mRNA_M-pyrifera_M_contig121965.4514.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121965.4514.1
Unique NamemRNA_M-pyrifera_M_contig121965.4514.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A2Y9MUB8_DELLE (Mannosyltransferase n=14 Tax=Cetacea TaxID=9721 RepID=A0A2Y9MUB8_DELLE)

HSP 1 Score: 85.9 bits (211), Expect = 4.380e-17
Identity = 59/134 (44.03%), Postives = 74/134 (55.22%), Query Frame = 1 
Query:    1 WAGLVALRLLMAAAP--GYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSIVPPLASALPLALLQLLHCSWG--------WALLLGPRAVVVSLSLLLDAAVAVAAWRQGEDAGPALVALAGSWPMAVF 369
            W  L  LRL+    P  GY HPDE+FQSPEV A   LG+ A  PWEF  +  CR++V PL ++     L  L   WG        +ALL+GPR ++ SLS  LD AV   A R G +   ALV L+GS+   VF
Sbjct:    9 WGSLSLLRLVWCLLPQTGYVHPDEFFQSPEVMAEDVLGIKAARPWEFHPSSPCRTVVFPLLTSGSAFWLLRLWEEWGPWPGSVSGYALLVGPRLLLASLSFALDLAVYHLAPRWGAERWNALVLLSGSYVTLVF 142
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A6J0X0V2_ODOVR (Mannosyltransferase n=1 Tax=Odocoileus virginianus texanus TaxID=9880 RepID=A0A6J0X0V2_ODOVR)

HSP 1 Score: 80.5 bits (197), Expect = 3.520e-15
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 1 
Query:    1 WAGLVALRLLMAAAP--GYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSIVPPLASALPLALLQLLHCSWG--------WALLLGPRAVVVSLSLLLDAAVAVAAWRQGEDAGPALVALAGSWPMAVF 369
            W  L  LRL+    P  GY HPDE+FQSPEV A   LG+ A  PWEF  +  CR++V PL ++     L  L   WG        +ALL+GPR ++ +LS  LD AV   A   G +   AL+ L+GS+   VF
Sbjct:  163 WGSLGLLRLVWCLLPQTGYVHPDEFFQSPEVMAEDVLGVEAARPWEFHPSSPCRTVVFPLLTSGSAFWLLRLWEEWGPWPGAVSGYALLVGPRLLLTTLSFALDLAVYHLAPAWGAERWNALLLLSGSYVTLVF 296
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A1X2HKL7_9FUNG (Mannosyltransferase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2HKL7_9FUNG)

HSP 1 Score: 76.3 bits (186), Expect = 1.050e-13
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 WAGLVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSIVPP-LASALPLALLQLLHCSWGWALLLGPRAVVVSL 264
            + GLV LR +MA+ PGY HPDE+FQSPE+ A   LG+ +L PWEF   HA RSI+ P L + LPL L+ L++  W   L+  P+A+ + L
Sbjct:    9 YVGLVWLRWMMASLPGYIHPDEFFQSPEITARTVLGVDSLTPWEFQPEHAARSIIIPFLTTGLPLWLMALVN-QWQSILIEVPQALTLFL 97
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A4P9YYB1_9FUNG (Mannosyltransferase n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YYB1_9FUNG)

