mRNA_M-pyrifera_M_contig122141.4558.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122141.4558.1
Unique NamemRNA_M-pyrifera_M_contig122141.4558.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: R1DKR6_EMIHU (Uncharacterized protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DKR6_EMIHU)

HSP 1 Score: 110 bits (274), Expect = 1.710e-28
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 1
Query:   34 ALLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGL 342
            ALL D   L+    AAL EVFCRFD D DG +S +EL  FA+ CNGG  F + E  ++   F  D  GRLT+ GFL+M HLQT A P +TW DL+ALGYD+ L
Sbjct:    7 ALLDDDDWLAPPLEAALGEVFCRFDADADGAWSTAELQSFARTCNGGDEFGEAELSQVGE-FTTDGHGRLTRRGFLEMMHLQTMARPEDTWADLRALGYDSSL 108          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A0M0K2V2_9EUKA (Small nuclear ribonucleoprotein splicing factor n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K2V2_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 8.250e-28
Identity = 57/112 (50.89%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   10 KGKQIAKEALLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQ 345
            K K    +  L DGG+LS     ALE VF RFD D DG  S++EL  FA+ACNGG+ F  EE  E+   F     G LT+ GFLQM+H QT A P +TW DLKALG++N L+
Sbjct:   12 KVKSKTPKVALLDGGDLSHALQGALESVFARFDADHDGALSETELQAFARACNGGETFEDEELDEIRQFFDTTPHGCLTRKGFLQMYHTQTLARPHDTWSDLKALGFNNNLE 123          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: R1FE02_EMIHU (Uncharacterized protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FE02_EMIHU)

HSP 1 Score: 99.0 bits (245), Expect = 9.740e-25
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   76 AALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYD 333
            AAL EVFCRFD D DG +S +EL  FA+ CNGG+ F + E  ++   F  + +GRLT+ GFL+M  LQT A P +TW DL+ALGYD
Sbjct:    2 AALGEVFCRFDADVDGAWSTAELQSFARTCNGGEEFGEAELSQVGE-FTTNGQGRLTRRGFLEMMQLQTMARPEDTWADLRALGYD 86          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A197JK86_9FUNG (EF-hand domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JK86_9FUNG)

HSP 1 Score: 99.4 bits (246), Expect = 2.120e-24
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   37 LLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQLTTSAEE 366
            L  + G L+  C  AL  +F R+DVD DG  S++ELD FAK  NG   F +  ++E+     +D++G+LT  GFLQM++LQTS+EP ETW+DL+  GYD  L+L  S  E
Sbjct:    9 LTEEDGALTKACEDALVAIFERYDVDKDGALSNAELDAFAKDTNGD-VFDEVAREEITEFLDLDSKGQLTLKGFLQMYNLQTSSEPEETWKDLQKHGYDTNLKLVASRSE 117          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A1S8WA04_9FUNG (EF-hand domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8WA04_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 8.190e-24
Identity = 52/106 (49.06%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   37 LLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQLTT 354
            LL D    +     AL E+F RFD DGDGVFS +E+D FA A NG K F     +E+   F VD+ G+LT  GFL+MF +QT A+  ETW+DL+  GYD+ L L T
Sbjct:    8 LLDDEDSFTPQARQALTEIFTRFDKDGDGVFSQAEVDAFAIASNGSK-FDSSTLEEIKEYFDVDSNGQLTLQGFLEMFQMQTLADTEETWKDLEKHGYDDQLHLKT 112          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A7S4FB56_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4FB56_CHRCT)

HSP 1 Score: 100 bits (248), Expect = 1.320e-23
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   82 LEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQL 348
            L ++F RFD+DG+G  S  EL  FAK CNGG+ FS++E +++   F  D  G LTK GF QM+H+QT+A P +TW+DLKALGY   L+L
Sbjct:   51 LLQIFNRFDLDGNGRLSVDELQGFAKVCNGGEIFSQDELEQIEQCFDTDDCGGLTKRGFFQMYHMQTTARPEDTWKDLKALGYTETLEL 139          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A7S0LAA6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LAA6_9EUKA)

