mRNA_M-pyrifera_M_contig121599.4438.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121599.4438.1
Unique NamemRNA_M-pyrifera_M_contig121599.4438.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A2D5H0R3_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2D5H0R3_9PLAN)

HSP 1 Score: 310 bits (794), Expect = 2.710e-105
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR
Sbjct:   98 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 256          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A3E0N260_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0N260_9BACT)

HSP 1 Score: 236 bits (602), Expect = 4.260e-76
Identity = 118/159 (74.21%), Postives = 134/159 (84.28%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYESPLG+ALTAMTLLVVVSGFVGRYLMNQ S EIREKNAQL +L+ +YD  + ELA  PQ+ L +R+F+GF SR A    L E++ P+T+ A  SSPREM+RLAEAIADVEYAIATHEKFK WFGKWLK HI+ISF+LYGLLALHVYFAIYFGLRWF 
Sbjct:   98 KYESPLGVALTAMTLLVVVSGFVGRYLMNQFSKEIREKNAQLDQLKEVYDRARNELAAHPQQALAIRSFSGFVSRLAVGLLLPEETSPRTSTASVSSPREMIRLAEAIADVEYAIATHEKFKTWFGKWLKFHIVISFVLYGLLALHVYFAIYFGLRWFE 256          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A5B9QP85_9BACT (Uncharacterized protein n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9QP85_9BACT)

HSP 1 Score: 204 bits (519), Expect = 1.660e-63
Identity = 108/159 (67.92%), Postives = 122/159 (76.73%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYESPLGIALTAMTLLVV+SGFVGRYLM Q S EIREK   L  L+ IYD  + +L  + Q  L ++ FTGFFSR  A FFL+E S   ++ A   SPREMVRLAE+IADVEYAI TH KFK WFGKWLK HI+ISFILYGLL LHV+ AI+FGLRW R
Sbjct:   98 KYESPLGIALTAMTLLVVLSGFVGRYLMQQFSQEIREKKTLLDGLKAIYDQIRTKLVTQHQPALAIQPFTGFFSRLTASFFLSENSADFSSSAETPSPREMVRLAESIADVEYAIDTHGKFKTWFGKWLKFHIVISFILYGLLILHVWTAIHFGLRWVR 256          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A2G1VZA8_9BACT (Uncharacterized protein n=4 Tax=Pirellulaceae TaxID=2691357 RepID=A0A2G1VZA8_9BACT)

HSP 1 Score: 184 bits (466), Expect = 1.650e-55
Identity = 98/162 (60.49%), Postives = 119/162 (73.46%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTE---KSLPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KY+S LGIALTAMTLLVVVSGF+GRYLM+  + EI+ K A L +LE  YD +  EL + P     +R F GFF+R +A FFL+E   +S   T DA       +VRLAE+IADVEYAIATHE FK WFGKWLK HI+ISF+LYGL+ +HVY+A+YFGLRWF 
Sbjct:   98 KYDSLLGIALTAMTLLVVVSGFIGRYLMSGFAKEIKAKKAMLSDLETAYDQSVVELGSDPVTAQSLRPFAGFFTRLSASFFLSEPQQESRRATRDALT-----LVRLAESIADVEYAIATHEDFKKWFGKWLKFHIVISFVLYGLMLVHVYYAVYFGLRWFE 254          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A518L5E4_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TBK1r TaxID=2527963 RepID=A0A518L5E4_9BACT)

