mRNA_M-pyrifera_M_contig122016.4533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig122016.4533.1
Unique NamemRNA_M-pyrifera_M_contig122016.4533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A7K1Z658_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z658_9ACTN)

HSP 1 Score: 163 bits (413), Expect = 1.160e-46
Identity = 78/122 (63.93%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSG--EADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLM 360
            RTA+G+LP+LVSR E A +  +EEL D DAY + YGPRGVH  EPTY  + YWRGPVWPQL+YLLW+ + R    E+  AE+V T+T+ GA  SGLAEYW+GD+G GLGAIPQSWTGLALL 
Sbjct:  249 RTAEGLLPLLVSRSEVARQCVLEELADPDAYCARYGPRGVHAEEPTYDPTAYWRGPVWPQLSYLLWLAVSRVSPEESSVAELVGTSTIRGAVASGLAEYWDGDSGTGLGAIPQSWTGLALLF 370
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BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A6I3BYT3_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3BYT3_9ACTN)

HSP 1 Score: 159 bits (401), Expect = 8.320e-45
Identity = 76/124 (61.29%), Postives = 88/124 (70.97%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAEAQ 372
            RT DG+LP+LV R     R  +E  LD+ AY   YGP GVH  EP++A STYWRGP WPQLAYLLW+  RR G A  A  +   TV+GA  S LAE+WN DTGEGLGAIPQSWTGLA +MAEA+
Sbjct:  251 RTLDGLLPVLVERVPARARRVLETALDDQAYGGLYGPAGVHRAEPSFAPSTYWRGPTWPQLAYLLWIAARRHGFATLAHELAVRTVAGAFRSDLAEFWNPDTGEGLGAIPQSWTGLAWVMAEAE 374
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BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A2E0ZSQ8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0ZSQ8_9ACTN)

HSP 1 Score: 141 bits (356), Expect = 7.280e-40
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAE 366
            RTADG+LP+LV+ +       V +L+D  A+    GP GVH  EPT+  + YWRGPVWPQLAYLL +G  R  +  AAE +  TTV+GA  SGLAEYW+ DTGEG+GAIPQSWTGL LL+AE
Sbjct:   92 RTADGLLPLLVTEESARAARVVADLVDPAAHGGPAGPTGVHRAEPTFDPAGYWRGPVWPQLAYLLVLGAVRF-DPGAAEQLAATTVAGAWASGLAEYWHPDTGEGIGAIPQSWTGLVLLLAE 212
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BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A6G2K5V3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6G2K5V3_9ACTN)

HSP 1 Score: 145 bits (366), Expect = 1.260e-39
Identity = 69/121 (57.02%), Postives = 80/121 (66.12%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMA 363
            RT  G+L +LV  D          L D  AY  A+GP GVH  EP +AA  YWRGP WPQL YLLW+GLRR+G  +AAE V   TV+GA  SGLAEYW+ D G GLGA+PQSW GL LLM+
Sbjct:  260 RTVYGLLGLLVESDAERTAAVAAALTDSGAYGGAFGPTGVHRAEPAFAAGRYWRGPSWPQLNYLLWLGLRRTGRHEAAETVALATVAGATRSGLAEYWDSDDGTGLGAVPQSWAGLCLLMS 380
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BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A381RNU2_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381RNU2_9ZZZZ)

HSP 1 Score: 142 bits (357), Expect = 2.550e-38
Identity = 72/122 (59.02%), Postives = 87/122 (71.31%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAE 366
            RTADG+LP+LV+ +       V +L+D  A+    GP GVH  EPT+  + YWRGPVWPQLAYLL +G  R  +  AAE +  TTV+GA  SGLAEYW+ DTGEGLGA PQSWTGLALL+AE
Sbjct:  255 RTADGLLPLLVTEESARAARVVADLVDPAAHGGPAGPTGVHRAEPTFDPAGYWRGPVWPQLAYLLVLGAVRF-DPGAAEQLAATTVAGAWASGLAEYWHPDTGEGLGATPQSWTGLALLLAE 375
[Close]
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A7K2CRL3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2CRL3_9ACTN)