HSP 1 Score: 101 bits (251), Expect = 1.380e-23
Identity = 50/111 (45.05%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   25 AKEALLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQLTTS 357
            A  A L DG  LS+   A L  +F RFDVD DG  +  E+  + + CNGG+    +E +++   F  D +G LT  GF QM+HLQT A P +TW DLKALGY+  LQ  T+
Sbjct:   53 APAAQLLDGDFLSSELQAVLTAIFHRFDVDSDGALNAYEVQSYTRTCNGGEGLDDDELEQMRQYFDKDGDGNLTLRGFFQMYHLQTQARPVDTWNDLKALGYNKALQPVTA 163          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A507DZK1_9FUNG (EF-hand domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DZK1_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 1.690e-23
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   37 LLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQL 348
            LLTD  + +    +A  E+F RFD DGDG  S +E+D FA A NG K F K    EL S+F   A G LT  GFL M HLQ+ A+P ETW+DL  LGY   L L
Sbjct:    6 LLTDLDDFTPAAESAFREIFARFDADGDGALSPAEVDAFAVAANGEK-FDKATHAELVSSFETTAAGFLTLAGFLDMLHLQSLADPEETWKDLATLGYAEDLTL 108          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A1Y2GUI0_9FUNG (EF-hand domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GUI0_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 3.640e-22
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1
Query:   37 LLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQLTTSAEE 366
            L+ + G L+  C  AL  +F ++D D DG  S+ ELD FAK  NG   F ++ + E+     +D +G+LT  GFLQM++LQTS+EP ETW+DL+  GYD  L+L  S  E
Sbjct:    9 LVDEDGALTQECEDALVAIFKKYDSDKDGALSNKELDAFAKDTNGD-VFDEDTRTEIKEFLDLDDKGQLTLKGFLQMYNLQTSSEPQETWKDLQKHGYDTKLKLVASRRE 117          
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Match: A0A4P9XQA2_9FUNG (EF-hand domain-containing protein n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XQA2_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 1.960e-21
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   46 DGGELSALCNAALEEVFCRFDVDGDGVFSDSELDEFAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSETWQDLKALGYDNGLQLTTSAEE 366
            D    +  C AAL+E+F RFD DGDG  SD+EL  FA A NG + F +   +E+   F V   G LT  GF++++ LQT++EP ETW DL+  GY++ L+L ++ E+
Sbjct:   20 DDDYFTPACEAALKEIFHRFDKDGDGALSDAELAAFATATNG-EPFDEATLEEIRDNFDVTEAGALTLRGFIELYTLQTTSEPEETWNDLRKHGYNDQLELVSAKEK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122141.4558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R1DKR6_EMIHU1.710e-2853.40Uncharacterized protein n=3 Tax=Emiliania huxleyi ... [more]
A0A0M0K2V2_9EUKA8.250e-2850.89Small nuclear ribonucleoprotein splicing factor n=... [more]
R1FE02_EMIHU9.740e-2554.65Uncharacterized protein (Fragment) n=2 Tax=Emilian... [more]
A0A197JK86_9FUNG2.120e-2446.36EF-hand domain-containing protein n=1 Tax=Linneman... [more]
A0A1S8WA04_9FUNG8.190e-2449.06EF-hand domain-containing protein n=1 Tax=Batracho... [more]
A0A7S4FB56_CHRCT1.320e-2352.81Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S0LAA6_9EUKA1.380e-2345.05Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A507DZK1_9FUNG1.690e-2350.00EF-hand domain-containing protein n=1 Tax=Powellom... [more]
A0A1Y2GUI0_9FUNG3.640e-2244.55EF-hand domain-containing protein n=1 Tax=Lobospor... [more]
A0A4P9XQA2_9FUNG1.960e-2143.93EF-hand domain-containing protein n=1 Tax=Thamnoce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122141contigM-pyrifera_M_contig122141:98..472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue5.6e-22
Seed eggNOG ortholog2903.EOD35607
Hectar predicted targeting categoryother localisation
EggNOG OGs2E13F@1,2S8FY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815741.2722342-CDS-M-pyrifera_M_contig122141:97..4721622815741.2722342-CDS-M-pyrifera_M_contig122141:97..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122141 98..472 +
1692277547.6531618-CDS-M-pyrifera_M_contig122141:97..4721692277547.6531618-CDS-M-pyrifera_M_contig122141:97..472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122141 98..472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122141.4558.1prot_M-pyrifera_M_contig122141.4558.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122141 98..472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122141.4558.1