HSP 1 Score: 182 bits (463), Expect = 5.420e-55
Identity = 94/162 (58.02%), Postives = 115/162 (70.99%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKS---LPQTNDAFASSPREMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KY S LGI LTAMTLLVVVSGF+GRYLM+  +TEI+ K A L EL+  YD    E+ + P     +R F+GFFSR  A FFL+E S   + Q           +VRLAE+IADVEYAIATH+ FK+WFGKWLK HI+ISF+LY L+ +HVY+A+YFGLRWF 
Sbjct:   98 KYNSALGITLTAMTLLVVVSGFIGRYLMSGFATEIKAKKAMLSELQTAYDQAVVEVGSHPASAENLRPFSGFFSRLTAGFFLSEASDTAITQGQSTLGRKTITLVRLAESIADVEYAIATHQDFKLWFGKWLKFHIVISFVLYALMFVHVYYAVYFGLRWFE 259          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: M2B3M8_9BACT (Putative membrane protein n=1 Tax=Rhodopirellula europaea 6C TaxID=1263867 RepID=M2B3M8_9BACT)

HSP 1 Score: 181 bits (459), Expect = 1.890e-54
Identity = 98/159 (61.64%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPRE--MVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRW 471
            +Y SPLGI LTAMTLLVVVSGFVGRYLM+  + EIR K A L EL+  YD    ++A+ P     +R FTGFFSR AA FFL E      N++ A+S     +VRLAE+IADVEYAIATHE FK WFGKWLK HI ISF LY L+ +HVY+A+YFGLRW
Sbjct:   98 RYNSPLGITLTAMTLLVVVSGFVGRYLMSGFTKEIRAKKAMLSELQSAYDQAATDIASNPATARSLRPFTGFFSRLAASFFLAES----INESQATSHDSITLVRLAESIADVEYAIATHEDFKRWFGKWLKFHIAISFALYALMFVHVYYAVYFGLRW 252          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A518K7I6_9BACT (Uncharacterized protein n=1 Tax=Botrimarina mediterranea TaxID=2528022 RepID=A0A518K7I6_9BACT)

HSP 1 Score: 179 bits (453), Expect = 1.520e-53
Identity = 96/160 (60.00%), Postives = 116/160 (72.50%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPR-EMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYES +GIALTAMTLLVVVSGF+GRYLM+  + EIRE+ A L EL+  YD     + + P+    +R F+GFFSR  A FFL+E   P T  + A +    +VRLAE+IADVEYAI THE FK WFGKWLK HI ISFILYGL+ +HV +A+YFGLRWF 
Sbjct:   98 KYESVVGIALTAMTLLVVVSGFIGRYLMSGFAKEIRERKAMLTELQTAYDEASVAVGSNPEAANTLRPFSGFFSRLMAGFFLSE---PTTEPSVAKANSITLVRLAESIADVEYAIRTHEDFKTWFGKWLKFHIAISFILYGLMFIHVNYAVYFGLRWFE 254          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A3B1D7P8_9ZZZZ (DUF547 domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1D7P8_9ZZZZ)

HSP 1 Score: 186 bits (471), Expect = 3.510e-53
Identity = 92/163 (56.44%), Postives = 121/163 (74.23%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPR-----EMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWF 474
            K+ESPLGIALT +TL+VV+SGFVGRYLM Q S EIREK   L +L++IY  T  +LA +PQ+   +R F+GF+SR  A  FL E+++ +      S P      E+++LAE+IAD+EYAI THE FK WFGKWLK HI+ISF+LYGL+ LH++ A++FGLRWF
Sbjct:   98 KFESPLGIALTGLTLVVVISGFVGRYLMGQFSKEIREKKTMLNQLKLIYQQTANKLATQPQQAETIRFFSGFYSRLTAGLFLREETIEENITVSPSLPHNPSGSEIIQLAESIADIEYAIETHEFFKQWFGKWLKFHIVISFVLYGLMILHIWGAVHFGLRWF 260          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A2E0ZF68_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A2E0ZF68_9CHLR)