HSP 1 Score: 137 bits (345), Expect = 1.740e-36
Identity = 68/121 (56.20%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMA 363
            RT DG+LP+LVS +          L D  AY    GP GVH  EP +    YWRGP WPQL+YL+WVGLRR G   AAE V ++TV GA  SG AEYWN D G G GA+PQSWT LA LMA
Sbjct:  265 RTLDGLLPMLVSAEPDRIDAVAAALADPTAYGGICGPAGVHRSEPGFDPCAYWRGPAWPQLSYLMWVGLRRHGWDQAAEAVASSTVRGAMRSGFAEYWNPDDGTGGGAVPQSWTALAALMA 385
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BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A3D5K3Y7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5K3Y7_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 2.680e-36
Identity = 71/130 (54.62%), Postives = 85/130 (65.38%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAEAQRGDDSG 390
            RT D +LP+LV  DER     V +LLD  A+    GP GVH  EP +  + YWRGPVWPQLAYL+ V         AAE++  TTV+GA  SG+AEYWN DTG GLGA+PQSWTGLAL++A   RG   G
Sbjct:  255 RTLDALLPLLVEDDERRTDRVVAQLLDPLAHGGPAGPTGVHRAEPVFDPNAYWRGPVWPQLAYLM-VRAVAPHSPGAAELLVRTTVAGAWASGMAEYWNPDTGAGLGAVPQSWTGLALVLARRPRGGAVG 383
[Close]
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A381RQJ8_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381RQJ8_9ZZZZ)

HSP 1 Score: 135 bits (340), Expect = 1.040e-35
Identity = 67/122 (54.92%), Postives = 83/122 (68.03%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAE 366
            RT D +LP+LV  +       V++LLD  A+    GP GVH  EPT+    YWRGPVWPQLAYL+ + + R     AA + RTT V+GA  SGLAEYWN DTG GLGA+PQSW+GLAL++AE
Sbjct:  268 RTLDAVLPLLVDDEPGRAATVVDQLLDPRAFGGPAGPAGVHRAEPTFNPDAYWRGPVWPQLAYLVVLAVERHSPTAAAHLARTT-VAGAWASGLAEYWNPDTGAGLGAVPQSWSGLALVLAE 388
[Close]
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A2D6PDN7_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A2D6PDN7_9ACTN)

HSP 1 Score: 135 bits (340), Expect = 1.090e-35
Identity = 69/122 (56.56%), Postives = 82/122 (67.21%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMAE 366
            RTAD +LP+LV+ D       V +L D  A     GP GVH  EP +  + YWRGPVWPQLAYLL +G  R     AA++  +TTV+GA  SGLAEYW+ DTG GLGA PQSWTGLALL+AE
Sbjct:  271 RTADALLPLLVTADSXXAAXVVADLCDXXAXGGPXGPXGVHRAEPVFDPTAYWRGPVWPQLAYLLVLGTTRFDPGAAAQLA-STTVAGAWASGLAEYWHPDTGAGLGATPQSWTGLALLLAE 391
[Close]
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Match: A0A2E2WXE1_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E2WXE1_9ACTN)

HSP 1 Score: 135 bits (341), Expect = 1.330e-35
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 RTADGMLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRGPVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEGLGAIPQSWTGLALLMA 363
            RT DG+LP+LV  D R     +++LLD  A+    GP GVH GEP++    YWRGPVWPQLA L+ +   R     A  + RTT V+GA  SGLAEYWN DTG GLGA+PQSW GLALL+A
Sbjct:  298 RTLDGLLPLLVEDDPRRAATVIDQLLDPTAHGGPAGPTGVHRGEPSFDPDAYWRGPVWPQLAXLMVLATDRHSPXSARTLARTT-VAGAWASGLAEYWNADTGGGLGAVPQSWAGLALLLA 417
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig122016.4533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1Z658_9ACTN1.160e-4663.93Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A6I3BYT3_9ACTN8.320e-4561.29Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A2E0ZSQ8_9ACTN7.280e-4058.20Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6G2K5V3_9ACTN1.260e-3957.02Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A381RNU2_9ZZZZ2.550e-3859.02Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A7K2CRL3_9ACTN1.740e-3656.20Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A3D5K3Y7_9ACTN2.680e-3654.62Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A381RQJ8_9ZZZZ1.040e-3554.92Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A2D6PDN7_9ACTN1.090e-3556.56Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A2E2WXE1_9ACTN1.330e-3555.37Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig122016contigM-pyrifera_M_contig122016:110..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score94.4
Seed ortholog evalue4.2e-17
Seed eggNOG ortholog298654.FraEuI1c_2662
Preferred nameygjK
KEGG koko:K03931
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0006950,GO:0006974,GO:0008150,GO:0009987,GO:0015926,GO:0016787,GO:0016798,GO:0033554,GO:0050896,GO:0051716
EggNOG free text desc.Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
EggNOG OGs2IFA4@201174,4ES28@85013,COG1626@1,COG1626@2
COG Functional cat.G
CAZyGH63
Best tax levelFrankiales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size393
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.2189715-CDS-M-pyrifera_M_contig122016:109..4871622815740.2189715-CDS-M-pyrifera_M_contig122016:109..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122016 110..487 -
1692277547.2203062-CDS-M-pyrifera_M_contig122016:109..4871692277547.2203062-CDS-M-pyrifera_M_contig122016:109..487Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig122016 110..487 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815740.2337546-UTR-M-pyrifera_M_contig122016:487..5021622815740.2337546-UTR-M-pyrifera_M_contig122016:487..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122016 488..502 -
1692277547.229419-UTR-M-pyrifera_M_contig122016:487..5021692277547.229419-UTR-M-pyrifera_M_contig122016:487..502Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig122016 488..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig122016.4533.1prot_M-pyrifera_M_contig122016.4533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig122016 110..487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig122016.4533.1