>prot_M-pyrifera_M_contig122141.4558.1 ID=prot_M-pyrifera_M_contig122141.4558.1|Name=mRNA_M-pyrifera_M_contig122141.4558.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MAAKGKQIAKEALLTDGGELSALCNAALEEVFCRFDVDGDGVFSDSELDE
FAKACNGGKAFSKEEKQELASAFLVDAEGRLTKLGFLQMFHLQTSAEPSE
TWQDLKALGYDNGLQLTTSAEESA*
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mRNA from alignment at M-pyrifera_M_contig122141:98..472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122141.4558.1 ID=mRNA_M-pyrifera_M_contig122141.4558.1|Name=mRNA_M-pyrifera_M_contig122141.4558.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig122141:98..472+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGAAAGGAAAGCAGATAGCGAAGGAGGCGCTCCTGACAGATGG GGGAGAGCTCTCTGCCCTATGCAACGCAGCGCTGGAGGAGGTGTTCTGCC GCTTCGACGTGGACGGCGACGGCGTCTTCTCTGACAGCGAGCTGGATGAG TTTGCGAAGGCTTGCAATGGAGGAAAGGCCTTCAGCAAGGAGGAGAAGCA GGAGCTTGCCTCTGCATTCCTCGTGGACGCGGAGGGGCGGCTGACTAAGC TGGGCTTCCTCCAGATGTTCCACCTCCAGACCAGCGCAGAGCCCAGCGAA ACTTGGCAGGATCTGAAGGCTCTGGGATACGACAATGGCCTCCAGCTCAC CACTTCTGCTGAGGAGTCTGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122141:98..472+

>mRNA_M-pyrifera_M_contig122141.4558.1 ID=mRNA_M-pyrifera_M_contig122141.4558.1|Name=mRNA_M-pyrifera_M_contig122141.4558.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig122141:98..472+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGAAAGGAAAGCAGATAGCGAAGGAGGCGCTCCTGACAGATGG
GGGAGAGCTCTCTGCCCTATGCAACGCAGCGCTGGAGGAGGTGTTCTGCC
GCTTCGACGTGGACGGCGACGGCGTCTTCTCTGACAGCGAGCTGGATGAG
TTTGCGAAGGCTTGCAATGGAGGAAAGGCCTTCAGCAAGGAGGAGAAGCA
GGAGCTTGCCTCTGCATTCCTCGTGGACGCGGAGGGGCGGCTGACTAAGC
TGGGCTTCCTCCAGATGTTCCACCTCCAGACCAGCGCAGAGCCCAGCGAA
ACTTGGCAGGATCTGAAGGCTCTGGGATACGACAATGGCCTCCAGCTCAC
CACTTCTGCTGAGGAGTCTGCCTAGATGGCGGCGAAAGGAAAGCAGATAG
CGAAGGAGGCGCTCCTGACAGATGGGGGAGAGCTCTCTGCCCTATGCAAC
GCAGCGCTGGAGGAGGTGTTCTGCCGCTTCGACGTGGACGGCGACGGCGT
CTTCTCTGACAGCGAGCTGGATGAGTTTGCGAAGGCTTGCAATGGAGGAA
AGGCCTTCAGCAAGGAGGAGAAGCAGGAGCTTGCCTCTGCATTCCTCGTG
GACGCGGAGGGGCGGCTGACTAAGCTGGGCTTCCTCCAGATGTTCCACCT
CCAGACCAGCGCAGAGCCCAGCGAAACTTGGCAGGATCTGAAGGCTCTGG
GATACGACAATGGCCTCCAGCTCACCACTTCTGCTGAGGAGTCTGCCTAG
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