mRNA_M-pyrifera_M_contig121406.4402.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig121406.4402.1
Unique NamemRNA_M-pyrifera_M_contig121406.4402.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A7Y1U3H7_9ACTN (DUF87 domain-containing protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1U3H7_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 3.310e-14
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLP 192
            RL +A NR+AEK+D L++LE +L ++M EI  +W+ +A  IET EVPLEKTDISVD+   IW+P
Sbjct:  737 RLRTAENRMAEKLDQLEELESELTDSMWEIQSDWDERAREIETLEVPLEKTDISVDEFSLIWIP 800          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A8J4YNY8_9CHEL (DUF87 domain-containing protein n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J4YNY8_9CHEL)

HSP 1 Score: 66.6 bits (161), Expect = 3.110e-11
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWL 189
            RL +A NR AEK+DDL++L  ++++ + +I  EW  KA AIET +VPLEKTDI+VD+I  +W+
Sbjct:  401 RLATAENRYAEKMDDLNELRDEVEDDINQIVFEWQDKAQAIETYQVPLEKTDIAVDEISLVWI 463          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A848U5A1_9GAMM (ATP-binding protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U5A1_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 4.720e-9
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLPKR 198
            RL++A NR  E ++D D+LE  L E +  I  EW+ KA  I    + LEKTDIS+DD+  +W+P+ 
Sbjct:  734 RLKTAENRYNELLEDRDELEDALSEDLFAIQSEWSDKAGDITPMNIGLEKTDISIDDVSLVWIPRH 799          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A1V5YAB1_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon ADurb.Bin190 TaxID=1852877 RepID=A0A1V5YAB1_9EURY)

HSP 1 Score: 56.2 bits (134), Expect = 1.180e-7
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLP 192
            RL +A  ++A+K ++L+Q+E  L E + EI ++W + A  IE  E+ L+K D+ VDD+  +W+P
Sbjct:  212 RLRTAEEKMADKANELEQIEDKLAEDITEISEKWKSAALQIEEMEISLDKADVDVDDLGVLWIP 275          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A7K3ZV31_9EURY (DUF87 domain-containing protein n=1 Tax=Methanothrix sp. TaxID=90426 RepID=A0A7K3ZV31_9EURY)

HSP 1 Score: 56.2 bits (134), Expect = 1.470e-7
Identity = 25/64 (39.06%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLP 192
            RL +A  ++A+K ++L+Q+E  L E + EI ++W + A  IE  E+ L+K D+ VDD+  +W+P
Sbjct:  735 RLRTAEEKMADKANELEQIEDKLAEDITEISEKWKSAALQIEEMEISLDKADVDVDDLGVLWIP 798          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A8J4ED94_9ACTN (DUF87 domain-containing protein n=2 Tax=Virgisporangium ochraceum TaxID=65505 RepID=A0A8J4ED94_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.150e-7
Identity = 27/64 (42.19%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLP 192
            R+++A N+V +   DL  +E DL   +  I   W+ KAAA+ET EV LE+TD+ V  +   WLP
Sbjct:  729 RVDAAENKVGQLQQDLADVEADLARELTAIQTAWDAKAAAVETVEVGLERTDVQVTQLVLAWLP 792          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A848X872_9BACT (DUF853 family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848X872_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.320e-6
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLPKR 198
            RL+SA+ +  E+   ++ LE +L   + EI DEW  KA+ IE  E+PLE+TD+ +D++   W P R
Sbjct:  725 RLKSAQEKADEQQAVIEDLEDELTNELDEIWDEWKEKASEIEPFEIPLERTDVRLDEMTLFWAPVR 790          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A3M2G2R7_ACTSX (DUF853 family protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G2R7_ACTSX)

