mRNA_M-pyrifera_M_contig122144.4560.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122144.4560.1
Unique NamemRNA_M-pyrifera_M_contig122144.4560.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A2T9ZEU2_9FUNG (SPX domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9ZEU2_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 5.500e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   88 KKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITG 216
            K +RRL KA++E+YRG ++LK+F+VLN TGFVKI KK+ K TG
Sbjct:  402 KAKRRLKKAIKEIYRGFEMLKSFRVLNKTGFVKILKKYTKATG 444          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A2T9Z756_9FUNG (Uncharacterized protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Z756_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 5.620e-8
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1
Query:   88 KKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITG 216
            K +RRL KA++E+YRG ++LK+F+VLN TGFVKI KK+ K TG
Sbjct:  402 KAKRRLKKAIKEIYRGFEMLKSFRVLNKTGFVKILKKYTKATG 444          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1R0H0R5_9FUNG (SPX and EXS domain-containing protein 5 n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H0R5_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 1.940e-7
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   22 KINGRRFGIIKRATSRQKLLFGKKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITG 216
            K+N +   +   + +  K+   K + RL KA+ E++RGI++LKNF++LNHTGF KI KK++K T 
Sbjct:  509 KLNSKPIKVNSDSETLTKIATEKAQGRLKKAIMEVHRGIEMLKNFRILNHTGFAKIIKKYNKTTN 573          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1Y1ZEL2_9FUNG (SPX-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZEL2_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 2.690e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   94 RRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITGEK 222
            +++L KA+ E YR ++LLKN+++LNHTGF+KI KK +K T  K
Sbjct:  159 KQKLEKALLEFYRSVELLKNYKILNHTGFMKILKKFEKTTNWK 201          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: UPI00096B257E (xenotropic and polytropic retrovirus receptor 1 homolog n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B257E)

HSP 1 Score: 50.8 bits (120), Expect = 3.080e-6
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   88 KKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITG 216
            +KR  L+KA  E Y  + LL+NFQ LNHTGF KI KKHDK+  
Sbjct:   48 RKRNSLIKAFCEFYYHLSLLQNFQKLNHTGFRKILKKHDKLAS 90          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1Y2GMV8_9FUNG (EXS family-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GMV8_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 3.290e-6
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 QQVSDKINGRRFGIIKRATSRQKLLFGKKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITGEK 222
            Q V +  N  +  +  +   RQ L     R R+  A+ E +R ++++KN++VLNHTGFVKI KK+DK  G K
Sbjct:  306 QSVDNDANLAQMILDDKENRRQYLSHKVARTRIKAALYEFHRSLEMIKNYKVLNHTGFVKIMKKYDKTAGWK 377          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1X7T578_AMPQE (SPX domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T578_AMPQE)

HSP 1 Score: 50.8 bits (120), Expect = 5.360e-6
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   88 KKRRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITG 216
            +KR  L+KA  E Y  + LL+NFQ LNHTGF KI KKHDK+  
Sbjct:   30 RKRNSLIKAFCEFYYHLSLLQNFQKLNHTGFRKILKKHDKLAS 72          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1Y1YTL7_9FUNG (EXS-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YTL7_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 8.300e-6
Identity = 23/41 (56.10%), Postives = 32/41 (78.05%), Query Frame = 1
Query:  100 RLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITGEK 222
            +L KA+ E YR ++LLKN+++LNHTGF+KI KK +K T  K
Sbjct:  238 KLEKALLEFYRSVELLKNYKILNHTGFMKILKKFEKTTHWK 278          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A1E4T1F5_9ASCO (Uncharacterized protein (Fragment) n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T1F5_9ASCO)

HSP 1 Score: 51.6 bits (122), Expect = 8.340e-6
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   94 RRRLMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKITGEK 222
            RR+L KA+ ELYR ++LLK+F+VLN T F KI KK+DK T ++
Sbjct:  368 RRQLKKAVYELYRSMELLKSFRVLNRTAFRKIIKKYDKATNDQ 410          
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Match: A0A8H3M8D8_9GLOM (EXS family protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3M8D8_9GLOM)