HSP 1 Score: 70.1 bits (170), Expect = 2.610e-12
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   10 LVALRLLMAAAPGYPHPDEWFQSPEVAA-HGLGLAALVPWEFSAAHACRSIVPPLAS 177
            L  LRLL+A APGY HPDE+FQSPE++A H L +   VPWE+ A + CRSI+ P+AS
Sbjct:   12 LYLLRLLLALAPGYVHPDEFFQSPEISAGHVLDVRNWVPWEYDATYPCRSILFPMAS 68
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A1X2GLW8_9FUNG (Mannosyltransferase n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GLW8_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 3.130e-12
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 1 
Query:   10 LVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSI-VPPLASALPLALL-QLLHCSWGW-------ALLLGPRAVVVSLSLLLD 279
            LV +RLL+A +PGY HPDE+FQSPE+ A   L + A VPWE+   HA RSI +P L + LP  LL Q  H    W       AL    R    +LSL+ D
Sbjct:   12 LVGIRLLLALSPGYIHPDEYFQSPEIMARSMLNIDAFVPWEYQPEHAARSILIPFLTTGLPFWLLEQYAHWFGTWTDVFPTVALFTVERVAFFALSLITD 111
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A4P9XV19_9FUNG (Mannosyltransferase n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XV19_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 4.370e-12
Identity = 53/139 (38.13%), Postives = 70/139 (50.36%), Query Frame = 1 
Query:    1 WAGLVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSIV-PPLASALPLALLQLLHCSWGWALLLGPRAVVVS--------------LSLLLDAAVAVAAWRQGEDAGPALVALAGSWPMAVF 369
            +A L+ LRL  A APGY HPDE+FQSPE++A   L +   VPWE+     CRSIV P LA+ LP  LL+ L     W   LG    V++               S+L+D AV       G+D    L+  A S  + V+
Sbjct:    9 YALLLLLRLCCALAPGYLHPDEFFQSPEISAQSVLNVHGFVPWEYQPDQPCRSIVIPGLATGLPFFLLKCLQTVLEW---LGYAVTVITPVSVYATTRVSAFLYSMLVDLAVHRICRLNGQDPWRPLLVAASSHALLVY 144
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A163K9C8_ABSGL (Mannosyltransferase n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163K9C8_ABSGL)

HSP 1 Score: 67.4 bits (163), Expect = 1.320e-10
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   10 LVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSI-VPPLASALPLALLQLLHCSW---------GWALLLGPRAVVVSLSLLLDAAVAVAAWRQGED 318
            L+ LR +MA+ PGY HPDE+FQSPE+ A   L +  ++PWEF + HA RSI +P L + LP  L+ L+   W            L L  R+    L+L+ D  V     R G+D
Sbjct:   12 LLWLRWMMASLPGYIHPDEFFQSPEITARAVLKVDTMIPWEFQSDHAARSILIPFLTTGLPFWLMTLVQ-RWMEVATEVPQALTLFLVERSASFGLTLVTDYVVYQICQRMGKD 124
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A0D2WP10_CAPO3 (Mannosyltransferase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WP10_CAPO3)

HSP 1 Score: 67.0 bits (162), Expect = 1.820e-10
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 1 
Query:   10 LVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGL-AALVPWEFSAAHA-CRSIV-PPLASALPLALLQLLHCSWG----WALLLGPRAVVVSLSLLLDAAVAVAAWRQGEDAGPALVA-----LAGSWPMAVF 369
            L+ +R    A PGY HPDE+FQSPEVAA   L L +A +PWEF+      RS V P L S  P ALL+ L  +      WALL+ PR V++  SL+LD+ V + A R      PAL A     LA S+   VF
Sbjct:  198 LMLVRAASIALPGYIHPDEFFQSPEVAARDVLELDSAFIPWEFANTETPSRSAVFPLLISGFPFALLKALFGTVAQIPPWALLIAPRIVMLFSSLVLDSQV-LNAMRWLYPTQPALHATTLLVLASSFVTVVF 329
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A0D2X2R5_CAPO3 (Mannosyltransferase n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X2R5_CAPO3)