HSP 1 Score: 52.4 bits (124), Expect = 3.370e-6
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWLP 192
            RL SA+ R+ EK+DDL++L            +EW   AA +   EV LEK+DISV D+  +W+P
Sbjct:  753 RLRSAKRRLEEKIDDLEELAAXXXXXXXXXQEEWEEAAADVTEHEVGLEKSDISVTDVVVVWVP 816          
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Match: A0A7X6SKK5_9ACTN (DUF853 family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6SKK5_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 4.620e-6
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEKTDISVDDIDFIWL 189
            R+++A  R+ EK+ +LD LE  L E + ++  EW+  AAAIET EV L KT+IS+  +  +W+
Sbjct:  764 RVDAAAARIEEKLANLDALEAQLGEEIADVVAEWDNAAAAIETHEVALSKTNISIAKLTLLWV 826          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig121406.4402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7Y1U3H7_9ACTN3.310e-1456.25DUF87 domain-containing protein n=2 Tax=Acidimicro... [more]
A0A8J4YNY8_9CHEL3.110e-1152.38DUF87 domain-containing protein n=1 Tax=Nymphon st... [more]
A0A848U5A1_9GAMM4.720e-943.94ATP-binding protein n=1 Tax=Granulosicoccus sp. Ta... [more]
A0A1V5YAB1_9EURY1.180e-739.06Uncharacterized protein n=1 Tax=Euryarchaeota arch... [more]
A0A7K3ZV31_9EURY1.470e-739.06DUF87 domain-containing protein n=1 Tax=Methanothr... [more]
A0A8J4ED94_9ACTN5.150e-742.19DUF87 domain-containing protein n=2 Tax=Virgispora... [more]
A0A848X872_9BACT1.320e-640.91DUF853 family protein n=1 Tax=Gemmatimonadetes bac... [more]
A0A3M2G2R7_ACTSX3.370e-642.19DUF853 family protein n=1 Tax=Actinomyces sp. TaxI... [more]
A0A7X6SKK5_9ACTN4.620e-642.86DUF853 family protein n=1 Tax=Actinomycetia bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig121406contigM-pyrifera_M_contig121406:2..205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815733.2009094-CDS-M-pyrifera_M_contig121406:1..2051622815733.2009094-CDS-M-pyrifera_M_contig121406:1..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121406 2..205 +
1692277543.7864308-CDS-M-pyrifera_M_contig121406:1..2051692277543.7864308-CDS-M-pyrifera_M_contig121406:1..205Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig121406 2..205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig121406.4402.1prot_M-pyrifera_M_contig121406.4402.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig121406 2..205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig121406.4402.1

>prot_M-pyrifera_M_contig121406.4402.1 ID=prot_M-pyrifera_M_contig121406.4402.1|Name=mRNA_M-pyrifera_M_contig121406.4402.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
RLESARNRVAEKVDDLDQLECDLQEAMIEIDDEWNTKAAAIETTEVPLEK
TDISVDDIDFIWLPKRA*
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mRNA from alignment at M-pyrifera_M_contig121406:2..205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig121406.4402.1 ID=mRNA_M-pyrifera_M_contig121406.4402.1|Name=mRNA_M-pyrifera_M_contig121406.4402.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig121406:2..205+ (Macrocystis pyrifera P11B4 male)
CGTCTGGAGTCGGCTCGCAACCGTGTGGCCGAGAAGGTCGACGACCTCGA TCAGCTCGAGTGCGACCTCCAAGAGGCGATGATCGAGATCGACGACGAGT GGAACACCAAGGCCGCAGCGATCGAAACGACCGAGGTGCCACTCGAGAAG ACCGACATCTCGGTCGACGACATCGACTTCATCTGGCTGCCGAAACGAGC GTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig121406:2..205+

>mRNA_M-pyrifera_M_contig121406.4402.1 ID=mRNA_M-pyrifera_M_contig121406.4402.1|Name=mRNA_M-pyrifera_M_contig121406.4402.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig121406:2..205+ (Macrocystis pyrifera P11B4 male)
CGTCTGGAGTCGGCTCGCAACCGTGTGGCCGAGAAGGTCGACGACCTCGA
TCAGCTCGAGTGCGACCTCCAAGAGGCGATGATCGAGATCGACGACGAGT
GGAACACCAAGGCCGCAGCGATCGAAACGACCGAGGTGCCACTCGAGAAG
ACCGACATCTCGGTCGACGACATCGACTTCATCTGGCTGCCGAAACGAGC
GTGACGTCTGGAGTCGGCTCGCAACCGTGTGGCCGAGAAGGTCGACGACC
TCGATCAGCTCGAGTGCGACCTCCAAGAGGCGATGATCGAGATCGACGAC
GAGTGGAACACCAAGGCCGCAGCGATCGAAACGACCGAGGTGCCACTCGA
GAAGACCGACATCTCGGTCGACGACATCGACTTCATCTGGCTGCCGAAAC
GAGCGTGA
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