HSP 1 Score: 176 bits (447), Expect = 1.230e-52
Identity = 96/160 (60.00%), Postives = 114/160 (71.25%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPR-EMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYES +GIALTAMTLLVV+SGF+GRYLM+  + EIREK A L EL+  YD     + + P     +R F+GFFSR  A FFL E   P T  A + +    +VRLAE+IADVEYAI THE FK WFGKWLK HI ISFILY L+ +HVY+A+YFGLRWF 
Sbjct:   98 KYESVVGIALTAMTLLVVISGFIGRYLMSGFAKEIREKKAMLTELQSNYDEAVIAVGSSPATAKSLRPFSGFFSRLMAGFFLPE---PSTEPAVSKTDSITLVRLAESIADVEYAIRTHEDFKAWFGKWLKFHIAISFILYALMFVHVYYAVYFGLRWFE 254          
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Match: A0A5B9MN73_9BACT (Ferric reductase like transmembrane component n=1 Tax=Stieleria maiorica TaxID=2795974 RepID=A0A5B9MN73_9BACT)

HSP 1 Score: 176 bits (445), Expect = 2.460e-52
Identity = 94/160 (58.75%), Postives = 112/160 (70.00%), Query Frame = 1
Query:    1 KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYDHTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPR-EMVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFAIYFGLRWFR 477
            KYES +GIALTAMTLLVVVSGFVGRYLM+  + EIREK   L EL+  YD         P     +R F+GFF+R  A FFL E   P T  + A +    +VRLAE+IADVEYAI THE FK WFGKWLK HI++SF+LY L+ +HVY+A+YFGLRWF 
Sbjct:   98 KYESVVGIALTAMTLLVVVSGFVGRYLMSGFAKEIREKKTMLNELQAAYDEALVNTQADPSAAKCLRPFSGFFTRLMAGFFLPE---PSTEPSVARADSITLVRLAESIADVEYAIRTHEDFKQWFGKWLKFHIVLSFVLYALMFVHVYYAVYFGLRWFE 254          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121599.4438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5H0R3_9PLAN2.710e-105100.00Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A3E0N260_9BACT4.260e-7674.21Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5B9QP85_9BACT1.660e-6367.92Uncharacterized protein n=1 Tax=Bythopirellula gok... [more]
A0A2G1VZA8_9BACT1.650e-5560.49Uncharacterized protein n=4 Tax=Pirellulaceae TaxI... [more]
A0A518L5E4_9BACT5.420e-5558.02Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]
M2B3M8_9BACT1.890e-5461.64Putative membrane protein n=1 Tax=Rhodopirellula e... [more]
A0A518K7I6_9BACT1.520e-5360.00Uncharacterized protein n=1 Tax=Botrimarina medite... [more]
A0A3B1D7P8_9ZZZZ3.510e-5356.44DUF547 domain-containing protein n=1 Tax=hydrother... [more]
A0A2E0ZF68_9CHLR1.230e-5260.00Uncharacterized protein n=1 Tax=Anaerolineaceae ba... [more]
A0A5B9MN73_9BACT2.460e-5258.75Ferric reductase like transmembrane component n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121599contigM-pyrifera_M_contig121599:53..532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score139.8
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog1210884.HG799464_gene10993
Hectar predicted targeting categorysignal peptide
EggNOG OGs293YE@1,314M9@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.8158774-CDS-M-pyrifera_M_contig121599:52..5321622815734.8158774-CDS-M-pyrifera_M_contig121599:52..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121599 53..532 -
1692277544.5385478-CDS-M-pyrifera_M_contig121599:52..5321692277544.5385478-CDS-M-pyrifera_M_contig121599:52..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121599 53..532 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121599.4438.1prot_M-pyrifera_M_contig121599.4438.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121599 53..532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121599.4438.1