HSP 1 Score: 67.0 bits (162), Expect = 1.870e-10
Identity = 59/133 (44.36%), Postives = 74/133 (55.64%), Query Frame = 1 
Query:   10 LVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGL-AALVPWEFSAAHA-CRSIV-PPLASALPLALLQLLHCSWG----WALLLGPRAVVVSLSLLLDAAVAVAAWRQGEDAGPALVA-----LAGSWPMAVF 369
            L+ +R    A PGY HPDE+FQSPEVAA   L L +A +PWEF+      RS V P L S  P ALL+ L  +      WALL+ PR V++  SL+LD+ V + A R      PAL A     LA S+   VF
Sbjct:  198 LMLVRAASIALPGYIHPDEFFQSPEVAARDVLELDSAFIPWEFANTETPSRSAVFPLLISGFPFALLKALFGTVAQIPPWALLIAPRIVMLFSSLVLDSQV-LNAMRWLYPTQPALHATTLLVLASSFVTVVF 329
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BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Match: A0A077WIW3_9FUNG (Mannosyltransferase n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WIW3_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 2.510e-10
Identity = 25/59 (42.37%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 WAGLVALRLLMAAAPGYPHPDEWFQSPEVAAHG-LGLAALVPWEFSAAHACRSIVPPLA 174
            +  L+ +R + ++ PGY HPDE+FQSPE+ A+  L + + +PWEF   +A R+++PP+A
Sbjct:    6 YGALLWVRWIASSTPGYVHPDEYFQSPEITANAILNIDSYIPWEFEKENAIRAVIPPIA 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121965.4514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Y9MUB8_DELLE4.380e-1744.03Mannosyltransferase n=14 Tax=Cetacea TaxID=9721 Re... [more]
A0A6J0X0V2_ODOVR3.520e-1541.79Mannosyltransferase n=1 Tax=Odocoileus virginianus... [more]
A0A1X2HKL7_9FUNG1.050e-1348.89Mannosyltransferase n=1 Tax=Absidia repens TaxID=9... [more]
A0A4P9YYB1_9FUNG2.610e-1259.65Mannosyltransferase n=1 Tax=Syncephalis pseudoplum... [more]
A0A1X2GLW8_9FUNG3.130e-1246.00Mannosyltransferase n=1 Tax=Hesseltinella vesiculo... [more]
A0A4P9XV19_9FUNG4.370e-1238.13Mannosyltransferase n=1 Tax=Thamnocephalis sphaero... [more]
A0A163K9C8_ABSGL1.320e-1039.47Mannosyltransferase n=1 Tax=Absidia glauca TaxID=4... [more]
A0A0D2WP10_CAPO31.820e-1044.36Mannosyltransferase n=1 Tax=Capsaspora owczarzaki ... [more]
A0A0D2X2R5_CAPO31.870e-1044.36Mannosyltransferase n=2 Tax=Capsaspora owczarzaki ... [more]
A0A077WIW3_9FUNG2.510e-1042.37Mannosyltransferase n=1 Tax=Lichtheimia ramosa Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121965contigM-pyrifera_M_contig121965:149..517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog118797.XP_007465947.1
Preferred namePIGZ
KEGG koko:K08098
KEGG ReactionR07129
KEGG Pathwayko00563,map00563
Hectar predicted targeting categoryother localisation
GOsGO:0000026,GO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019637,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.Phosphatidylinositol glycan anchor biosynthesis, class Z
EggNOG OGs38GY4@33154,3BGJR@33208,3CV0Q@33213,3J6GD@40674,483CV@7711,48Z3H@7742,4J44R@91561,KOG4123@1,KOG4123@2759
COG Functional cat.G
CAZyGT22
Best tax levelCetartiodactyla
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size369
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.802887-UTR-M-pyrifera_M_contig121965:148..1781622815738.802887-UTR-M-pyrifera_M_contig121965:148..178Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121965 149..178 +
1692277546.3591807-UTR-M-pyrifera_M_contig121965:148..1781692277546.3591807-UTR-M-pyrifera_M_contig121965:148..178Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig121965 149..178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815738.8176808-CDS-M-pyrifera_M_contig121965:178..5171622815738.8176808-CDS-M-pyrifera_M_contig121965:178..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121965 179..517 +
1692277546.3696594-CDS-M-pyrifera_M_contig121965:178..5171692277546.3696594-CDS-M-pyrifera_M_contig121965:178..517Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121965 179..517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121965.4514.1prot_M-pyrifera_M_contig121965.4514.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121965 179..517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121965.4514.1

