mRNA_M-pyrifera_M_contig121515.4425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121515.4425.1
Unique NamemRNA_M-pyrifera_M_contig121515.4425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: D8LE82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE82_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.600e-17
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LEAVRLERR+GN KG +SLM KALQECPGSGVLWAEE L AQR++QK
Sbjct:    3 LEAVRLERRSGNSKGVDSLMTKALQECPGSGVLWAEEALAAQRSEQK 49
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: K0R5N5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R5N5_THAOC)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-9
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LEA+RLERRAGN K A SLMA+ALQECPGSG L AE I+ + R +QK
Sbjct:  814 LEAIRLERRAGNDKLAVSLMARALQECPGSGRLLAENIITSPRVEQK 860
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A7S2USD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.170e-9
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    4 EAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            EA+RLERR GN K AE+L AKALQ+CP SG++WAEEI  A R  Q+
Sbjct:  166 EAIRLERRHGNSKLAENLTAKALQDCPSSGIIWAEEISCAPRHQQR 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A7S3MBI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MBI4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 7.770e-9
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LE +RLERR+G+ K AESLMAKAL+ECP SG LWAEE+L   +  QK
Sbjct:  222 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 268
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.120e-9
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LE +RLERR+G+ K AESLMAKAL+ECP SG LWAEE+L   +  QK
Sbjct:  782 LECIRLERRSGHEKLAESLMAKALRECPKSGALWAEELLTCAKPLQK 828
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A7S2EY21_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY21_TRICV)

HSP 1 Score: 58.2 bits (139), Expect = 1.250e-8
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            +EAVRLERRAGN K A +LMA+ALQECP SG+L AE I  A R +QK
Sbjct:  403 VEAVRLERRAGNDKLASALMARALQECPSSGLLLAENIATAPRPEQK 449
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A6U1QKH3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1QKH3_CYCTE)

HSP 1 Score: 57.8 bits (138), Expect = 1.290e-8
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LEA+RLERRAGN K A +LMA+ALQECP SG L AE I+ A R +QK
Sbjct:   99 LEAIRLERRAGNDKLAVTLMARALQECPTSGKLLAENIMTAPRVEQK 145
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A7S4QCV6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QCV6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.330e-8
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            +EAVRLERRAGN K A +LMA+ALQ+CP SG+L AE I+ + R +QK
Sbjct:  860 VEAVRLERRAGNDKLASALMARALQDCPSSGLLLAENIITSPRVEQK 906
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A448ZL49_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZL49_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.330e-8
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LEA RLERR+GN K AESLMA+ALQECP SG L AE I  A R +QK
Sbjct:  895 LEATRLERRSGNTKLAESLMARALQECPKSGRLLAENIATAPRVEQK 941
[Close]
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Match: A0A6V0AK95_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A6V0AK95_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.330e-8
Identity = 33/47 (70.21%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK 141
            LEA RLERR+GN K AESLMA+ALQECP SG L AE I  A R +QK
Sbjct: 1039 LEATRLERRSGNTKLAESLMARALQECPKSGRLLAENIATAPRVEQK 1085
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121515.4425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE82_ECTSI2.600e-1780.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0R5N5_THAOC1.910e-970.21Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2USD3_9STRA6.170e-965.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3MBI4_9STRA7.770e-965.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3MCI9_9STRA9.120e-965.96Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2EY21_TRICV1.250e-868.09Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6U1QKH3_CYCTE1.290e-868.09Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4QCV6_9STRA2.330e-863.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448ZL49_9STRA2.330e-870.21Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6V0AK95_9STRA2.330e-870.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121515contigM-pyrifera_M_contig121515:47..187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5e-08
Seed eggNOG ortholog159749.K0R5N5
KEGG koko:K12855
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003824,GO:0004553,GO:0004565,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005684,GO:0005737,GO:0005773,GO:0006139,GO:0006259,GO:0006304,GO:0006305,GO:0006306,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009266,GO:0009409,GO:0009628,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015030,GO:0015925,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016607,GO:0016787,GO:0016798,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030312,GO:0030532,GO:0031047,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035257,GO:0035258,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046540,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050681,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051427,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065003,GO:0065007,GO:0070013,GO:0070920,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0080188,GO:0090304,GO:0090351,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:0140110,GO:1901360,GO:1901363,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903798,GO:1903800,GO:1990904,GO:2000112,GO:2000628,GO:2000630,GO:2000634,GO:2000636,GO:2000637,GO:2001141
EggNOG free text desc.HAT (Half-A-TPR) repeats
EggNOG OGs2XAUY@2836,KOG0495@1,KOG0495@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_001260.1
COG Functional cat.A
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815734.1565614-CDS-M-pyrifera_M_contig121515:46..1871622815734.1565614-CDS-M-pyrifera_M_contig121515:46..187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121515 47..187 -
1692277544.2186558-CDS-M-pyrifera_M_contig121515:46..1871692277544.2186558-CDS-M-pyrifera_M_contig121515:46..187Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121515 47..187 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121515.4425.1prot_M-pyrifera_M_contig121515.4425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121515 47..187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121515.4425.1

>prot_M-pyrifera_M_contig121515.4425.1 ID=prot_M-pyrifera_M_contig121515.4425.1|Name=mRNA_M-pyrifera_M_contig121515.4425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
LEAVRLERRAGNGKGAESLMAKALQECPGSGVLWAEEILVAQRADQK
back to top

mRNA from alignment at M-pyrifera_M_contig121515:47..187-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121515.4425.1 ID=mRNA_M-pyrifera_M_contig121515.4425.1|Name=mRNA_M-pyrifera_M_contig121515.4425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig121515:47..187- (Macrocystis pyrifera P11B4 male)
CTCGAGGCGGTGCGGCTGGAGAGGCGGGCGGGGAACGGGAAGGGGGCGGA
GAGCCTGATGGCGAAGGCACTTCAGGAGTGCCCCGGGTCCGGGGTGCTCT
GGGCGGAGGAGATTCTGGTGGCTCAGCGTGCGGATCAGAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig121515:47..187-

>mRNA_M-pyrifera_M_contig121515.4425.1 ID=mRNA_M-pyrifera_M_contig121515.4425.1|Name=mRNA_M-pyrifera_M_contig121515.4425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig121515:47..187- (Macrocystis pyrifera P11B4 male)
CTCGAGGCGGTGCGGCTGGAGAGGCGGGCGGGGAACGGGAAGGGGGCGGA
GAGCCTGATGGCGAAGGCACTTCAGGAGTGCCCCGGGTCCGGGGTGCTCT
GGGCGGAGGAGATTCTGGTGGCTCAGCGTGCGGATCAGAAGCTCGAGGCG
GTGCGGCTGGAGAGGCGGGCGGGGAACGGGAAGGGGGCGGAGAGCCTGAT
GGCGAAGGCACTTCAGGAGTGCCCCGGGTCCGGGGTGCTCTGGGCGGAGG
AGATTCTGGTGGCTCAGCGTGCGGATCAGAAG
back to top