>prot_M-pyrifera_M_contig122016.4533.1 ID=prot_M-pyrifera_M_contig122016.4533.1|Name=mRNA_M-pyrifera_M_contig122016.4533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MLPILVSRDERAHRMAVEELLDEDAYASAYGPRGVHIGEPTYAASTYWRG
PVWPQLAYLLWVGLRRSGEADAAEVVRTTTVSGAGESGLAEYWNGDTGEG
LGAIPQSWTGLALLMAEAQRGDDSG*
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mRNA from alignment at M-pyrifera_M_contig122016:110..502-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig122016.4533.1 ID=mRNA_M-pyrifera_M_contig122016.4533.1|Name=mRNA_M-pyrifera_M_contig122016.4533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig122016:110..502- (Macrocystis pyrifera P11B4 male)
CGCACCGCCGATGGGATGCTGCCGATCCTGGTGTCGCGCGACGAGCGGGC
CCACCGGATGGCGGTCGAAGAGTTGCTCGACGAGGACGCCTACGCCTCGG
CCTACGGGCCGCGCGGCGTGCACATCGGCGAGCCGACGTATGCCGCGTCG
ACCTACTGGCGCGGTCCGGTGTGGCCCCAGCTGGCCTATCTCCTGTGGGT
CGGCCTCCGCCGATCGGGCGAGGCGGACGCGGCCGAGGTCGTACGCACCA
CGACGGTCTCGGGCGCCGGTGAATCGGGACTGGCCGAGTACTGGAACGGC
GATACCGGGGAGGGCCTCGGCGCGATCCCACAGTCGTGGACCGGTCTCGC
CCTCCTCATGGCCGAAGCTCAGCGGGGCGACGACTCGGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig122016:110..502-

>mRNA_M-pyrifera_M_contig122016.4533.1 ID=mRNA_M-pyrifera_M_contig122016.4533.1|Name=mRNA_M-pyrifera_M_contig122016.4533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig122016:110..502- (Macrocystis pyrifera P11B4 male)
ATGCTGCCGATCCTGGTGTCGCGCGACGAGCGGGCCCACCGGATGGCGGT
CGAAGAGTTGCTCGACGAGGACGCCTACGCCTCGGCCTACGGGCCGCGCG
GCGTGCACATCGGCGAGCCGACGTATGCCGCGTCGACCTACTGGCGCGGT
CCGGTGTGGCCCCAGCTGGCCTATCTCCTGTGGGTCGGCCTCCGCCGATC
GGGCGAGGCGGACGCGGCCGAGGTCGTACGCACCACGACGGTCTCGGGCG
CCGGTGAATCGGGACTGGCCGAGTACTGGAACGGCGATACCGGGGAGGGC
CTCGGCGCGATCCCACAGTCGTGGACCGGTCTCGCCCTCCTCATGGCCGA
AGCTCAGCGGGGCGACGACTCGGGCTGAATGCTGCCGATCCTGGTGTCGC
GCGACGAGCGGGCCCACCGGATGGCGGTCGAAGAGTTGCTCGACGAGGAC
GCCTACGCCTCGGCCTACGGGCCGCGCGGCGTGCACATCGGCGAGCCGAC
GTATGCCGCGTCGACCTACTGGCGCGGTCCGGTGTGGCCCCAGCTGGCCT
ATCTCCTGTGGGTCGGCCTCCGCCGATCGGGCGAGGCGGACGCGGCCGAG
GTCGTACGCACCACGACGGTCTCGGGCGCCGGTGAATCGGGACTGGCCGA
GTACTGGAACGGCGATACCGGGGAGGGCCTCGGCGCGATCCCACAGTCGT
GGACCGGTCTCGCCCTCCTCATGGCCGAAGCTCAGCGGGGCGACGACTCG
GGCTGA
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