>prot_M-pyrifera_M_contig121965.4514.1 ID=prot_M-pyrifera_M_contig121965.4514.1|Name=mRNA_M-pyrifera_M_contig121965.4514.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MAAAPGYPHPDEWFQSPEVAAHGLGLAALVPWEFSAAHACRSIVPPLASA
LPLALLQLLHCSWGWALLLGPRAVVVSLSLLLDAAVAVAAWRQGEDAGPA
LVALAGSWPMAVF
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mRNA from alignment at M-pyrifera_M_contig121965:149..517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121965.4514.1 ID=mRNA_M-pyrifera_M_contig121965.4514.1|Name=mRNA_M-pyrifera_M_contig121965.4514.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig121965:149..517+ (Macrocystis pyrifera P11B4 male)
TGGGCGGGACTGGTGGCGCTGCGGCTGCTGATGGCGGCGGCGCCAGGGTA
CCCGCACCCGGACGAGTGGTTCCAGTCGCCCGAGGTGGCGGCGCACGGCC
TGGGCTTGGCGGCGCTCGTGCCCTGGGAGTTCTCTGCGGCGCACGCGTGC
AGGAGCATCGTCCCCCCACTGGCCAGCGCCCTCCCCCTGGCGCTGCTGCA
GCTGCTGCACTGCTCCTGGGGCTGGGCACTGCTCCTGGGGCCCAGGGCAG
TCGTCGTCTCCCTCTCTCTCCTCCTCGACGCTGCGGTGGCCGTGGCCGCC
TGGAGACAGGGAGAAGACGCGGGCCCTGCGTTGGTGGCGTTGGCTGGGAG
CTGGCCTATGGCTGTGTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121965:149..517+

>mRNA_M-pyrifera_M_contig121965.4514.1 ID=mRNA_M-pyrifera_M_contig121965.4514.1|Name=mRNA_M-pyrifera_M_contig121965.4514.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig121965:149..517+ (Macrocystis pyrifera P11B4 male)
ATGGCGGCGGCGCCAGGGTACCCGCACCCGGACGAGTGGTTCCAGTCGCC
CGAGGTGGCGGCGCACGGCCTGGGCTTGGCGGCGCTCGTGCCCTGGGAGT
TCTCTGCGGCGCACGCGTGCAGGAGCATCGTCCCCCCACTGGCCAGCGCC
CTCCCCCTGGCGCTGCTGCAGCTGCTGCACTGCTCCTGGGGCTGGGCACT
GCTCCTGGGGCCCAGGGCAGTCGTCGTCTCCCTCTCTCTCCTCCTCGACG
CTGCGGTGGCCGTGGCCGCCTGGAGACAGGGAGAAGACGCGGGCCCTGCG
TTGGTGGCGTTGGCTGGGAGCTGGCCTATGGCTGTGTTCATGGCGGCGGC
GCCAGGGTACCCGCACCCGGACGAGTGGTTCCAGTCGCCCGAGGTGGCGG
CGCACGGCCTGGGCTTGGCGGCGCTCGTGCCCTGGGAGTTCTCTGCGGCG
CACGCGTGCAGGAGCATCGTCCCCCCACTGGCCAGCGCCCTCCCCCTGGC
GCTGCTGCAGCTGCTGCACTGCTCCTGGGGCTGGGCACTGCTCCTGGGGC
CCAGGGCAGTCGTCGTCTCCCTCTCTCTCCTCCTCGACGCTGCGGTGGCC
GTGGCCGCCTGGAGACAGGGAGAAGACGCGGGCCCTGCGTTGGTGGCGTT
GGCTGGGAGCTGGCCTATGGCTGTGTTC
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