>prot_M-pyrifera_M_contig121599.4438.1 ID=prot_M-pyrifera_M_contig121599.4438.1|Name=mRNA_M-pyrifera_M_contig121599.4438.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
KYESPLGIALTAMTLLVVVSGFVGRYLMNQISTEIREKNAQLGELEIIYD
HTKKELANRPQETLIVRNFTGFFSRQAARFFLTEKSLPQTNDAFASSPRE
MVRLAEAIADVEYAIATHEKFKMWFGKWLKLHIIISFILYGLLALHVYFA
IYFGLRWFR*
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mRNA from alignment at M-pyrifera_M_contig121599:53..532-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121599.4438.1 ID=mRNA_M-pyrifera_M_contig121599.4438.1|Name=mRNA_M-pyrifera_M_contig121599.4438.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig121599:53..532- (Macrocystis pyrifera P11B4 male)
AAGTACGAAAGCCCACTTGGTATCGCTCTGACAGCGATGACGTTGCTGGT TGTGGTCAGCGGCTTTGTGGGACGATACCTGATGAACCAGATCTCTACAG AAATCCGCGAGAAGAATGCCCAGCTTGGTGAATTGGAAATAATTTATGAT CACACTAAGAAAGAACTGGCGAATCGTCCTCAGGAAACCCTCATAGTCCG TAACTTCACTGGCTTCTTTTCCAGACAGGCTGCGAGATTCTTCCTTACAG AGAAATCCTTGCCGCAAACAAATGATGCCTTTGCTTCGTCCCCTCGCGAA ATGGTTCGCTTGGCCGAGGCCATTGCCGATGTCGAGTACGCCATAGCAAC CCATGAGAAATTTAAAATGTGGTTTGGAAAGTGGCTCAAGTTGCACATCA TAATCTCGTTCATTTTGTACGGACTGTTGGCTCTACACGTGTACTTCGCG ATCTATTTTGGTCTGAGGTGGTTTAGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121599:53..532-

>mRNA_M-pyrifera_M_contig121599.4438.1 ID=mRNA_M-pyrifera_M_contig121599.4438.1|Name=mRNA_M-pyrifera_M_contig121599.4438.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig121599:53..532- (Macrocystis pyrifera P11B4 male)
AAGTACGAAAGCCCACTTGGTATCGCTCTGACAGCGATGACGTTGCTGGT
TGTGGTCAGCGGCTTTGTGGGACGATACCTGATGAACCAGATCTCTACAG
AAATCCGCGAGAAGAATGCCCAGCTTGGTGAATTGGAAATAATTTATGAT
CACACTAAGAAAGAACTGGCGAATCGTCCTCAGGAAACCCTCATAGTCCG
TAACTTCACTGGCTTCTTTTCCAGACAGGCTGCGAGATTCTTCCTTACAG
AGAAATCCTTGCCGCAAACAAATGATGCCTTTGCTTCGTCCCCTCGCGAA
ATGGTTCGCTTGGCCGAGGCCATTGCCGATGTCGAGTACGCCATAGCAAC
CCATGAGAAATTTAAAATGTGGTTTGGAAAGTGGCTCAAGTTGCACATCA
TAATCTCGTTCATTTTGTACGGACTGTTGGCTCTACACGTGTACTTCGCG
ATCTATTTTGGTCTGAGGTGGTTTAGGTAAAAGTACGAAAGCCCACTTGG
TATCGCTCTGACAGCGATGACGTTGCTGGTTGTGGTCAGCGGCTTTGTGG
GACGATACCTGATGAACCAGATCTCTACAGAAATCCGCGAGAAGAATGCC
CAGCTTGGTGAATTGGAAATAATTTATGATCACACTAAGAAAGAACTGGC
GAATCGTCCTCAGGAAACCCTCATAGTCCGTAACTTCACTGGCTTCTTTT
CCAGACAGGCTGCGAGATTCTTCCTTACAGAGAAATCCTTGCCGCAAACA
AATGATGCCTTTGCTTCGTCCCCTCGCGAAATGGTTCGCTTGGCCGAGGC
CATTGCCGATGTCGAGTACGCCATAGCAACCCATGAGAAATTTAAAATGT
GGTTTGGAAAGTGGCTCAAGTTGCACATCATAATCTCGTTCATTTTGTAC
GGACTGTTGGCTCTACACGTGTACTTCGCGATCTATTTTGGTCTGAGGTG
GTTTAGGTAA
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