HSP 1 Score: 51.6 bits (122), Expect = 8.370e-6
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  103 LMKAMRELYRGIQLLKNFQVLNHTGFVKITKKHDKIT 213
            + KA+ E YRG+ LLKN+ +LN TGFVKI KK+DKIT
Sbjct:  245 IKKALFEFYRGVLLLKNYIILNKTGFVKILKKYDKIT 281          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122144.4560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2T9ZEU2_9FUNG5.500e-862.79SPX domain-containing protein n=1 Tax=Smittium meg... [more]
A0A2T9Z756_9FUNG5.620e-862.79Uncharacterized protein n=1 Tax=Smittium megazygos... [more]
A0A1R0H0R5_9FUNG1.940e-743.08SPX and EXS domain-containing protein 5 n=1 Tax=Sm... [more]
A0A1Y1ZEL2_9FUNG2.690e-653.49SPX-domain-containing protein n=1 Tax=Basidiobolus... [more]
UPI00096B257E3.080e-658.14xenotropic and polytropic retrovirus receptor 1 ho... [more]
A0A1Y2GMV8_9FUNG3.290e-640.28EXS family-domain-containing protein n=1 Tax=Lobos... [more]
A0A1X7T578_AMPQE5.360e-658.14SPX domain-containing protein n=1 Tax=Amphimedon q... [more]
A0A1Y1YTL7_9FUNG8.300e-656.10EXS-domain-containing protein n=1 Tax=Basidiobolus... [more]
A0A1E4T1F5_9ASCO8.340e-658.14Uncharacterized protein (Fragment) n=1 Tax=[Candid... [more]
A0A8H3M8D8_9GLOM8.370e-664.86EXS family protein n=2 Tax=Rhizophagus clarus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122144contigM-pyrifera_M_contig122144:93..317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.3321707-CDS-M-pyrifera_M_contig122144:92..3171622815741.3321707-CDS-M-pyrifera_M_contig122144:92..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122144 93..317 +
1692277547.6755776-CDS-M-pyrifera_M_contig122144:92..3171692277547.6755776-CDS-M-pyrifera_M_contig122144:92..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122144 93..317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122144.4560.1prot_M-pyrifera_M_contig122144.4560.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122144 93..317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122144.4560.1

>prot_M-pyrifera_M_contig122144.4560.1 ID=prot_M-pyrifera_M_contig122144.4560.1|Name=mRNA_M-pyrifera_M_contig122144.4560.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MLQQVSDKINGRRFGIIKRATSRQKLLFGKKRRRLMKAMRELYRGIQLLK
NFQVLNHTGFVKITKKHDKITGEK*
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mRNA from alignment at M-pyrifera_M_contig122144:93..317+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122144.4560.1 ID=mRNA_M-pyrifera_M_contig122144.4560.1|Name=mRNA_M-pyrifera_M_contig122144.4560.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=225bp|location=Sequence derived from alignment at M-pyrifera_M_contig122144:93..317+ (Macrocystis pyrifera P11B4 male)
ATGCTACAGCAGGTCAGCGACAAGATCAACGGCCGGCGCTTCGGCATCAT CAAGCGCGCGACCTCCAGGCAGAAGCTCCTCTTTGGCAAGAAGCGGCGGC GCCTCATGAAGGCCATGCGGGAGCTTTACCGTGGCATCCAACTTCTGAAG AACTTCCAGGTGCTGAACCACACCGGTTTTGTCAAGATCACAAAGAAGCA CGACAAGATCACAGGTGAAAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122144:93..317+

>mRNA_M-pyrifera_M_contig122144.4560.1 ID=mRNA_M-pyrifera_M_contig122144.4560.1|Name=mRNA_M-pyrifera_M_contig122144.4560.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig122144:93..317+ (Macrocystis pyrifera P11B4 male)
ATGCTACAGCAGGTCAGCGACAAGATCAACGGCCGGCGCTTCGGCATCAT
CAAGCGCGCGACCTCCAGGCAGAAGCTCCTCTTTGGCAAGAAGCGGCGGC
GCCTCATGAAGGCCATGCGGGAGCTTTACCGTGGCATCCAACTTCTGAAG
AACTTCCAGGTGCTGAACCACACCGGTTTTGTCAAGATCACAAAGAAGCA
CGACAAGATCACAGGTGAAAAGTGAATGCTACAGCAGGTCAGCGACAAGA
TCAACGGCCGGCGCTTCGGCATCATCAAGCGCGCGACCTCCAGGCAGAAG
CTCCTCTTTGGCAAGAAGCGGCGGCGCCTCATGAAGGCCATGCGGGAGCT
TTACCGTGGCATCCAACTTCTGAAGAACTTCCAGGTGCTGAACCACACCG
GTTTTGTCAAGATCACAAAGAAGCACGACAAGATCACAGGTGAAAAGTGA
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