.350e-645.83Non-specific serine/threonine protein kinase n=1 T... [more]
A0A423WZH5_9PEZI3.000e-645.00Nuclear distribution protein PAC1 n=1 Tax=Valsa ma... [more]
UPI0007B964374.410e-644.26telomerase protein component 1-like n=2 Tax=Sinocy... [more]
A0A423VKJ5_9PEZI5.850e-645.90Nuclear distribution protein PAC1 n=1 Tax=Valsa so... [more]
D8SKF3_SELML5.910e-633.96UDENN domain-containing protein n=7 Tax=Selaginell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122159contigM-pyrifera_M_contig122159:251..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.4295118-CDS-M-pyrifera_M_contig122159:250..5201622815741.4295118-CDS-M-pyrifera_M_contig122159:250..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122159 251..520 -
1692277547.7232804-CDS-M-pyrifera_M_contig122159:250..5201692277547.7232804-CDS-M-pyrifera_M_contig122159:250..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122159 251..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122159.4563.1prot_M-pyrifera_M_contig122159.4563.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122159 251..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122159.4563.1

>prot_M-pyrifera_M_contig122159.4563.1 ID=prot_M-pyrifera_M_contig122159.4563.1|Name=mRNA_M-pyrifera_M_contig122159.4563.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
ASVSYDGAIKLWDAALNEEVRHIDGHGDRVNACRFLTENLLVTASHDRTA
RVWDVRVNGGKRRADVAMFHCKAPVSALAVSPANSRIALG
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mRNA from alignment at M-pyrifera_M_contig122159:251..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122159.4563.1 ID=mRNA_M-pyrifera_M_contig122159.4563.1|Name=mRNA_M-pyrifera_M_contig122159.4563.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig122159:251..520- (Macrocystis pyrifera P11B4 male)
GCCTCTGTCTCCTACGACGGAGCCATCAAGCTCTGGGACGCCGCCCTCAA CGAGGAGGTGCGCCACATCGATGGCCACGGCGACCGCGTAAACGCTTGCC GATTCCTCACCGAGAACCTCCTCGTCACTGCCTCGCACGACCGCACTGCC CGAGTGTGGGACGTGCGAGTCAACGGCGGCAAGAGGAGGGCAGACGTGGC CATGTTCCACTGCAAGGCCCCTGTTAGTGCGCTCGCTGTCTCCCCTGCGA ACTCTCGCATTGCTCTCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122159:251..520-

>mRNA_M-pyrifera_M_contig122159.4563.1 ID=mRNA_M-pyrifera_M_contig122159.4563.1|Name=mRNA_M-pyrifera_M_contig122159.4563.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig122159:251..520- (Macrocystis pyrifera P11B4 male)
GCCTCTGTCTCCTACGACGGAGCCATCAAGCTCTGGGACGCCGCCCTCAA
CGAGGAGGTGCGCCACATCGATGGCCACGGCGACCGCGTAAACGCTTGCC
GATTCCTCACCGAGAACCTCCTCGTCACTGCCTCGCACGACCGCACTGCC
CGAGTGTGGGACGTGCGAGTCAACGGCGGCAAGAGGAGGGCAGACGTGGC
CATGTTCCACTGCAAGGCCCCTGTTAGTGCGCTCGCTGTCTCCCCTGCGA
ACTCTCGCATTGCTCTCGGCGCCTCTGTCTCCTACGACGGAGCCATCAAG
CTCTGGGACGCCGCCCTCAACGAGGAGGTGCGCCACATCGATGGCCACGG
CGACCGCGTAAACGCTTGCCGATTCCTCACCGAGAACCTCCTCGTCACTG
CCTCGCACGACCGCACTGCCCGAGTGTGGGACGTGCGAGTCAACGGCGGC
AAGAGGAGGGCAGACGTGGCCATGTTCCACTGCAAGGCCCCTGTTAGTGC
GCTCGCTGTCTCCCCTGCGAACTCTCGCATTGCTCTCGGC
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